mRNA_H-paniculata_contig5187.12526.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5187.12526.1
Unique NamemRNA_H-paniculata_contig5187.12526.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5187.12526.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 7.770e-53
Identity = 97/211 (45.97%), Postives = 130/211 (61.61%), Query Frame = 1
Query:   25 IIHIDEAWFNQIRDRDRVRMFPGEERVGSSNVQHKSHVPKVMFICAVSRPDPSRDFDGNIRIWRFCVIKQAQRNSAQ-------------------RERG----QQYEFDVTIDAEWYQEWCKD-FLSASKE*MPWLEGEEMVAQKDGANPHMRKDTPQKLNELGRDGGWNINF------SPDLSINDVGFFASLKSRVWREPYGTIDDLV 567
            ++H+DE+WF  +R++++VR+F GE+  G   V H+SH+PK+M I A +RPDP+ DFDG I IWR CVI+ AQR+S +                   R R     ++YEFD TIDAEWY++W  D  L A KE MPWL  + +V Q+DGA+PH  K  P+ LN  G   GW +        SPDL+IND+G FASLK RVW     +ID+LV
Sbjct:  154 VVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_H-paniculata_contig5187.12526.1 vs. uniprot
Match: A0A6A4Z066_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z066_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.480e-30
Identity = 83/248 (33.47%), Postives = 125/248 (50.40%), Query Frame = 1
Query:   19 FQIIHIDEAWFNQIRDRDRVRMFPGEERVGSSNVQHKSHVPKVMFICAVSRPDPSRDFDGNIRIWRFCVIKQAQRNSAQRERGQQYEFDVTIDAEWYQEWCKD-FLSASKE*MPWLEGEEMVAQKDGANPHMRKDTPQKLNELGRDGGWNINF------SPDLSINDVGFFASLKSRVWREPYGTIDDLVEGVKSMYDAYEAETLERVWKRLFKRYNQVLKALGGSDFEVQHAETKERQRAGSLPKSV 741
            + ++H+DE WFN  +D  +V +  GEE V     + K  +PKVMF+CAV RP  +  FDG I IW F     A RNS  R  G      V +D   Y+++  +  + A KE  P +  + +V Q D A PH   D    L ++  D GW          SPDL++ D+GFFAS++S  ++    ++DD++      +D    E L  V+  L      VL+  GG+ F++ H      +RAG+L  +V
Sbjct:    2 WDVVHLDEKWFNADKDCRKVYLVDGEE-VLRRTCKSKRFIPKVMFLCAVGRPRQADGFDGKIGIWPFVSKTPAVRNSRNRPAGTMVTTLVNVDGATYRDYVLNKVVPAIKEKFPSV-SKRVVLQHDNATPHRSIDDAA-LAQVSTD-GWTFVVRRQPPNSPDLNVLDLGFFASIQSLQYKVVSRSVDDVIASTLMAFDMLNDEKLANVFLTLQAVMRLVLEHRGGNHFKLPHLHKDAMRRAGTLMLNV 245          
BLAST of mRNA_H-paniculata_contig5187.12526.1 vs. uniprot
Match: W2NW41_PHYPR (HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NW41_PHYPR)

HSP 1 Score: 120 bits (301), Expect = 5.000e-28
Identity = 84/259 (32.43%), Postives = 132/259 (50.97%), Query Frame = 1
Query:    1 ITFRSGFQIIHIDEAWFNQIRDRDRVRMFPGEERVGSSNVQHKSHVPKVMFICAVSRP--DPSRD--FDGNIRIWRFCVIKQAQRNSAQRERGQQYEFDV-TIDAEWYQEW-CKDFLSASKE*MPWLEGEEMV-AQKDGANPHMRKDTPQKLNELGRDGGWNINF------SPDLSINDVGFFASLKSRVWREPYGTIDDLVEGVKSMYDAYEAETLERVWKRLFKRYNQVLKALGGSDFEVQHAETKERQRAGSLPKS 738
            + F   F ++HIDE WFN+  DR    +   EE       Q K  + K MFI AV+RP  D  R   FDG I IW F    +A+R S  R +G     +V ++D E Y+     D + A K   P    +  +  Q+D A PH+  D P  +   GR GGW+I        SPDL++ D+G+F S++S  ++     ++ L++ V S + A +A+TL +++  L      +++A GG++++  H      ++AG LP S
