mRNA_H-paniculata_contig5188.12527.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5188.12527.1
Unique NamemRNA_H-paniculata_contig5188.12527.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5188.12527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5188contigH-paniculata_contig5188:828..2852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size210
Cds size186
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5188.12527.1prot_H-paniculata_contig5188.12527.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5188 852..2852 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930513.0962617-UTR-H-paniculata_contig5188:827..8511622930513.0962617-UTR-H-paniculata_contig5188:827..851Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5188 828..851 +
1691481326.038962-UTR-H-paniculata_contig5188:827..8511691481326.038962-UTR-H-paniculata_contig5188:827..851Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5188 828..851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930513.1080427-CDS-H-paniculata_contig5188:851..8751622930513.1080427-CDS-H-paniculata_contig5188:851..875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5188 852..875 +
1691481326.0501704-CDS-H-paniculata_contig5188:851..8751691481326.0501704-CDS-H-paniculata_contig5188:851..875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5188 852..875 +
1622930513.1196089-CDS-H-paniculata_contig5188:2690..28521622930513.1196089-CDS-H-paniculata_contig5188:2690..2852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5188 2691..2852 +
1691481326.061928-CDS-H-paniculata_contig5188:2690..28521691481326.061928-CDS-H-paniculata_contig5188:2690..2852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5188 2691..2852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5188.12527.1

>prot_H-paniculata_contig5188.12527.1 ID=prot_H-paniculata_contig5188.12527.1|Name=mRNA_H-paniculata_contig5188.12527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
MPADSPQEPWDEAEFSQRRSIGVDVSRPYPAVVRAANFAGWFLIFLGMMQ
IIIGAVIFNGE*
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mRNA from alignment at H-paniculata_contig5188:828..2852+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5188.12527.1 ID=mRNA_H-paniculata_contig5188.12527.1|Name=mRNA_H-paniculata_contig5188.12527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2025bp|location=Sequence derived from alignment at H-paniculata_contig5188:828..2852+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAAGCGCCATACCACTGACAGGATGCCCGCGGACTCCCCTCAAGAGGT
AAGCTATGTTCCTTCTGTTAGGTTTTTTCCGTACTTGTGCCATTGTGCAG
GCCTTTTGTCGGCCGCTCCAGGCGAAATCAGGCCACATTTTCTGCCAAGT
ACATCGGTTGTACGGAAAGTCACTTGACATGATTGATGACTATCAGGGGC
AAGAAGCATACCGACAGCCGGTACCGGTGTGGAGAGGATGGAGTGGCATT
GGAAAGTTTGTGGATGTATGCGGCAATGCCTCCCTATATGGTCTTGTGTT
TCAATGGGTGCCGCTGGGATCAATCCACCCCTCAAAAGTACGAGATTTGT
TTGCGATCCAGCCCAAGAATCAAGTACCGCCCGTAGAGCCCTGTAGAGCG
TAAAGGCGCCGCCCCTGCAGGCTTAACCATGCGCGTGATAGATTCTCATC
CGCAAAGTTCATCAGGTTCGATTTATCATCCCAGCAAAAGTATACAGTGC
AAACAGTTGGCAACTACACTCCATGCTATTAATAACAGAGAGTACCAATG
GCATGCAGACATGATGAAATAGATAAACCTGTATCTTGCACGTATGTGAC
GTTTTTCTGCAGTACGTAAATTTCACGTCCCCGACAACGACGAATACAAG
ACTAAAATAAATACGAGAAATCTGGAACAAATACTGTGTCGGCTTGGTTG
AGGAAGATATCGATGTGACGCGAATAATGCACAGTGGACTCGATATACCA
TGGATCATCGAAAGCTCGGGCATATAGCGTATTCAATCTGTACAGTACCA
TCCGGAAAATAAACAGGACCACGTGTTCGCCGGGTATACGACCACCTGGT
GACGACTTGCAGAATCACCATCCATGTACTTGTGAACGAATAAATACGTG
TTTACCCAAGAGATTTAGGGATAATTGGAGATAATTGCGAATGCTCCATT
CGTATTTGTCCGGGGGGTGATAAATTTACTTGGCAGGAGTGTTGATTGTT
GAACCCAGAAGACGGTACAGTCAGTATTGCGGCGGCATATCGTTAATATT
AATAGGACCAAATTGTTACTCTAGTGGGGGGCTGATGTCTGAACCCGTTC
CACCGACCTAACTTGCGGAACCAACATGTGTGGAACCGTCTCAATCATGC
GGTTGGCGCCCACGTTTTGCTTTTCGGTTTAAGCCCGTGATTATGGAGAT
ACGTCGAGCTGAATCCGGCTATACCGCGCGAAGGTCGTGAGAAAATGAAC
ACAGGAAAACCTTTCCATTTTCAGTGTATTCAGGCACAACAATGTTGGCA
TCTGTTTTTCATCGGGGAGAGAAAGTCTGGACCCGTTCTACCAACCCAGT
ATGTGGGGTTGATATGTGTCCAACCGTCAATCATGCAGTGTGCACCCACG
TTTCGGTTTTTGATTTAACCCCGTGATCGTGGAGATACACTGAGTTGAAT
GGGGGGACATCGTACGAAAGAGCAACCATTTGGCTCTATTAACAGTGTGC
CTCCGTAATAGTAGCTGGTGTGTTGTTTGGCCCGAGGATTCAAACTTCCC
GCACAGGACACAGGACAACACGACGCTGCAATTTTTCTTTGGGAAACACT
CCATGGCTTTGCCCACACACAGCGTTAGCTGAAATGTGACAAGCTTGGAG
TCTTCGAAAGGGCTGGCCGCATATGCGGCATTGACCGAACCGCTCGCAGT
CACTGGCGGTCCCACACACCCAGTCCTTTGTTCATGAATCACCCAGGCCA
CCTTCTTGATCCACCGCAAGAAAATGCTGCAACCGCGTCACGACGGCCGG
CCTGCCATACCCACCGCATGCTAAACAACGCGCGTGTCGATGTTTTCGTT
GCATTTTCCGTAGCCGTGGGATGAGGCGGAGTTTTCGCAGCGACGGAGTA
TTGGGGTTGACGTCTCCAGGCCATACCCGGCAGTTGTGCGGGCCGCCAAT
TTCGCGGGATGGTTTCTAATCTTTTTGGGCATGATGCAAATCATAATCGG
GGCTGTGATTTTCAACGGTGAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig5188:828..2852+

>mRNA_H-paniculata_contig5188.12527.1 ID=mRNA_H-paniculata_contig5188.12527.1|Name=mRNA_H-paniculata_contig5188.12527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig5188:828..2852+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGCGGACTCCCCTCAAGAGATGCCCGCGGACTCCCCTCAAGAGCC
GTGGGATGAGGCGGAGTTTTCGCAGCGACGGAGTATTGGGGTTGACGTCT
CCAGGCCATACCCGGCAGTTGTGCGGGCCGCCAATTTCGCGGGATGGTTT
CTAATCTTTTTGGGCATGATGCAAATCATAATCGGGGCTGTGATTTTCAA
CGGTGAGTAACCGTGGGATGAGGCGGAGTTTTCGCAGCGACGGAGTATTG
GGGTTGACGTCTCCAGGCCATACCCGGCAGTTGTGCGGGCCGCCAATTTC
GCGGGATGGTTTCTAATCTTTTTGGGCATGATGCAAATCATAATCGGGGC
TGTGATTTTCAACGGTGAGTAA
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