mRNA_H-paniculata_contig5185.12524.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5185.12524.1
Unique NamemRNA_H-paniculata_contig5185.12524.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5185.12524.1 vs. uniprot
Match: D7G9I0_ECTSI (C2H2 zinc finger, ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I0_ECTSI)

HSP 1 Score: 497 bits (1280), Expect = 1.490e-164
Identity = 321/598 (53.68%), Postives = 377/598 (63.04%), Query Frame = 1
Query:   55 VVYCVIGDPNLQTRHLAVYNTGPAVGTDLATLRKVFEGYGTVERLECPDPRWSRVYMSF-------------------------------------DKVESAVRAKAERNRPPEVEERVRLGLPKAALVSDVFAPRPGEPCPVLGRWLKVAFADMRVR------VADRSKIKTRAGRADLLPEALRKFKALDALETGGAASHDSRQTPCPLCARLCGGQRGLRMHLIGAHPADLRDRDHLVQLLKAGCALIPLAPAKSLPDGPTMPTESGENDAYSAEYLGGGGDTDGIPPPLTNASQSSLPPSSSPRVGAGAAAKGRASVNLPPGFAAAREGNVERLRGLVEGGIGEWDVKTAVDRNGSVALDWAAGEGRLEVCRYLLEECGVDPAKKCLKRGRGEGRXXXXXXXXXXXXXXXXXXXDSPRPTEHISTLLTNRHSGGGFGTALR------CMDPNISVADGTTAMHWACWGAHLSTCKLLLKRGADHRLVNAYGCNMAHWCGLSGDVEVCRWLASPAEDGGAGGLDWGQAN-----RQXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPESAWGRDDGSYLPRDVARLAGHVDLADWL 1686
            +VY +     +QTRHL VYNTGPAVG D  TLR+VFE YG VER+ CP+P  +RV +SF                                     D+V SA RA+AERNRPPE+EERVR+G+P AA  SDVFAP PGEPCP+LGRWLKV+FAD+RVR                   A  +P  L  FKA DAL  GG AS D+R TPCPLC R CGGQRGLRMHL+GAHP +++DRDH VQLL+ G A +P   A     G  + T   ++D         GG                     +P VG            LPPGFAAAR G++  L+ LVE     W+ KTA+D+NGS  LDWAAGEGRLEVCRYLL ECGVD    C  RGRGEGR XXXXXXXXXXXXXXXXX ++PRP +  + +      GGG GT +        + P+++ A+GTT +HWACWGAHL+TC+LL +RGADHR VNAYGCN+AHWCGLSGDV+VCRWL+   E+GGAGGLDW + N       XXXXXXXXXXXXXXXXXXXXXXXXX   VP  AW RD+G Y P DVARLAGHVDLADW+
Sbjct:   54 LVYHLTKKVGIQTRHLVVYNTGPAVGVDEVTLRRVFEAYGEVERVCCPNPAAARVLISFHEIHGQMLVRHPVSSRPCPSRTTSGTAAYGGTLAERPDRVSSAARARAERNRPPEIEERVRVGVPGAAAASDVFAPTPGEPCPLLGRWLKVSFADVRVRHNGGXXXXXXXXXXXXXXXAPAVPSHLSGFKAFDALAAGGTASCDARPTPCPLCGRTCGGQRGLRMHLVGAHPLEVKDRDHFVQLLQRGSASLPPMEAP----GTDLATRRNDHDGVGQATEEDGG---------------------APAVGXXXXXXXXXXXXLPPGFAAARAGDLGALKRLVE--EEGWEPKTALDKNGSSPLDWAAGEGRLEVCRYLLHECGVDAGGACPTRGRGEGRTXXXXXXXXXXXXXXXXXLETPRPVDAAAAVSV---VGGGDGTLVSPGGERTFVSPDVTAAEGTTPLHWACWGAHLATCRLLFERGADHRSVNAYGCNVAHWCGLSGDVDVCRWLSRRVEEGGAGGLDWAKTNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVVPRRAWERDEGGYTPEDVARLAGHVDLADWI 621          
BLAST of mRNA_H-paniculata_contig5185.12524.1 vs. uniprot
Match: A0A6H5K2T6_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T6_9PHAE)

HSP 1 Score: 423 bits (1088), Expect = 2.650e-136
Identity = 265/546 (48.53%), Postives = 317/546 (58.06%), Query Frame = 1
Query:   55 VVYCVIGDPNLQTRHLAVYNTGPAVGTDLATLRKVFEGYGTVERLECPDPRWSRVYMSFDKVESAVRAKAERNRPPEVEERVRLGLPKAALVSDVFAPRPGEPCPVLGRWLKVAFADMRVRVADRSKIKTRAGRADLLPEALRKFKALDALETGGAASHDSRQTPCPLCARLCGGQRGLRMHLIGAHPADLRDRDHLVQLLKAGCALIPLAPAKSLPDGPTMPTESGENDAYSAEYLGGGGDTDGIPPPLTNASQSSLPPSSSPRVGAGAAAKGRASVNLPPGFAAAREGNVERLRGLVEGGIGEWDVKTAVDRNGSVALDWAAGEGRLEVCRYLLEECGVDPAKKCLKRGRGEGRXXXXXXXXXXXXXXXXXXXDSPRPTEHISTLLTNRHSGGGFGTALR------CMDPNISVADGTTAMHWACWGAHLSTCKLLLKRGADHRLVNAYGCNMAHWCGLSGDVEVCRWLASPAEDGGAGGLDWGQANRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXV-----PESAWGRDDGSYLPRDVARLA 1659