Sbjct:  157 MVFADMFDVVHIDEKWFNEDTDRKCYYLDADEEEPVRQR-QSKRFISKTMFIAAVARPRYDAHRKQAFDGKIGIWAFAEEYEAKRTSKNRPKGTIVLRNVESVDREAYKATHIGDIIPAIKAKWPRSGKKRTIYIQQDNAKPHVSVDDPDIM-AAGRSGGWDIRMRCQPPNSPDLNVLDLGYFRSIQSLQYQTECRGVEALLDAVNSAFSAMKADTLNKIFMTLQTCMECIIRANGGNNYKTPHRGKDALKKAGQLPVS 413          
BLAST of mRNA_H-paniculata_contig5187.12526.1 vs. uniprot
Match: W2QAD0_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2QAD0_PHYPN)

HSP 1 Score: 117 bits (294), Expect = 1.310e-27
Identity = 83/259 (32.05%), Postives = 130/259 (50.19%), Query Frame = 1
Query:    1 ITFRSGFQIIHIDEAWFNQIRDRDRVRMFPGEERVGSSNVQHKSHVPKVMFICAVSRP--DPSRD--FDGNIRIWRFCVIKQAQRNSAQRERGQQYEFDV-TIDAEWYQEWC-KDFLSASKE*MPWLEGEEMV-AQKDGANPHMRKDTPQKLNELGRDGGWNINF------SPDLSINDVGFFASLKSRVWREPYGTIDDLVEGVKSMYDAYEAETLERVWKRLFKRYNQVLKALGGSDFEVQHAETKERQRAGSLPKS 738
            + F   F ++HIDE WFN+  DR    +   EE       Q K  + K MFI AV+RP  D  R   FDG I IW F    +A+R S  R +G     +V ++D E Y+     D + A K   P    +  +  Q+D A PH+  D P  +   GR GGW+I        SPDL++ D+G+F S++S  ++     ++ L++ V S + A +A+TL +++  L      + +A GG++++  H      ++ G LP S
Sbjct:   61 VVFADMFDVVHIDEKWFNEDTDRKCYYLDADEEEPVRQR-QSKRFISKTMFIAAVARPRYDAHRKQAFDGKIGIWAFAEEYEAKRTSKNRPKGTIVLRNVESVDREAYKATLIGDIIPAIKAKWPRSGKKRTIYIQQDNAKPHVSVDDPDIM-AAGRSGGWDIRMRCQPPNSPDLNVLDLGYFRSIQSLQYQTECRGVEALLDTVNSAFSAMKADTLSKIFMTLQTCMECITRANGGNNYKTPHRGKDALKKTGQLPVS 317          
BLAST of mRNA_H-paniculata_contig5187.12526.1 vs. uniprot
Match: UPI0020091A08 (uncharacterized protein LOC125206097 n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI0020091A08)

HSP 1 Score: 119 bits (298), Expect = 1.370e-27
Identity = 79/256 (30.86%), Postives = 122/256 (47.66%), Query Frame = 1
Query:    1 ITFRSGFQIIHIDEAWFNQIRDRDRVRMFPGEERVGSSNVQHKSHVPKVMFICAVSRPDPSRD----FDGNIRIWRFCVIKQAQRNSAQRERGQQYEFDVTIDAEWYQEWC--KDFLSASKE*MPWLEGEEMVAQKDGANPHMRKDTPQKLNELGRDGGWNINF------SPDLSINDVGFFASLKSRVWREPYGTIDDLVEGVKSMYDAYEAETLERVWKRLFKRYNQVLKALGGSDFEVQHAETKERQRAGSLP 732
            + F     I+HIDE WF   +  DR  + P E+    S  + K ++ KVMF+CAVSRP    +    +DG + I+ F     AQR S  R+RG      +T   +     C     + A K   P    +E+  Q+D A PH+    P+    +    G+ I+       SPD +I D+GFF +++S   ++P   +D+LVE V   Y+    +TL RV+  L     Q+L+  G + ++V H      +R G LP
Sbjct:  161 VHFHGMHNIVHIDEKWFYMTKTSDRYYLLPDEDEPYRS-CKSKRYITKVMFMCAVSRPQFDSEGQPTYDGKVGIFPFTEAVPAQRKSKNRDRGTLETKPITTLNKEVMRGCIIHKIIPAIKAKWPDWASKEIYIQQDNATPHITATDPE-FQAIANSDGFKIHLICQPPNSPDTNILDLGFFRAIQSLQHQKPCRNVDELVENVCKAYEELTPQTLNRVFLSLQACLTQILQFRGDNSYKVPHMNKDRLERTGGLP 414          
BLAST of mRNA_H-paniculata_contig5187.12526.1 vs. uniprot
Match: A0A6A4ECW5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4ECW5_9STRA)

HSP 1 Score: 117 bits (293), Expect = 7.820e-27
