mRNA_H-paniculata_contig51882.12529.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51882.12529.1
Unique NamemRNA_H-paniculata_contig51882.12529.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig51882.12529.1 vs. uniprot
Match: D8LTE6_ECTSI (GSCFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTE6_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 7.160e-50
Identity = 80/110 (72.73%), Postives = 92/110 (83.64%), Query Frame = 1 
Query:    1 KDVANCHKLPAYNFDRRILSVEEITSSLHLSIANVFRVNPKARVVLTVSPVRHWRDGSVENARSKAHLLAGAHGAIERLREAGLGRA-GVGGPGHCGYFPSYEIVNDDLR 327
            KDVANCHKLP Y FDRRI+SV+EI  +LH +++N+ R NP ARV+LTVSPVRHWRDG+VEN+RSKAHLLAGAH AI+ LR AG+G   G GGPG   YFPSYEIVNDDLR
Sbjct:  149 KDVANCHKLPGYQFDRRIVSVDEIAQALHRALSNMLRANPNARVLLTVSPVRHWRDGAVENSRSKAHLLAGAHAAIDSLRAAGVGEGEGDGGPGRVAYFPSYEIVNDDLR 258
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BLAST of mRNA_H-paniculata_contig51882.12529.1 vs. uniprot
Match: UPI000AE82935 (GSCFA domain-containing protein n=1 Tax=Marinobacter sp. YWL01 TaxID=1766722 RepID=UPI000AE82935)

HSP 1 Score: 104 bits (259), Expect = 1.770e-26
Identity = 53/109 (48.62%), Postives = 69/109 (63.30%), Query Frame = 1 
Query:    1 KDVANCHKLPAYNFDRRILSVEEITSSLHLSIANVFRVNPKARVVLTVSPVRHWRDGSVENARSKAHLLAGAHGAIERLREAGLGRAGVGGPGHCGYFPSYEIVNDDLR 327
            K VANCHK+P   F +++LSV EI SSL   IA + +VNPKA+V+ T+SPVRH +DG +EN RSKAHL+   H  +    E+              YFPSYEI+ D+LR
Sbjct:   18 KTVANCHKVPQKEFTKKLLSVAEIESSLQNVIALIQKVNPKAQVIFTISPVRHLKDGFLENQRSKAHLITAIHSVLLSRAESR----------ELSYFPSYEIMMDELR 116
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BLAST of mRNA_H-paniculata_contig51882.12529.1 vs. uniprot
Match: UPI001CD49808 (GSCFA domain-containing protein n=1 Tax=Muricauda ruestringensis TaxID=111501 RepID=UPI001CD49808)

HSP 1 Score: 108 bits (271), Expect = 1.770e-26
Identity = 55/110 (50.00%), Postives = 72/110 (65.45%), Query Frame = 1 
Query:    1 KDVANCHKLPAYNFDRRILSVEEITSSLHLSIANVFRVNPKARVVLTVSPVRHWRDGSVENARSKAHLLAGAHGAI-ERLREAGLGRAGVGGPGHCGYFPSYEIVNDDLR 327
            K VANCHK+P   F +++LS+E I S L   + N+ +VNPKA+++ TVSPVRH +DG VEN RSKAHL+A  H  +  R +  GLG           YFPSYEI+ D+LR
Sbjct:  138 KIVANCHKVPQKQFAKKLLSIEAIESCLDSIVDNITKVNPKAQIIFTVSPVRHLKDGFVENQRSKAHLMAAVHSLLLSRTQSRGLG-----------YFPSYEIMMDELR 236
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BLAST of mRNA_H-paniculata_contig51882.12529.1 vs. uniprot
Match: A0A519NI65_FLASP (GSCFA domain-containing protein n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A519NI65_FLASP)

