mRNA_H-paniculata_contig519.12532.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig519.12532.1
Unique NamemRNA_H-paniculata_contig519.12532.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig519.12532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig519contigH-paniculata_contig519:23106..27671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size616
Cds size615
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig519.12532.1prot_H-paniculata_contig519.12532.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig519 23106..27671 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930513.6843486-CDS-H-paniculata_contig519:23105..234861622930513.6843486-CDS-H-paniculata_contig519:23105..23486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig519 23106..23486 +
1691481326.3112438-CDS-H-paniculata_contig519:23105..234861691481326.3112438-CDS-H-paniculata_contig519:23105..23486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig519 23106..23486 +
1622930513.7003906-CDS-H-paniculata_contig519:24697..248111622930513.7003906-CDS-H-paniculata_contig519:24697..24811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig519 24698..24811 +
1691481326.3212314-CDS-H-paniculata_contig519:24697..248111691481326.3212314-CDS-H-paniculata_contig519:24697..24811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig519 24698..24811 +
1622930513.7184317-CDS-H-paniculata_contig519:27551..276711622930513.7184317-CDS-H-paniculata_contig519:27551..27671Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig519 27552..27671 +
1691481326.3305445-CDS-H-paniculata_contig519:27551..276711691481326.3305445-CDS-H-paniculata_contig519:27551..27671Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig519 27552..27671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig519.12532.1

>prot_H-paniculata_contig519.12532.1 ID=prot_H-paniculata_contig519.12532.1|Name=mRNA_H-paniculata_contig519.12532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=205bp
FLCSTARLHAIATGPMSPAARCRQHISVILSLLTAITKTIDAYHGVHAGL
LSPQSSSLMTSADGRRVVDHVDRCHHQLNNARHWSFWSLMRRPIDAALGL
QAEVGGGDEWEELGALGGGAWDIVEEEVMVKFRRGLIDANGNMRTLSKDQ
EKELADAAAAGLLMQAKRDGLDLLFGSSRLLDANSAQILEHDEVTYQDPG
DLLGE
back to top