            +VY +     +QTRHL VYNTGP VG D  TLR+VFE YG VER+ CP+P  +RV +SF +V SA RA+AERNRPPE+EERVR+G+P AA  SDVFAP PGEPCP+LGRWLK   +  R R           G+       L  FKA DAL  GG AS D+R TPCPLC R CGGQRGLRMHL+GAHP +++DR+H VQLL+ G A +P   A   P        +G N        GGG                      +P V             L PGFAAAR G++  L+ LVE     W  KTA+D+NGS  LDWAAGEGRLEVCR  L                                       ++PRP +  + +      GGG GT +          P+++ A+GTT +HWACWGAHL+TC+LL +RGADHR VNAYGCN+AHWCGLSGDV+VCRWL+   E+GG GGLDW + N QXXXXXXXXXXXXXXXXXXX       XX      P  AW +D+G Y P DVARLA
Sbjct:   91 LVYHLTKKAGIQTRHLVVYNTGPVVGVDEVTLRRVFEAYGEVERVYCPNPAAARVLISFHEVSSAARARAERNRPPEIEERVRVGVPGAAAASDVFAPTPGEPCPLLGRWLKAGSSQRRRRRLQ--------GKLPAATRXLSGFKAFDALAAGGTASCDARPTPCPLCGRTCGGQRGLRMHLVGAHPLEVKDRNHFVQLLQRGSASLPPMEA---PGTDLATRRNGHNGIGQGTEEGGG----------------------APAVXXXXXXXXXXXXALLPGFAAARAGDLGALKRLVE--EEGWAPKTALDKNGSSPLDWAAGEGRLEVCRTSLXXXXXXXXXXXXX-----------------------LLLETPRPVDAAAAVSV---VGGGDGTLVSPGXXXXXXXPDVTAAEGTTPLHWACWGAHLATCRLLFERGADHRSVNAYGCNVAHWCGLSGDVDVCRWLSRRVEEGGPGGLDWAKTNLQXXXXXXXXXXXXXXXXXXXLAEQTTSXXXXXXXGPRRAWEKDEGGYTPEDVARLA 575          
BLAST of mRNA_H-paniculata_contig5185.12524.1 vs. uniprot
Match: A0A7S1BCG5_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BCG5_9STRA)

HSP 1 Score: 101 bits (251), Expect = 6.200e-19
Identity = 99/294 (33.67%), Postives = 124/294 (42.18%), Query Frame = 1
Query:  883 SVNLPPGF---AAAREGNVERLRGLVEGGIGEWDVKTAVDRNGSVALDWAAGEGRLEVCRYLLEECGVDPAKKCLKRGRGEGRXXXXXXXXXXXXXXXXXXXDSPRPTEHISTLLTNRHSGGGFGTALR---------CMDPNISVADGTTAMHWACWGAHLSTCKLLLKRGADHRLVNAYGCNMAHWC--GLSGDV-------EVCRWLASPAEDGGAGGLDWG-QANRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPESAWGRDDGSYLPRDVARLAGHVDLADWLQSDE 1698
            +V+L P     A A+ G+ + L+ L+E G+  +D K A D+NGS AL WAAG GRL  C YLL+ C   P    L R RG+ R   XXXXXXXXXXXXXXXX        +      R  GG  G   +          MD +    DGTTA  WA W +H+ T + L  RG D    N++GCN   WC  G   D                   D G G L    Q  +                             +     G D     P D+A + G +DLADWL   E
Sbjct:   82 AVSLVPSIDPMACAKTGDTDSLKKLIENGL--FDPKGARDKNGSTALMWAAGSGRLSTCAYLLDACRCSP----LDRQRGKNRGFRXXXXXXXXXXXXXXXXXXLL----VEDRRKERGEGGDAGETEKNEEAEASSSAMDVDTETDDGTTAFCWASWQSHVDTMRYLFSRGCDVHATNSFGCNAVMWCAQGSGNDTLSAXXXXXXXXXXXXXXXDNGHGVLHKAAQRGKWDVCQWLLDACNNNNVENDIVSDIDRPFHLAIDQMGPDAEECCPSDLAGMEGFLDLADWLSCKE 365          
BLAST of mRNA_H-paniculata_contig5185.12524.1 vs. uniprot
Match: K8EHJ6_9CHLO (PREDICTED: similar to ankyrin 2,3/unc44 n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EHJ6_9CHLO)

HSP 1 Score: 87.8 bits (216), Expect = 1.910e-14
Identity = 70/274 (25.55%), Postives = 101/274 (36.86%), Query Frame = 1
Query:  871 KGRASVNLPPGFAAAREGNVERLRGLVEGGIGEWDVKTAVDRNGSVALDWAAGEGRLEVCRYLLEECGVDPAKKCLKRGRGEGRXXXXXXXXXXXXXXXXXXXDSPRPTEHISTLLTNRHSGGGFGTALRCMDPNISVADGTTAMHWACWGAHLSTCKLLLK-RGADHRLVNAYGCNMAHWCGLSGDVEVCRWLASPAEDGGAGGLDWGQANRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPESAWGRDDGSYLPRDVARLAGHVDLADWLQ 1689
            K +A+  L P     +  NVE  R  +     + DV    D++GS  L W++G   LE+C++L +E G+DPA    K+GR                                                    D +  ++DGTT    A W  HL  C+ L+K    D    N Y CN  HW   SGDV++ ++L        A GLD   AN                              +      RD+  Y P D+A++ GH +LA WL+