HSP 1 Score: 107 bits (266), Expect = 9.110e-26
Identity = 52/107 (48.60%), Postives = 70/107 (65.42%), Query Frame = 1 
Query:    7 VANCHKLPAYNFDRRILSVEEITSSLHLSIANVFRVNPKARVVLTVSPVRHWRDGSVENARSKAHLLAGAHGAIERLREAGLGRAGVGGPGHCGYFPSYEIVNDDLR 327
            VANCHK+P   F + ILSV+ I++S+   + +V  VNPKA+++ T+SPVRH +DG VEN RSKA+L++G H AI                 +C YFPSYEIV D+LR
Sbjct:  140 VANCHKVPQREFSKEILSVDAISASVKNMVKSVSEVNPKAQIIFTISPVRHLKDGFVENQRSKANLISGLHSAIGNFE-------------NCRYFPSYEIVMDELR 233
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BLAST of mRNA_H-paniculata_contig51882.12529.1 vs. uniprot
Match: L1JYC4_GUITC (GSCFA domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JYC4_GUITC)

HSP 1 Score: 106 bits (264), Expect = 2.950e-25
Identity = 52/107 (48.60%), Postives = 69/107 (64.49%), Query Frame = 1 
Query:    7 VANCHKLPAYNFDRRILSVEEITSSLHLSIANVFRVNPKARVVLTVSPVRHWRDGSVENARSKAHLLAGAHGAIERLREAGLGRAGVGGPGHCGYFPSYEIVNDDLR 327
            V+NCHKLP   F R+I+S  E + +L  S+     +NPK R+++TVSPVRHW+DG+VEN+RSKA+L+  AH  + +L            P    YFPSYEIV DDLR
Sbjct:  140 VSNCHKLPQLLFSRKIVSASEASEALKDSLTTWMSLNPKLRIIITVSPVRHWKDGAVENSRSKANLIVTAHELMAQL------------PNKVFYFPSYEIVMDDLR 234
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BLAST of mRNA_H-paniculata_contig51882.12529.1 vs. uniprot
Match: A0A7S2ERU4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ERU4_TRICV)

HSP 1 Score: 105 bits (262), Expect = 6.100e-25
Identity = 53/107 (49.53%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:    7 VANCHKLPAYNFDRRILSVEEITSSLHLSIANVFRVNPKARVVLTVSPVRHWRDGSVENARSKAHLLAGAHGAIERLREAGLGRAGVGGPGHCGYFPSYEIVNDDLR 327
            VANCHKL    F+RR+ S +E    L   ++++  +NP  RV  TVSPVRHW+DG VEN RSKAHL+A  H A++          G GG     YFPSYEIV D+LR
Sbjct:  157 VANCHKLHPRVFERRLQSADEARDDLLSCVSSLRSLNPNVRVSFTVSPVRHWKDGPVENGRSKAHLIAACHAAVDA--------PGSGGRAAADYFPSYEIVMDELR 255
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BLAST of mRNA_H-paniculata_contig51882.12529.1 vs. uniprot
Match: UPI0003FEEA00 (GSCFA domain-containing protein n=1 Tax=Flavobacterium filum TaxID=370974 RepID=UPI0003FEEA00)

HSP 1 Score: 104 bits (260), Expect = 6.910e-25
Identity = 54/109 (49.54%), Postives = 66/109 (60.55%), Query Frame = 1 
Query:    1 KDVANCHKLPAYNFDRRILSVEEITSSLHLSIANVFRVNPKARVVLTVSPVRHWRDGSVENARSKAHLLAGAHGAIERLREAGLGRAGVGGPGHCGYFPSYEIVNDDLR 327
            K VANCHK+P  NF + +LSVEEIT SLH     +   NP+ + + TVSPVRH +DG VEN  SKAHL+A  H +I  L  +              YFPSYEI+ DDLR
Sbjct:  138 KRVANCHKIPQSNFTKELLSVEEITDSLHNIQTKLTEFNPEIKFIFTVSPVRHIKDGFVENQLSKAHLIAALHSSITHLSTSS-------------YFPSYEIMMDDLR 233
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BLAST of mRNA_H-paniculata_contig51882.12529.1 vs. uniprot
Match: A0A2G5L7L8_9FLAO (GSCFA domain-containing protein n=1 Tax=Maribacter sp. 4G9 TaxID=1889777 RepID=A0A2G5L7L8_9FLAO)