mRNA from alignment at H-paniculata_contig519:23106..27671+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig519.12532.1 ID=mRNA_H-paniculata_contig519.12532.1|Name=mRNA_H-paniculata_contig519.12532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4566bp|location=Sequence derived from alignment at H-paniculata_contig519:23106..27671+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCTCTGTTCCACCGCACGACTGCATGCTATCGCCACCGGCCCAATGTC
ACCCGCAGCCCGGTGCCGCCAACATATCTCGGTGATACTCTCCCTGCTCA
CAGCAATAACAAAAACCATAGATGCCTACCACGGCGTTCACGCAGGTCTG
TTGTCTCCCCAAAGCAGCAGTCTCATGACGTCAGCAGACGGTCGTCGTGT
CGTCGATCATGTAGATCGATGTCATCACCAGTTGAACAATGCTCGACATT
GGAGTTTCTGGTCCTTGATGCGAAGGCCAATCGATGCAGCGTTAGGGCTG
CAGGCAGAAGTTGGGGGGGGGGATGAATGGGAGGAGCTGGGTGCGTTAGG
CGGTGGTGCATGGGATATTGTTGAAGAGGAGGTGAGACGCTGTAGCAGCG
ATGAACAACTTTTGGTATGGTGGAGAGGTAGTTAGTTGTTCGCGTACGTC
AACTTTACCTTGGAGGGCCTCATGCAAACGCAGCATCACTCCGCTACTGA
CGGTGTGCTGCATGATTGGCAAACATGTCATATGTCAATTGGTTTCAAAG
TTCGAGGCGCTCTCAATCAAGGTGACATCTAGTTGGAAGGAGGGATAACA
CTCTTGCACTTGGATTAATGAACATGGATTATTCTGAGTTCATGTTTGCT
CAGGAAATGTCGCTGCTGCACTATACTGTGGTACCAGACACCGTGCAGAT
AGAACGTACAGCAAACGATGAATACATACCTGAAGCACGAGATAGTTATA
TTATAGCAAGGTCTGGTAACCGTACAGTACATCATGTTGCACTCTTGATG
GTTGCCGGACTGTGCAGCGGTTTTTACCGCGCATTTCCCTGGAAACTGAA
TAACACATTCGTGTTGGGGCGGTTTAGCACCTATAGAACAGGAAATACAA
ACGATTACGTATGAATAAATGCAGTATCGTCCATCATGCCCGTTCTACAA
TAGTTCAAATGTCTGTAGTGATGCCCATGATGAACCAAAACAATACAATA
CTACTGGTGACCTGTATATGAATTGTAGTCACTTATGGCGGGCGGTTCGC
TAGAGTTCCACACTTCATGCACGGGGGGGGTGATGTTATCGCGGGAGGAC
GAAGATATGCATGCTCGCGACCTTCGCGTTTTGAATCAAGGGTTTTTTGT
CGATCAATCAGATCGCTCGTCTCACCTTTCCCCTCTTCCTCTACAAGACA
TCCGTTCAGCGCAAGTCTTCCCTCATTCCCACACCTGATTTCGTGCTGCT
GTTATAATTGGTGAGAGCTGTGAGCACACCAACAGGACCAGCAACCAGTG
ATGGACAGTAGACACAGCCATCTCCCCATGTCCAAAGAAAAAACCGTCAA
TATCAACACGCATTTAACAAATCGCGTCTCTGTGCAGTATCTCGAGAATG
AAAAATCATAGGTTGAACGCAGTGAACGAGGTTTTGGGGGCACGATAAAA
CGTGAAGAACGCAACACAAAATGGCGTCCACCGTAAATCGTATTGCTGAT
GAAAATAATTGTACAATGAGTGTTCCCTCCCGCACCGCATCCAAAATGCT
GTCCCCCGCTATGATCTATTGCCGTCTGTTTTTGTCCGCAAGGTGATGGT
AAAGTTTAGAAGAGGTCTGATTGACGCTAATGGCAACATGCGAACGCTCA
GTAAGGATCAGGAGAAAGAACTTGCAGACGCAGCTGCTGCGGGTCTTCTC
ATGCAGGCAAGCAAGGCGAAGAGAAAAATCAGAAATAGGTTAAAACGACC
GAAGAGTACAGTAACGATATTGGCTGAACGCCTGCTATCCTGACGATAAA