Sbjct:  269 KKKATPALHPLLEICKTNNVENARQFLRENP-DADVNDICDQHGSNCLHWSSGSNALELCKFLCDEVGMDPAFAERKKGRAAX----------------------------XXXXXXXXXXXXXXXXXXXXXDKDCEMSDGTTPFMRAAWMGHLELCEYLVKVANCDIHRENKYRCNAVHWAAQSGDVKMLKYLR-------ALGLDVTSANVNGHSILHKSATKGFYDACVYLVEELDLPLL------RDNDGYGPEDMAKMEGHKELASWLK 500          
BLAST of mRNA_H-paniculata_contig5185.12524.1 vs. uniprot
Match: A0A7R9TTM5_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TTM5_MICPS)

HSP 1 Score: 83.6 bits (205), Expect = 5.190e-14
Identity = 75/272 (27.57%), Postives = 100/272 (36.76%), Query Frame = 1
Query:  898 PGFAAAREGNVERLRGLV-EGGIGEWDVKT-----AVDRNGSVALDWAAGEGRLEVCRYLLEECGVDPAKKCLKRGRGEGRXXXXXXXXXXXXXXXXXXXDSPRPTEHISTLLTNRHSGGGFGTALRCMDPNISVADGTTAMHWACW-GAHLSTCKLLLKRGADHRLVNAYGCNMAHWCGLSGDVEVCRWLASPAEDGGAGGLDWGQANRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPESAWGRDDGSYLPRDVARLAGHVDLADWLQS 1692
            PG  A   G++  +  LV E G   WD K+      VD  GS AL WAAGEG +++ RYL++  G DP +   KR R                          R                    A R +D +    DGTT    A W G  ++   L+   GAD   +N +GCN A W  ++GDVE    LA         G+D G  NR                                 A   D     P ++ARL G+ +LA WL +
Sbjct:   33 PGLLACARGDLREVARLVNEDG---WDPKSDVEGVGVDARGSCALHWAAGEGHVDIVRYLVDVVGEDPRRAQTKRDR--------------------------RGAXXXXXXXXXXXXXXXXTNAAR-VDADAPTTDGTTPFMLATWKGGSIAMRWLVDDAGADPTALNVFGCNAAQWAAMNGDVEALELLAEL-------GVDVGVLNRNGHSALHKAATKGRRGACEWLIDVAGLGLKHMRA---DADGNTPAEMARLEGYAELASWLSA 264          
BLAST of mRNA_H-paniculata_contig5185.12524.1 vs. uniprot
Match: A0A813FNY0_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FNY0_POLGL)

HSP 1 Score: 83.6 bits (205), Expect = 2.130e-13
Identity = 51/173 (29.48%), Postives = 74/173 (42.77%), Query Frame = 1
Query:  889 NLPPGFAAAREGNVERLRGLVEGGIGEWDVKTAVDRNGSVALDWAAGEGRLEVCRYLLEECGVDPAKKCLKRGRGEGRXXXXXXXXXXXXXXXXXXXDSPRPTEHISTLLTNRHSGGGFGTALRCMDPNISVADGTTAMHWACWGAHLSTCKLLLKRGADHRLVNAYGCNMAH 1407
            NL PG  AAR+G+++ L+ LV+GG   W   TA D +G+  L WAAG G + VCR+L+EE GVDP+++                                                      L+  D ++    G TA+  A W  HL   + L+   AD   +N++GCN  H
Sbjct:  129 NLDPGIRAARDGDLDELKRLVQGG--RWHPLTAADHHGNGPLHWAAGSGHVAVCRWLVEEAGVDPSRQ--------------------------NSQXXXXXXXXXXXXXXXXXXXXXXXELLKSDDVDVQTDGGDTALMLASWQGHLKVVEFLVAASADVNHLNSWGCNAMH 273          
BLAST of mRNA_H-paniculata_contig5185.12524.1 vs. uniprot
Match: C1EG68_MICCC (C2H2-type domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EG68_MICCC)

HSP 1 Score: 85.5 bits (210), Expect = 2.350e-13
Identity = 116/417 (27.82%), Postives = 145/417 (34.77%), Query Frame = 1
Query:  523 ASHDSRQTPCPLCARLCGGQRGLRMHLI---GAHPADLRD--RDHLVQLLKAGCALIPLAPAK-----SLPDGPTMPTESGEN-DAYSAEYLGGGGDTDGIPPPLTNASQSSLPPSSSPRVGAGAAAKGRASVNLPPGFAAAREGNVERLRGLV--EGGIGEWDVKTAVDRNGSVALDWAAGEGRLEVCRYLLEECGVDPAKKCLKRGRG-EGRXXXXXXXXXXXXXXXXXXXDS------PRPTEHISTLLTNRHSGGGFGTALR-------CMDPNISVADGTTAMHWACWGAHLSTCKLLLKRGADHRLVNAYGCNMAHWCGLSGDVEVCRWLASPAEDGGAGGLDWGQANRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPESAWGRDDGSYLPRDVARLAGHVDLADWLQS 1692