HSP 1 Score: 103 bits (258), Expect = 1.560e-24
Identity = 54/107 (50.47%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:    7 VANCHKLPAYNFDRRILSVEEITSSLHLSIANVFRVNPKARVVLTVSPVRHWRDGSVENARSKAHLLAGAHGAIERLREAGLGRAGVGGPGHCGYFPSYEIVNDDLR 327
            VANCHK+P   F +++LS  E+ SSL  +I ++  +NPKA+++ T+SPVRH +DG VEN RSKAHL+A  H   E L     G    GG G   YFPSYEI+ D+LR
Sbjct:  140 VANCHKVPQKEFRKKLLSQTEVKSSLIKTIESIKNINPKAQIIFTISPVRHLKDGFVENQRSKAHLIAAVH---EVLDSPSFG----GGKGEA-YFPSYEIMMDELR 238
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BLAST of mRNA_H-paniculata_contig51882.12529.1 vs. uniprot
Match: UPI00110DC935 (GSCFA domain-containing protein n=1 Tax=Muricauda algicola TaxID=2583815 RepID=UPI00110DC935)

HSP 1 Score: 103 bits (257), Expect = 2.260e-24
Identity = 57/109 (52.29%), Postives = 71/109 (65.14%), Query Frame = 1 
Query:    1 KDVANCHKLPAYNFDRRILSVEEITSSLHLSIANVFRVNPKARVVLTVSPVRHWRDGSVENARSKAHLLAGAHGAIERLREAGLGRAGVGGPGHCGYFPSYEIVNDDLR 327
            K VANCHK P   F + +L+++EI SSL  ++  V  VN KA VV TVSPVRH +DG VEN RSKAHL+A  HG     R+  L ++     GH  YFPSYEI+ D+LR
Sbjct:  138 KIVANCHKAPQKEFGKELLTIKEIESSLERTLECVSEVNKKATVVFTVSPVRHLKDGFVENQRSKAHLIAALHGLFSS-RDVTLSQSKGKLRGH--YFPSYEIMMDELR 243
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BLAST of mRNA_H-paniculata_contig51882.12529.1 vs. uniprot
Match: A0A6G7J567_9FLAO (GSCFA domain-containing protein n=1 Tax=Muricauda oceani TaxID=2698672 RepID=A0A6G7J567_9FLAO)

HSP 1 Score: 103 bits (256), Expect = 2.620e-24
Identity = 55/110 (50.00%), Postives = 70/110 (63.64%), Query Frame = 1 
Query:    1 KDVANCHKLPAYNFDRRILSVEEITSSLHLSIANVFRVNPKARVVLTVSPVRHWRDGSVENARSKAHLLAGAHGAIERLREAGLGRAGVGGPGHCG-YFPSYEIVNDDLR 327
            + VANCHK+P   F +++LSV EI SSL   IA V R+NPKA+++ T+SPVRH +DG VEN RSK+HL A  H  I                GH G YFPSYE++ D+LR
Sbjct:  138 RTVANCHKVPQKRFTKKLLSVTEIESSLQNVIALVQRLNPKAQMIFTISPVRHIKDGFVENQRSKSHLFAALHQTIN---------------GHGGSYFPSYELMMDELR 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51882.12529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTE6_ECTSI7.160e-5072.73GSCFA domain-containing protein n=2 Tax=Ectocarpus... [more]
UPI000AE829351.770e-2648.62GSCFA domain-containing protein n=1 Tax=Marinobact... [more]
UPI001CD498081.770e-2650.00GSCFA domain-containing protein n=1 Tax=Muricauda ... [more]
A0A519NI65_FLASP9.110e-2648.60GSCFA domain-containing protein n=1 Tax=Flavobacte... [more]
L1JYC4_GUITC2.950e-2548.60GSCFA domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S2ERU4_TRICV6.100e-2549.53Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
UPI0003FEEA006.910e-2549.54GSCFA domain-containing protein n=1 Tax=Flavobacte... [more]
A0A2G5L7L8_9FLAO1.560e-2450.47GSCFA domain-containing protein n=1 Tax=Maribacter... [more]
UPI00110DC9352.260e-2452.29GSCFA domain-containing protein n=1 Tax=Muricauda ... [more]
A0A6G7J567_9FLAO2.620e-2450.00GSCFA domain-containing protein n=1 Tax=Muricauda ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51882contigH-paniculata_contig51882:317..643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue5.2e-40
Seed eggNOG ortholog2880.D8LTE6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GSCFA family
EggNOG OGs2EGXU@1,2SMRS@2759
Ec32 ortholog descriptionSGNH hydrolase-type esterase domain
Ec32 orthologEc-02_006060.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930513.3283966-CDS-H-paniculata_contig51882:316..6431622930513.3283966-CDS-H-paniculata_contig51882:316..643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51882 317..643 +
1691481326.1292472-CDS-H-paniculata_contig51882:316..6431691481326.1292472-CDS-H-paniculata_contig51882:316..643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51882 317..643 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51882.12529.1prot_H-paniculata_contig51882.12529.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51882 317..643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51882.12529.1