Identity = 79/253 (31.23%), Postives = 127/253 (50.20%), Query Frame = 1
Query:   19 FQIIHIDEAWFNQIRDRDRVRMFPGEERVGSSNVQHKSHVPKVMFICAVSRPDPSRD----FDGNIRIWRFCVIKQAQRNSAQRERGQQYEFDV-TIDAEWYQEWCKD-FLSASKE*MP-WLEGEEMVAQKDGANPHMRKDTPQKLNELGRDGGWNINF------SPDLSINDVGFFASLKSRVWREPYGTIDDLVEGVKSMYDAYEAETLERVWKRLFKRYNQVLKALGGSDFEVQHAETKERQRAGSLPKS 738
            + ++H+DE WFN+ +D+    + PGE  V     + K  + K MF+ AV+RP    +    FDG I IW F     AQ +S  R  G     ++ T++ E Y+ +  +  + A K   P W +   +V Q+D A PH +   P  L   G   GWNI        SPDL+  D+G+FAS+++  +RE    I  L++ ++  Y A E   L+ +   L      V++A G +++++ HA   + +R G LP S
Sbjct:  192 YNVVHVDEKWFNEDKDKKVFYLLPGET-VPHRERKSKRFIGKTMFLAAVARPRFDNNGQVLFDGKIGIWDFTHKVDAQHSSKNRPAGTLETKNLDTVNREVYKRYLLEHIIPAIKSKWPVWDKSSPIVIQQDNATPHCQPTDPDIL-AAGVADGWNIRLAFQPANSPDLNTLDLGYFASIQALPYREDCCDIVQLIQAIRKSYAALEVYKLDNITLTLQSSMECVMRAAGSNEYKLPHAGKSKIRREGKLPHS 442          
BLAST of mRNA_H-paniculata_contig5187.12526.1 vs. uniprot
Match: A0A397EFX4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EFX4_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.710e-26
Identity = 83/260 (31.92%), Postives = 127/260 (48.85%), Query Frame = 1
Query:    4 TFRSGFQIIHIDEAWFNQIRDRDRVRMFPGE---ERVGSSNVQHKSHVPKVMFICAVSRPDPSRD----FDGNIRIWRFCVIKQAQRNSAQRERGQQYEFDVTIDAEWYQEWC-KDFLSASKE*MPWLEGEEMVAQKDGANPHMRKDTPQKLNELGRDGGWNINF------SPDLSINDVGFFASLKSRVWREPYGTIDDLVEGVKSMYDAYEAETLERVWKRLFKRYNQVLKALGGSDFEVQHAETKERQRAGSLPKSV 741
             F S + ++H+DE WFN   DR +V + PGE   +R   S    K  +PKVMF+ AVSRP    D    FDG + +W F     A RNS  R  G      V ++A  Y+++     + A K   P    + +V Q D A PH    T  +L  +  D GWN         SPDL+  D+GFFAS++S  ++    T+DD++    + ++    + LE V+         +L+  GG+ + + H +    +RAG L ++V
Sbjct:   51 AFCSLWDVVHLDEKWFNADTDRRKVYLVPGEIPPQRTWKS----KRFIPKVMFLAAVSRPRFDHDRGVLFDGKVGMWPFVESIPAVRNSRNRPAGTMATSLVNVNATVYRDYVINKVIPAIKASFPSA-NKRVVLQHDNATPHS-SITDAELEAVSTD-GWNFVLRRQPPNSPDLNALDLGFFASIQSLQYKSMSRTVDDVIRSTLAAFEELSYQKLESVFLTFQSVMRLILEHDGGNHYVLPHLKKAALRRAGLLMQNV 303          
BLAST of mRNA_H-paniculata_contig5187.12526.1 vs. uniprot
Match: UPI001C27ABF3 (uncharacterized protein LOC121745765 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C27ABF3)

HSP 1 Score: 114 bits (286), Expect = 6.590e-26
Identity = 76/256 (29.69%), Postives = 121/256 (47.27%), Query Frame = 1
Query:    1 ITFRSGFQIIHIDEAWFNQIRDRDRVRMFPGEERVGSSNVQHKSHVPKVMFICAVSRP----DPSRDFDGNIRIWRFCVIKQAQRNSAQRERGQQYEFDVTIDAEWYQEWC--KDFLSASKE*MPWLEGEEMVAQKDGANPHMRKDTPQKLNELGRDGGWNINF------SPDLSINDVGFFASLKSRVWREPYGTIDDLVEGVKSMYDAYEAETLERVWKRLFKRYNQVLKALGGSDFEVQHAETKERQRAGSLP 732