            A   + Q  C  C R   G R L  H     G H ++  D   D L  L        P A  +     S  D  T P  +  + D  +A   GGG   D +                         A G+      PG  AAR G+V+ LR LV  EG    WD   AVDR+GS AL WAAG GRL+  ++L+EE G DPA       R   GR                    S       R  E           G     A+R       C    ++      AM     GA L  C+ +   G   RL+NA G +  H     G  +VC WL       G GG D       XXXXX                       V  +    D+  + P D ARLAG   LA WL++
Sbjct:  166 ARRGAGQLRCSTCGRFVAGDRALWWHQKTRHGVHHSEAVDAVEDELRALSTTVVGSAPSAGFEPSTLGSATDASTPPGRTARSADDLAAGLAGGGEALDAL------------------------IASGKVEALPDPGLEAARRGDVDALRRLVKDEG----WDANAAVDRHGSGALLWAAGAGRLDAVKFLVEEAGTDPATTSQAGRRAYAGRTALHWAARNGHVHVMEYLVISRGVDVDARTAEXXXXXXXXXWRGR--VDAMRWLVEKGECRFGAVNTFGCNAAMWVVQGGAGLDACRYVRSLGVTFRLLNANGHSAVHKAAQRGRRDVCAWLL------GRGGDDDXXXXXXXXXXXDADAIVESDAPESDAEAAWARALVGSAHLAPDNEGFTPADHARLAGDARLATWLRA 546          
BLAST of mRNA_H-paniculata_contig5185.12524.1 vs. uniprot
Match: C1N3W7_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N3W7_MICPC)

HSP 1 Score: 82.0 bits (201), Expect = 1.360e-12
Identity = 74/272 (27.21%), Postives = 99/272 (36.40%), Query Frame = 1
Query:  898 PGFAAAREGNVERLRGLV-EGGIGEWDVKT-----AVDRNGSVALDWAAGEGRLEVCRYLLEECGVDPAKKCLKRGRGEGRXXXXXXXXXXXXXXXXXXXDSPRPTEHISTLLTNRHSGGGFGTALRCMDPNISVADGTTAMHWACW-GAHLSTCKLLLKRGADHRLVNAYGCNMAHWCGLSGDVEVCRWLASPAEDGGAGGLDWGQANRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPESAWGRDDGSYLPRDVARLAGHVDLADWLQS 1692
            PG  A   G++  +  LV E G   WD K+      VD  GS AL WAAGEG +++ RYL++  G DP +   KR R                          R                    A R +D +    DGTT    A W G  ++   L+   G D   +N +GCN A W  ++GDVE    LA         G+D G  NR                                 A   D     P ++ARL G+ +LA WL +
Sbjct:  273 PGLLACARGDLREVARLVNEDG---WDPKSDVEGVGVDARGSCALHWAAGEGHVDIVRYLVDVVGEDPRRAQTKRDR--------------------------RGAXXXXXXXXXXXXXXXXTNAAR-VDADAPTTDGTTPFMLATWKGGSIAMRWLVDDAGVDPTALNVFGCNAAQWAAMNGDVEALELLAEL-------GVDVGVLNRNGHSALHKAATKGRRGACEWLIDVAGLGLKHMRA---DADGNTPAEMARLEGYAELASWLSA 504          
BLAST of mRNA_H-paniculata_contig5185.12524.1 vs. uniprot
Match: A0A061SCH4_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SCH4_9CHLO)

HSP 1 Score: 77.4 bits (189), Expect = 2.780e-12
Identity = 70/257 (27.24%), Postives = 94/257 (36.58%), Query Frame = 1
Query:  928 VERLRGLVEGGIGEWDVKTAVDRNGSVALDWAAGEGRLEVCRYLLEEC--GVDPAKKCLKRGRGEGRXXXXXXXXXXXXXXXXXXXDSPRPTEHISTLLTNRHSGGGFGTALRCMDPNISVADGTTAMHWACWGAHLSTCKLLLKRGA-DHRLVNAYGCNMAHWCGLSGDVEVCRWLASPAEDGGAGGLDWGQANRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPESAWGRDDGSYLPRDVARLAGHVDLADWLQ 1689
            + +L  L   G   W  +  VDR+GS AL WAAG GRLEVC++L++EC   VD   K                         XXXX                H+G          DP   + DGT A+ WA +   LS    L    A D    N  GC   HW    G +  C WL        A G ++  AN+               X               +  W   +G  L  ++ R+ GH +LAD+L+
Sbjct:    4 LHKLWSLQVKGESTWHPEKIVDRHGSTALMWAAGNGRLEVCKFLIDECKVSVDQENKV-----------------------GXXXXXXXXXXXXXXXXXXLYHAGA---------DPQKQMKDGTRALDWAVFFGSLSVADWLAHELACDINAKNYLGCAPVHWAAAGGHISACEWLF-------ANGANFSXANQHSHGCLNKAAWKGHAXVVQWLLGDDGPCVTDQLYWLDLEGRTLV-ELTRIGGHHELADYLE 220          
BLAST of mRNA_H-paniculata_contig5185.12524.1 vs. uniprot
Match: A0A2R5GK30_9STRA (Ankyrin repeat domain-containing protein 17 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GK30_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.350e-11