>prot_H-paniculata_contig51882.12529.1 ID=prot_H-paniculata_contig51882.12529.1|Name=mRNA_H-paniculata_contig51882.12529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
KDVANCHKLPAYNFDRRILSVEEITSSLHLSIANVFRVNPKARVVLTVSP
VRHWRDGSVENARSKAHLLAGAHGAIERLREAGLGRAGVGGPGHCGYFPS
YEIVNDDLR
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mRNA from alignment at H-paniculata_contig51882:317..643+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51882.12529.1 ID=mRNA_H-paniculata_contig51882.12529.1|Name=mRNA_H-paniculata_contig51882.12529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at H-paniculata_contig51882:317..643+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGACGTCGCAAATTGCCACAAGCTCCCGGCCTATAACTTCGACCGGCG
CATCTTATCGGTGGAAGAGATCACCTCATCCCTGCACCTGTCCATCGCCA
ACGTGTTTCGAGTGAACCCGAAAGCCCGGGTCGTGCTGACCGTTAGCCCG
GTCCGGCACTGGCGTGACGGGTCAGTGGAGAATGCTAGGAGCAAGGCGCA
CTTGCTGGCGGGCGCGCATGGCGCGATAGAACGTTTGCGTGAGGCAGGGT
TGGGTCGGGCGGGCGTCGGGGGACCGGGCCACTGCGGTTATTTCCCTTCG
TATGAGATCGTCAATGACGACTTGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig51882:317..643+

>mRNA_H-paniculata_contig51882.12529.1 ID=mRNA_H-paniculata_contig51882.12529.1|Name=mRNA_H-paniculata_contig51882.12529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig51882:317..643+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGACGTCGCAAATTGCCACAAGCTCCCGGCCTATAACTTCGACCGGCG
CATCTTATCGGTGGAAGAGATCACCTCATCCCTGCACCTGTCCATCGCCA
ACGTGTTTCGAGTGAACCCGAAAGCCCGGGTCGTGCTGACCGTTAGCCCG
GTCCGGCACTGGCGTGACGGGTCAGTGGAGAATGCTAGGAGCAAGGCGCA
CTTGCTGGCGGGCGCGCATGGCGCGATAGAACGTTTGCGTGAGGCAGGGT
TGGGTCGGGCGGGCGTCGGGGGACCGGGCCACTGCGGTTATTTCCCTTCG
TATGAGATCGTCAATGACGACTTGAGGAAGGACGTCGCAAATTGCCACAA
GCTCCCGGCCTATAACTTCGACCGGCGCATCTTATCGGTGGAAGAGATCA
CCTCATCCCTGCACCTGTCCATCGCCAACGTGTTTCGAGTGAACCCGAAA
GCCCGGGTCGTGCTGACCGTTAGCCCGGTCCGGCACTGGCGTGACGGGTC
AGTGGAGAATGCTAGGAGCAAGGCGCACTTGCTGGCGGGCGCGCATGGCG
CGATAGAACGTTTGCGTGAGGCAGGGTTGGGTCGGGCGGGCGTCGGGGGA
CCGGGCCACTGCGGTTATTTCCCTTCGTATGAGATCGTCAATGACGACTT
GAGG
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