ATATATGCTCGGAGTACAAAAATTAAGGTTCGCGTGCAAATATTGAAATA
TTAAGTATTACATTTATTCTCGAAACGGCCTTTTTTTGTGGGGGTGGGGA
TCGGCGGTCGTTGCTCAGCATTTTCACTCCCAACATTTTCGTCTAATCGA
TCAAACCCGCGGTCTTGGAACGATGCGAAAACACCAGATTTCAGTAGTAT
CGTTAAGCTGTGAGAAATTCGTTCCAAATGTCGAACATGTCAAAACATTT
CGGATGGCAGCCTGCTAATTGTTTTTTCTCTTCTCAATGACGATTTGGTC
GTTTCGTATCAATTTATACTCTATCGAAGTGTTTTCTTGATTATGCTGAT
GATTGTGGTATATTATCGGAACAGTTTTGCATACGATGAATATAGCTACT
ACAACTAGAGTGAATAATGTGAGTATGTCACATTTGAACGAATACTATAA
CTATTATTAATGGTGTTTCAGTATGACAACAATATGTTTCCAACAAGATT
TGACAGTGTTTTAGTCGTTTAGCTGTGCAGTAGTATGCCTACAGTATAGA
CCCGCTGACAAGAATCATCCAATAAGAAAGTGAGGCTCGATAATTTTTTG
TTAAACACGAAAAAAATCCAGCTTGAGGAAATGGGGCTTATACTTGGCGC
CATGCTAATAATTCCTATATAAAGGTAAGAATACGGTGCAGTAATGAGAC
AACAACGCGTGAAACGTACCAATAAGGAATATCATAGCAAAATGGGGCGT
ATTCACCCTCCGTTAAATATCGATTATGGACAAATTATATTATAATTTAC
TTGAACCATGTAGCAGGTAATATTTTCTTGCTCTTTTATCACTGCATATG
GAAACATTTATAATACATACGAAGTTCAAATCATTACTTGGTTGAGTAAT
AAAATGTATAATAACTTGTAAAAATCGATTCAAATGTGGCATTAAAAAAA
TATTGCTACCATGGGACATAATTAAGTGGTGCTCTATCTCGCTATATGCC
CCGCTGTGGCACATTAAAAAAATGCCCCAAGTTTGGGCCCAAACCGGGTA
GTGTTTGGTCCATAACGCTTTACAGAAACATTTGTATGCGCAAAACCAAG
TATCTCCGAAGAGCCTGAGAACTGGTGCTTCCAACAGATCAAGAATAATT
CAGATCTGACGTGTTTTGAAAAAATTACAATGGCAAAGGCTGCCACTTGG
CCCCCAACAACGGAAATCTCACGCTGGCGAAAGAGACTTTTGCGCAAGGG
TGCGCGCAGCTGTGATATTTTCTGGGAGGACTTCCTTGGCATGAGGCGCG
AAGAACTACCAGGGGAGGTTTGGAGATTTGTCCTGTTGCGCTCGGTCTGT
ATGCTGGCGCATGCCGCATTCAGCCAGCTGTTTTTTTTAGCTCAAAACCA
GTTTTTTTCAACATAATTCACAAAAAGAGAAAGTTGTGACATGAACCCAC
GCAAGCGGCGCAGCAGCAGCCCTCTTGCCGACGATAGAAGGTACCAACGC
ACAACGGCTTCACAGCTAAGCTCTGAGGAGTCTTCGGCTGGCGGTGAAGA
GTCATGGTCGAGTGATGTGGAGGATAAATCATAGAGTGAAAGCTAGTCAT
GGTCGAGTGACAATGACTAACATGCAGCAAGGGGCAAGCGAGCAGATAGG
AAAAAGTAGGAGTTGCTGCAGCAAAAGCCCGCACCGCCCCAGCCCACGAG
CTTGACAAGCAGCGAACGGGTGATAGATCTGAACGCGACGAGTTTAGAAG
CGATGATATGTGTATGTAGAAATGGATGGTGGTGCACCGTTGTACGGTTG
CATGTGTTCATTTCCTTGGCCATGTGCTCTCTAGTACATGATGAATGCTT
CCTCAGCACTGTTAACAAGCGTGATCAGGTGTGCGAAGCGCTTGCGCTCC
AATCACTTGACAATATTGTTTCTGTCCCTCACCCAAAGTGCTTTTTGCAT
TGGCACGACTTGAAACCACCTCCAGCGCACCATTTTTGGTGATTGGCGGT
TATGTTAAGAACCGCTAGAAACCACCGTCGCCTAATCACACCGTTGCCCT
AACTATGTTTCCTATTTGAGGCCGGTCTTGTGCTGGAAATGCGAATCGAA
ACATCTCTTTCGCTGTGTTTGGCCATATTCCACTGTATTCGTTTTTTTAA