Identity = 62/216 (28.70%), Postives = 80/216 (37.04%), Query Frame = 1
Query:  889 NLPPGFAAAREGNVERLRGLVEGGIGEWDVKTAVDRNGSVALDWAAGEGRLEVCRYLLEECGVDP--AKKCLKRGRGEGRXXXXXXXXXXXXXXXXXXXDSPRPTEHISTLLTNRHSGGGFGTALRCM-------------------DPNISVADGTTAMHWACWGAH----LSTCKLLLKRGADHRLVNAYGCNMAHWCGLSGDVEVCRWLASPA 1461
            +L P   A R G++E LR  V  G   WD   AVDRNG+  L WAAG G LEVC++L+ EC +DP  A +  +RG                        D   P + ++          G GT   C                     P  S + G     W          L+ C  LL+RG D   +N  G    H     G+  VC WL   A
Sbjct:  434 SLGPELDACRSGDLEALRKAVAAG---WDAHAAVDRNGANGLLWAAGFGNLEVCKFLVHECKLDPVNASQKARRGYSMRTALHWAARNGHMDVVRWLVEDQASPADAVT----------GDGTTPLCFXXXXXXXXXXXXXXXKAGASPATSNSFGCNLAMWVAQSPQHESALTLCDYLLERGVDFTRINHNGQGCLHKAAQRGNRAVCEWLLRKA 636          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5185.12524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G9I0_ECTSI1.490e-16453.68C2H2 zinc finger, ankyrin repeat protein n=1 Tax=E... [more]
A0A6H5K2T6_9PHAE2.650e-13648.53C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S1BCG5_9STRA6.200e-1933.67Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
K8EHJ6_9CHLO1.910e-1425.55PREDICTED: similar to ankyrin 2,3/unc44 n=1 Tax=Ba... [more]
A0A7R9TTM5_MICPS5.190e-1427.57Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A813FNY0_POLGL2.130e-1329.48Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
C1EG68_MICCC2.350e-1327.82C2H2-type domain-containing protein n=1 Tax=Microm... [more]
C1N3W7_MICPC1.360e-1227.21Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A061SCH4_9CHLO2.780e-1227.24Uncharacterized protein (Fragment) n=1 Tax=Tetrase... [more]
A0A2R5GK30_9STRA2.350e-1128.70Ankyrin repeat domain-containing protein 17 n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5185contigH-paniculata_contig5185:1845..13861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score504.6
Seed ortholog evalue5.9e-140
Seed eggNOG ortholog2880.D7G9I0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG0509@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size2183
Cds size1680
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930512.7482936-UTR-H-paniculata_contig5185:1844..23201622930512.7482936-UTR-H-paniculata_contig5185:1844..2320Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5185 1845..2320 -
1691481325.8880172-UTR-H-paniculata_contig5185:1844..23201691481325.8880172-UTR-H-paniculata_contig5185:1844..2320Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5185 1845..2320 -
1622930512.887398-UTR-H-paniculata_contig5185:13834..138611622930512.887398-UTR-H-paniculata_contig5185:13834..13861Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5185 13835..13861 -
1691481325.9796703-UTR-H-paniculata_contig5185:13834..138611691481325.9796703-UTR-H-paniculata_contig5185:13834..13861Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5185 13835..13861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930512.7675407-CDS-H-paniculata_contig5185:2320..25851622930512.7675407-CDS-H-paniculata_contig5185:2320..2585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5185 2321..2585 -
1691481325.900552-CDS-H-paniculata_contig5185:2320..25851691481325.900552-CDS-H-paniculata_contig5185:2320..2585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5185 2321..2585 -