            + ++S   ++HIDE WF   +  D   + P E+    S  + K ++ KVMF+CAVSRP    D    +DG + I+ F  +  AQR S  R RG      +    +     C     + A K   P    +++  Q+D A PH+          +    G+ I        SPD +I D+GFF +++S    +P  T+D+LV  V S++     +TL RV+ RL     ++L+  GG+ ++V H  T   QR   +P
Sbjct:  160 VQYQSMHNVVHIDEKWFYMTKVSDIYYLLPDEDEPYRS-CKSKRYITKVMFMCAVSRPQFGMDGQATYDGKVGIFPFTEVLLAQRKSKNRARGTMETKSINSVTKAVMRDCLINKIIPAIKAKWPVWASKDIYIQQDNATPHISA-MDADFQVVANSDGFKIQLICQPPNSPDTNILDLGFFRAIQSLQHEKPCNTVDELVGNVCSLFAELSPQTLNRVFLRLQACLTEILQCRGGNGYKVPHINTDRLQRTVGIP 413          
BLAST of mRNA_H-paniculata_contig5187.12526.1 vs. uniprot
Match: A0A485K8K3_9STRA (Aste57867_1744 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K8K3_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.150e-25
Identity = 83/258 (32.17%), Postives = 129/258 (50.00%), Query Frame = 1
Query:    1 ITFRSGFQIIHIDEAWFNQIRDRDRVRMFPGEERVGSSNVQHKSHVPKVMFICAVSRP--DPSRD--FDGNIRIWRFCVIKQAQRNSAQRERGQQYEFDVTIDAEWYQEWCKD-FLSASKE*MPWLEGEEMVAQKDGANPHMRKDTPQKLNELGRDGGWNINF------SPDLSINDVGFFASLKSRVWREPYGTIDDLVEGVKSMYDAYEAETLERVWKRLFKRYNQVLKALGGSDFEVQHAETKERQRAGSLPKSV 741
            + F S + +IHIDE WFN  +D+ +V + PGE     S  + K  + KVMF+   +RP  D SR   FDG + +W F  +  AQR S  R  G      V ++A  Y+E+  +  + A K   P    + +V Q D A PH    T   L  + +D GW          SPDL++ D+GFFAS++S  ++    T+DD++    + ++    E+LE V+         VL+  G + F++ H +    +RAG L  +V
Sbjct:   44 VEFDSLWDVIHIDEKWFNAEKDQRKVYLVPGESPQRRS-WKSKRFITKVMFLAPAARPRYDVSRGAVFDGKVGMWPFVSLVPAQRRSRNRPAGTLVTALVNVNATIYREFIVNKVVPAIKASFPSA-NKRVVLQHDNATPH-GSITDAVLASVSKD-GWTFVMRQQPPNSPDLNVLDLGFFASIQSLQYKSMSRTVDDVIRSTLAAFEHLSYESLENVFLTFQAVLRLVLEHDGDNHFKLPHLKKASLRRAGLLMSNV 297          
BLAST of mRNA_H-paniculata_contig5187.12526.1 vs. uniprot
Match: UPI001C264D25 (uncharacterized protein LOC121774216 n=2 Tax=Salvia splendens TaxID=180675 RepID=UPI001C264D25)

HSP 1 Score: 112 bits (280), Expect = 3.090e-25
Identity = 75/256 (29.30%), Postives = 121/256 (47.27%), Query Frame = 1
Query:    1 ITFRSGFQIIHIDEAWFNQIRDRDRVRMFPGEERVGSSNVQHKSHVPKVMFICAVSRP----DPSRDFDGNIRIWRFCVIKQAQRNSAQRERGQQYEFDVTIDAEWYQEWC--KDFLSASKE*MPWLEGEEMVAQKDGANPHMRKDTPQKLNELGRDGGWNINF------SPDLSINDVGFFASLKSRVWREPYGTIDDLVEGVKSMYDAYEAETLERVWKRLFKRYNQVLKALGGSDFEVQHAETKERQRAGSLP 732
            + F+    ++HIDE WF   +  DR  + P E+    S  + K ++ KVMF+CAVSRP    +    +DG + I+ F  +  AQR S  R RG      +    +     C     + A K   P    +++  Q+D A PH+    P+    + +  G++I        SPD +I D+GFF +++S    +P  T+D+LV  V S +     +TL +V+  L     ++L   GG+ ++V H       R G LP