AGTAATTCCGTTGATACAACGATTTTTATTTTTATTTTTTTGCATCACAT
TTCTATTGTTAATGCCAACTTTTTTACAAGGCGACTTCAAGTTTTTTTTT
CTGGAGTCGAGATATTTGCAAAAACAAATTTAGAGGGATAATAGCCGATT
TTACGAAAAATATCATTCCCCATAGAAAAATCCGTGTTTTTGGCTATACC
TTTTCGAGTTTTGATTTTTTTTTTCGAGATTCTTTTTGTTCAAATCTTTG
GGTTTTGCACTTACGGTGCTGATGCAAAAATCAGTATTACAAAATTCGTT
TTGCTTCTCGAGATTCGGCGAACGTCTCTTAACTTTGTCCCATAGCAGTA
TCTAATAAACCAATAATGGGATAAGAGAAAAACAAAACTAAAGATAAAGG
CGAAAAATCATTTTTGAATCGAGGTTCACCAGTTCATTGGTCCGAAATGC
TGAAAAATCAAGTTGCGGAAATGCAAATGATTAAAAAAAAAAACAGGCTA
AAAGAGATGGGCTGGACCTTCTGTTCGGCTCGTCCCGCCTTCTGGACGCT
AATAGCGCCCAAATTTTAGAGCACGACGAAGTCACTTACCAAGACCCAGG
AGACCTTCTTGGCGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig519:23106..27671+

>mRNA_H-paniculata_contig519.12532.1 ID=mRNA_H-paniculata_contig519.12532.1|Name=mRNA_H-paniculata_contig519.12532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at H-paniculata_contig519:23106..27671+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCTCTGTTCCACCGCACGACTGCATGCTATCGCCACCGGCCCAATGTC
ACCCGCAGCCCGGTGCCGCCAACATATCTCGGTGATACTCTCCCTGCTCA
CAGCAATAACAAAAACCATAGATGCCTACCACGGCGTTCACGCAGGTCTG
TTGTCTCCCCAAAGCAGCAGTCTCATGACGTCAGCAGACGGTCGTCGTGT
CGTCGATCATGTAGATCGATGTCATCACCAGTTGAACAATGCTCGACATT
GGAGTTTCTGGTCCTTGATGCGAAGGCCAATCGATGCAGCGTTAGGGCTG
CAGGCAGAAGTTGGGGGGGGGGATGAATGGGAGGAGCTGGGTGCGTTAGG
CGGTGGTGCATGGGATATTGTTGAAGAGGAGTTTCTCTGTTCCACCGCAC
GACTGCATGCTATCGCCACCGGCCCAATGTCACCCGCAGCCCGGTGCCGC
CAACATATCTCGGTGATACTCTCCCTGCTCACAGCAATAACAAAAACCAT
AGATGCCTACCACGGCGTTCACGCAGGTCTGTTGTCTCCCCAAAGCAGCA
GTCTCATGACGTCAGCAGACGGTCGTCGTGTCGTCGATCATGTAGATCGA
TGTCATCACCAGTTGAACAATGCTCGACATTGGAGTTTCTGGTCCTTGAT
GCGAAGGCCAATCGATGCAGCGTTAGGGCTGCAGGCAGAAGTTGGGGGGG
GGGATGAATGGGAGGAGCTGGGTGCGTTAGGCGGTGGTGCATGGGATATT
GTTGAAGAGGAGGTGATGGTAAAGTTTAGAAGAGGTCTGATTGACGCTAA
TGGCAACATGCGAACGCTCAGTAAGGATCAGGAGAAAGAACTTGCAGACG
CAGCTGCTGCGGGTCTTCTCATGCAGGTGATGGTAAAGTTTAGAAGAGGT
CTGATTGACGCTAATGGCAACATGCGAACGCTCAGTAAGGATCAGGAGAA
AGAACTTGCAGACGCAGCTGCTGCGGGTCTTCTCATGCAGGCTAAAAGAG
ATGGGCTGGACCTTCTGTTCGGCTCGTCCCGCCTTCTGGACGCTAATAGC
GCCCAAATTTTAGAGCACGACGAAGTCACTTACCAAGACCCAGGAGACCT
TCTTGGCGAGGCTAAAAGAGATGGGCTGGACCTTCTGTTCGGCTCGTCCC
GCCTTCTGGACGCTAATAGCGCCCAAATTTTAGAGCACGACGAAGTCACT
TACCAAGACCCAGGAGACCTTCTTGGCGAG
back to top