1622930512.7812524-CDS-H-paniculata_contig5185:4489..47701622930512.7812524-CDS-H-paniculata_contig5185:4489..4770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5185 4490..4770 -
1691481325.9095163-CDS-H-paniculata_contig5185:4489..47701691481325.9095163-CDS-H-paniculata_contig5185:4489..4770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5185 4490..4770 -
1622930512.8010623-CDS-H-paniculata_contig5185:6671..67801622930512.8010623-CDS-H-paniculata_contig5185:6671..6780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5185 6672..6780 -
1691481325.91989-CDS-H-paniculata_contig5185:6671..67801691481325.91989-CDS-H-paniculata_contig5185:6671..6780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5185 6672..6780 -
1622930512.8189242-CDS-H-paniculata_contig5185:7515..79601622930512.8189242-CDS-H-paniculata_contig5185:7515..7960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5185 7516..7960 -
1691481325.9340935-CDS-H-paniculata_contig5185:7515..79601691481325.9340935-CDS-H-paniculata_contig5185:7515..7960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5185 7516..7960 -
1622930512.8374574-CDS-H-paniculata_contig5185:10272..104721622930512.8374574-CDS-H-paniculata_contig5185:10272..10472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5185 10273..10472 -
1691481325.943916-CDS-H-paniculata_contig5185:10272..104721691481325.943916-CDS-H-paniculata_contig5185:10272..10472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5185 10273..10472 -
1622930512.8573573-CDS-H-paniculata_contig5185:11866..120361622930512.8573573-CDS-H-paniculata_contig5185:11866..12036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5185 11867..12036 -
1691481325.957389-CDS-H-paniculata_contig5185:11866..120361691481325.957389-CDS-H-paniculata_contig5185:11866..12036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5185 11867..12036 -
1622930512.870819-CDS-H-paniculata_contig5185:13624..138341622930512.870819-CDS-H-paniculata_contig5185:13624..13834Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5185 13625..13834 -
1691481325.97015-CDS-H-paniculata_contig5185:13624..138341691481325.97015-CDS-H-paniculata_contig5185:13624..13834Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5185 13625..13834 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5185.12524.1prot_H-paniculata_contig5185.12524.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5185 2321..13834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5185.12524.1

>prot_H-paniculata_contig5185.12524.1 ID=prot_H-paniculata_contig5185.12524.1|Name=mRNA_H-paniculata_contig5185.12524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=560bp
MDDRAAGADVVYCVIGDPNLQTRHLAVYNTGPAVGTDLATLRKVFEGYGT
VERLECPDPRWSRVYMSFDKVESAVRAKAERNRPPEVEERVRLGLPKAAL
VSDVFAPRPGEPCPVLGRWLKVAFADMRVRVADRSKIKTRAGRADLLPEA
LRKFKALDALETGGAASHDSRQTPCPLCARLCGGQRGLRMHLIGAHPADL
RDRDHLVQLLKAGCALIPLAPAKSLPDGPTMPTESGENDAYSAEYLGGGG
DTDGIPPPLTNASQSSLPPSSSPRVGAGAAAKGRASVNLPPGFAAAREGN
VERLRGLVEGGIGEWDVKTAVDRNGSVALDWAAGEGRLEVCRYLLEECGV
DPAKKCLKRGRGEGRTALHWAARGGHEEVCRLLLDSPRPTEHISTLLTNR
HSGGGFGTALRCMDPNISVADGTTAMHWACWGAHLSTCKLLLKRGADHRL
VNAYGCNMAHWCGLSGDVEVCRWLASPAEDGGAGGLDWGQANRQGHTICH