Sbjct:  123 VQFQGMHNVVHIDEKWFYMTKVSDRYYLLPDEDEPYRS-CKSKRYITKVMFMCAVSRPQFDANGQATYDGKVGIFPFTEVLPAQRKSKNRARGTMETKAINSVTKAVMRDCLIHKIIPAIKAKWPVGASKDIYIQQDNATPHITAMDPE-FQAVAKSDGFDIQLICQPPNSPDTNILDLGFFRAIQSLQHEKPCKTVDELVGNVCSSFTELSPQTLNKVFLSLQACLTEILHCRGGNGYKVPHINKDRLHRNGGLP 376          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5187.12526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE7.770e-5345.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A4Z066_9STRA2.480e-3033.47Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W2NW41_PHYPR5.000e-2832.43HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Ph... [more]
W2QAD0_PHYPN1.310e-2732.05Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
UPI0020091A081.370e-2730.86uncharacterized protein LOC125206097 n=1 Tax=Salvi... [more]
A0A6A4ECW5_9STRA7.820e-2731.23Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]
A0A397EFX4_9STRA1.710e-2631.92Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
UPI001C27ABF36.590e-2629.69uncharacterized protein LOC121745765 n=1 Tax=Salvi... [more]
A0A485K8K3_9STRA1.150e-2532.17Aste57867_1744 protein n=1 Tax=Aphanomyces stellat... [more]
UPI001C264D253.090e-2529.30uncharacterized protein LOC121774216 n=2 Tax=Salvi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5187contigH-paniculata_contig5187:4123..4881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score79.7
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog161934.XP_010666796.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759,37YIB@33090,3GP0P@35493
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size741
Cds size390
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5187.12526.1prot_H-paniculata_contig5187.12526.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5187 4474..4881 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930512.9799984-UTR-H-paniculata_contig5187:4122..44731622930512.9799984-UTR-H-paniculata_contig5187:4122..4473Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5187 4123..4473 +
1691481326.0053668-UTR-H-paniculata_contig5187:4122..44731691481326.0053668-UTR-H-paniculata_contig5187:4122..4473Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5187 4123..4473 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930513.021185-CDS-H-paniculata_contig5187:4473..45961622930513.021185-CDS-H-paniculata_contig5187:4473..4596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5187 4474..4596 +
1691481326.01809-CDS-H-paniculata_contig5187:4473..45961691481326.01809-CDS-H-paniculata_contig5187:4473..4596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5187 4474..4596 +
1622930513.0450222-CDS-H-paniculata_contig5187:4614..48811622930513.0450222-CDS-H-paniculata_contig5187:4614..4881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5187 4615..4881 +
1691481326.0284986-CDS-H-paniculata_contig5187:4614..48811691481326.0284986-CDS-H-paniculata_contig5187:4614..4881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5187 4615..4881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5187.12526.1