KAALKGHRGLLKWLKQKTQEGVVPESAWGRDDGSYLPRDVARLAGHVDLA
DWLQSDEGC*
back to top

mRNA from alignment at H-paniculata_contig5185:1845..13861-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5185.12524.1 ID=mRNA_H-paniculata_contig5185.12524.1|Name=mRNA_H-paniculata_contig5185.12524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12017bp|location=Sequence derived from alignment at H-paniculata_contig5185:1845..13861- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTCTTCAAACGTTGCCTCTCCGGACATGGACGACCGAGCCGCAGGCGC GGACGTGGTGTATTGCGTCATCGGCGACCCTAACTTGCAAACGCGGCACC TCGCGGTCTACAACACAGGACCCGCGGTCGGGACGGACCTAGCCACGCTG CGGAAAGTGTTCGAGGGATACGGGACGGTGGAGCGACTAGAGTGCCCCGA TCCTAGATGGTCCCGGGTCTACATGTCTTTCGATAAGGTGGGTCTTAGGT ACTCGCGATAAGTAATTGTCCAATTGTTTGTGGTTGTAAATGGCGAGCGC AGCGTTGGCTCGGCACTTGGGAGGCTTGTCGGTGGCGCTCCAGGGTGTCA TGCTATGCACCAGCAGCAACAGCAGCAGTTGTGCGCGTAAGCAGTACAGC TTGAAAACAGGATTGGGCAGCCGAACCCAAGCCATAGAGATCGAGAATGA GCATCACATATAATGGAGCAAGCTCAGAGCTTGCTTGTACGGCCCATCGC TACTGTTTTTTCAAGCTCTATCTATCTATTGCTCATGTGTCCAACGTGAA AATAGTTTTTGATTTGGCTGGGAGGGAAAGCCTCCGTCCAGATGACGAAA CTTATTACCGTGAATCAGCGGGGATTTTCTTGTGTACAACGGGAAAAAGA GAAGGGCGCGGAAGCTGTAAAATATGAAACAGGATTGAGCGGCCGAACCC AAGTCATCGAGACCAAGAACGAGAATCAGATATACCCCACCCGTGTTACA GTACATGACAATATAGGCATATCGTGTAGGCAGATAAACCTCACACCGAG TACAGCTTTCGCCCTTGACGTCCACAGGAGAAGTAAAATGATCCTACTAT TCATCGCATAAATTTCCTAGGGCACGGGGGGGCTCTTCACGTTTTTTTCC CTCCGTGTGTCCTATTACGCAGGAATATAGTAAATACTGCTAAATGCTCA ATTTAGTAAATATTGGCCAATTCTTGGACTTATCCAACAAACCATTTAGC AGTATTTACTATAGTCCTCCGTAATAATAGCCAACAACCAATTTGTATAA CCAATCATCTACTCACAATACCCACCCATGCACACATCTATTTCACCAAG ATGAGCATTATTCAGAAATTTTAGTTTGTGCATTCAACAAGCGCATAATC AGGTGTCTTGTAGAGTTACGGGGGGGAAATGTCTCCGGTCGTAAGGAGTT AACCTTTTCACCTTGGATAGAGTTTCAGAACAAAAATGGCATCATCTCAG TGGGCAAAAAAATTTGCCCTAACGGCCTATCTGTGCAGCATATCCGATGT GCCTGTAGCTATGTGCCTTTTTGTCTAAACAGCGGTATCTCTCAATCTGT CCCCCGTGATCATATTATCTATCTCTACATTTTCTCATGTCTGAGGTGGG GATTAGACGGGCATTGAGTAAGGTTCCGGGGTAAAAGGGTGAAAGCAGAG GTCTTCCTTCTAACTTTGTAGAGTTGCTACGATTCCACATCCGTGTTAGA TTACATAGTAGAGAGAAGCGATTGTTGCACTTCGTCCGCTTGTCAGAACT CTGGCCAGGTTGAGATGAAAGGATAACTTGCAGAGGGGAGAGGGGAGAGG GGGGTGGCATACCGTACCCGTATCGACGCGATATGATCGCATGAAATCTG TACGTACGTAAGTACCGTAGCGATCCGGATTGTAAAGCTAAACCACTGGT TTATTTCACGGAGGAAGATGTCTAGAACAAGCAATTTTTATTTCTTGTAG TTACGGTTGTTTTTCTTGTTATTGTTTCCCGGACGATGGGCGGGATCGTT TGCTTTACGGCTGTGTTTAGCGCAGGTGGAGTCCGCAGTTAGGGCAAAGG CGGAGAGGAACCGACCACCAGAGGTAGAAGAACGCGTTCGTTTGGGCCTG CCCAAAGCGGCGCTGGTGAGCGATGTATTTGCTCCGAGACCTGGAGAACC GTGCCCCGTGCTCGGTCGATGGCTCAAGGTTGCCTTCGCGGACATGTCAG TGCTGCAGTGGAGACTAGATTAGCGTTTATTGGGAAGCGGGTCTGCCCTA GTCGATCCTCTGGAAAATTGCCATGATTTACAGCATACCTTTCCCTCGAT ATAGTTTGTCATTTGCTCACCAATGACAGGTGCTCTGTCTGTCTCACATG ATATATCACCCTGGTCATTTGCGAGTAGTGCCGCTGGTAAGGGCCAAATG GCACATGTGTTGACGCAATCATTTTATTCTGCCAGGAGTGGTCATGATCC GTATGTGTTCCAATCATATCCATGATTATGGCTGTCGCGGTTTTGCTGAA AGGCTTAGTTATTGTAACCCAGTGAAATCATGTTCCAGCGGCGGAAAGAC CCGAATACGCGTCGCGGTCAACAGAGTTAGTAGGCAGCGTTTCCTCCTGT CCGCTCCGGTCCTGTATGGTCCCCGTTCGGTCTACTCTCCACATGCGGCA GTTATACTGTGACTATTCTTCACCGAAATTTGACTGTCAACCTTGGCGGG CACTGTGTTGCCGACAACAAGGTTGGGTCGAGTATTTGCTGCACACTGCT GATGAACAGACGCAATAGTTTGTCTATGTCATTGTCTACAAAGTGAGGAG GGAGAAATAATGTCCTGTTAATCTTGCATACACATAGTGGATAAAGATTG TAAAATCAGGATTATCGCCTCTGGCAATTAGCGCGCGTTTTGCTCGATCT