>prot_H-paniculata_contig5187.12526.1 ID=prot_H-paniculata_contig5187.12526.1|Name=mRNA_H-paniculata_contig5187.12526.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
MPWLEGEEMVAQKDGANPHMRKDTPQKLNELGRDGGWNINFSPDLSINDV
GFFASLKSRVWREPYGTIDDLVEGVKSMYDAYEAETLERVWKRLFKRYNQ
VLKALGGSDFEVQHAETKERQRAGSLPKSV
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mRNA from alignment at H-paniculata_contig5187:4123..4881+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5187.12526.1 ID=mRNA_H-paniculata_contig5187.12526.1|Name=mRNA_H-paniculata_contig5187.12526.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=759bp|location=Sequence derived from alignment at H-paniculata_contig5187:4123..4881+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCACTTTCAGGAGCGGCTTCCAAATAATTCACATCGACGAAGCGTGGTT TAACCAAATTCGCGACAGGGATCGCGTCCGCATGTTCCCCGGGGAGGAAA GGGTGGGGTCCAGCAACGTACAGCACAAGAGTCACGTTCCTAAGGTGATG TTCATCTGCGCCGTTTCGCGTCCAGATCCTTCCCGCGATTTCGACGGCAA TATTAGAATCTGGCGTTTTTGCGTCATCAAGCAGGCGCAGAGGAATTCGG CCCAGCGTGAACGGGGGCAGCAATACGAGTTCGACGTGACCATTGATGCC GAGTGGTACCAGGAGTGGTGCAAGGACTTTCTCTCAGCATCGAAGGAATA GATGCCGTGGTTGGAGGGTGAGGAAATGGTCGCGCAGAAGGACGGAGCGA ACCCCCACATGAGGAAAGATACGCCGCAGAAGCTCAACGAACTCGGGAGG GACGGGGGTTGGAACATCAATTTCGTAACTTAGCTGGCGCAGTCACCAGA TCTCAGCATCAATGACGTGGGGTTCTTCGCATCTCTGAAAAGTAGGGTTT GGAGGGAGCCTTACGGTACGATAGACGACCTTGTGGAGGGGGTAAAGAGC ATGTACGATGCATACGAAGCGGAAACCTTAGAGAGGGTGTGGAAGAGACT CTTTAAGCGGTACAATCAGGTCTTGAAGGCGCTAGGAGGTAGCGATTTCG AGGTACAGCACGCCGAAACCAAGGAAAGGCAGCGTGCGGGAAGTCTGCCA AAATCGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig5187:4123..4881+

>mRNA_H-paniculata_contig5187.12526.1 ID=mRNA_H-paniculata_contig5187.12526.1|Name=mRNA_H-paniculata_contig5187.12526.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig5187:4123..4881+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGTGGTTGGAGGGTGAGGAAATGGTCGCGCAGAAGGACGGAGCGAA
CCCCCACATGAGGAAAGATACGCCGCAGAAGCTCAACGAACTCGGGAGGG
ACGGGGGTTGGAACATCAATTTCATGCCGTGGTTGGAGGGTGAGGAAATG
GTCGCGCAGAAGGACGGAGCGAACCCCCACATGAGGAAAGATACGCCGCA
GAAGCTCAACGAACTCGGGAGGGACGGGGGTTGGAACATCAATTTCTCAC
CAGATCTCAGCATCAATGACGTGGGGTTCTTCGCATCTCTGAAAAGTAGG
GTTTGGAGGGAGCCTTACGGTACGATAGACGACCTTGTGGAGGGGGTAAA
GAGCATGTACGATGCATACGAAGCGGAAACCTTAGAGAGGGTGTGGAAGA
GACTCTTTAAGCGGTACAATCAGGTCTTGAAGGCGCTAGGAGGTAGCGAT
TTCGAGGTACAGCACGCCGAAACCAAGGAAAGGCAGCGTGCGGGAAGTCT
GCCAAAATCGGTCTCACCAGATCTCAGCATCAATGACGTGGGGTTCTTCG
CATCTCTGAAAAGTAGGGTTTGGAGGGAGCCTTACGGTACGATAGACGAC
CTTGTGGAGGGGGTAAAGAGCATGTACGATGCATACGAAGCGGAAACCTT
AGAGAGGGTGTGGAAGAGACTCTTTAAGCGGTACAATCAGGTCTTGAAGG
CGCTAGGAGGTAGCGATTTCGAGGTACAGCACGCCGAAACCAAGGAAAGG
CAGCGTGCGGGAAGTCTGCCAAAATCGGTC
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