TTCCTTTTTGAAGCAGCCATCCAGGGCAGCTTACCCCCTAAAAGTCCTGA GCACCCGAGCCGCTACTATTAGCTCTGTACTAGATTGGTCCGGTGGACGA CCGTACATTGACACGATATGTAGAGGCTGCCGTCAATATTATCGTCAGTC GCACCGAGTAGCGCGGTGGTGTGCAGCATGGCACGGCACGACACGGCCGT TTTGTCGACTACCGTACGAGACTACGAGTGAACAAACCATACAGTGGTCA ACTCGACAAACCACGGTGACAGCGTTTTTCGGTTATCTAATAGGAAGTCA AAAGGTTTGATGGGTTAACCCCGAATTTATGAGCACGAATGGTGGGTCGA CATCATTTCGGAACACTTTTACTACTCTTGAAACACTCTTCGACGTCCAC ACCTCCTAAAATAACCGGATCCTTACGGCCAATGTACCTACTAGTACATG CGAGTGTAGAGAGCCAGTCACCTCTAAGCACATCGATCCATTGTTGTGCG CTCGTGTGGGCGGTGAGCTGTGCACTATTATTTAATACAGATCTACGTAG TGCGGATTTAATTTAACAGCCAAACGCGGAATGCTCAGGCGCAGCGGTGG CCACCTAAATTACCGTCCCAGTGCAACAGGATTTAGCACGTTCGCCCTCC ACTACCCTACCTCGATTTTTCTCTCTCTCCGATCACCAGGCGCGTACGCG TCGCCGATCGGAGTAAAATCAAGACTCGAGCGGGGCGCGCAGACCTTCTA CCGGAGGCATTGAGAAAATTCAAGGCGTTGGATGCGCTGGAGACTGGAGG TGCTGCATCCCACGACTCCCGGCAGACGCCGTGTCCACTTTGCGCACGCC TGTGCGGTGGCCAGCGTGGATTGCGAATGCACCTCATAGGTGAAACCCTA ACGCTGCGGCAAGCACGCTAGTTTTCAACGGGTACAGTACCTCGAGTGGA GATTGCAAGCTAGTTACAATGTGTACAGAGTAACCTCGATTAGAGACGGT CATTATAAACGGGAAATTATTCTATTCTGTAAGACGGTCAGATCGTCTTG GCACACCCTAAAGAATCCCTGTAGTATATGTTCAAGGACGCAGATATACG GTGAGTCGAGATTGAAAGCGTTCCTTCTTCGTTTTGTTGACTTTTCATGT AATGTACATACCCCAGCGTTCAAACGGGGTATCCCGTGTGTTCGGCTACA GTTGTGGATCCTACTGCACAGTGTTGGTAATGCTCGATTGGTCTAGGGCA TTATCTCCTAGCGAAGCCCAGGTTGGATTTTGGTGTTCAGTCTGATCAAT ACCTTGTCGTGTATTTACTCGCGTGACTTGGAGTTTGGTTTGGTTTCGAC TTGAATGGCTGGGATGGATCGAAGTGTCAGCAGCGGAAGTTACTTGACTG CAAACTTGTGTATGATCATAGATTCTGGTACGTGTAGGATTGGCGAACTC AATTGCAAAAAACACCTTACAATAGAACAAGTCTGAACTGAAAAATCCAC CACAAGAAAAAAACAGAAGCTTTTCTTAGGGGTGGTTTCTACGAAGGCGT TTTTTTCCCTTTTATTTTCTTTCTTTTTTCGGCCCCAATGACAAAAAAAA AACAGTGCTCGCGATGTGGGGGGGGAATTTTATAATATTGACGTTTTGAA GGCCAAGACGTCGAAATATCCATTATGTTACGTCATTTTCCGTGTGCCTC CTTCCAATGAAACGTCAACAACCGGGCGTACTGTAGCTTGCATGGCGAGA TGCTGCATTACCTGTACTGTAGTTTCGTGACCGGTCGTCTGCGCTCAGGC ATGTGACAAACACTCAGTTTTACTCTTTCTTTGAGACCTACTGCCCAATG CTATGATCCAGTCGCGTTTGCTAGCGCTGGTCCGTCTCTCAGCTGTATCA AACTCAGCGCCGTGAGGCAGCGAATCCTTGATTTTTTGCGGCATATTATC TTTGACCTTCATGGCAAAATGCTGGCCTATATCCAGTGTCGTGATACGCA GAGCTGTGTTGTGCTGGAGACAGCGGTGCGGTGAAACCGTGGATGATGAC AACTGTACTGTTTAATAATGACAGTTGTATGCCTGGTATAGGAAAATGTT CCGAACCGATATTCCCATCTAGTTTAGTTTTTGCACCTCTCGTTACGCGG TGGATTACAGCACGCACCAGGAGTCCTTTCTAAAGCTGGTATCACGGACT TCTCGAATCTGCCCTGACACGTGGTACACTCGTTGTTGGCGTTTCGTACA GCTTGGAAAACATTTGTTTATAAAATACAATTTCCGGATTACGTGAAATC GGCATCTTGGGTGCGAAGAGTCAACAGTGTATCAAAATTGGCCGATGCGT TAAAAATCTGATAACGAAAGCTTTTTCATTCAGTATTGATTTCAACGCAA GGAACCTACCCCACCCCCACATGAAATATAAATGAAGAAGCACTCCTCCG CAGTGAAGTACACACCTTTCGCCACATTTCGCTCGATACGAAATAATACT TTGAGAGTTGGTACGAGTACATAACAATAGGTTCCGCAACGGCAGGCGTA CCGCGAAGCAACGTGTACGTCGTGCTTCCGCTCAGTGCGAAGTGTGTTGG GGAACGATGGGTGGTGGCTGGGTCCTACAACAAAGATAGAAAATGTATCA TATGTATCATGTCATCTCGCATTGTCTGTACTGTACATGTATCGATATCA GAGATGCCGAGGCTATCCATCTACGGTTCCTTCGGTACGTGTCGAGCAAT ACATCGACACATGAAACATATTCATGTAGTTCATACCATATAGTGGCCAA AACACGTCTTGAACATATCTAGAAGTGCATCGATCGATCAAATTCCAAAC ACGATCGACGTTTCCCAGACTTGATTACGATATAGTCAATCAACACTCAG CCCCGTCTTGGACAACAACATATCCCCCGCATTTATCTCCTATTGATTTA TTTTTGCTACTAAGTATATACAAGTGAAGATTAAAGTTGCATGCATAACC TTCAAGGTGGGTACTGTACAATGGGGTTATTTTATGACGTTCAGAGGTAA GGTAGTTTAACTATGACAGGGTTAACTTACAAATAAGAACCCAGATAGTG ATTTTTTTTTTTTTTTTTTTTTTACATAGCGTCAGTCGTTGACATGAAAC GCTTCACTCCCCGCCCTGCCCGCCCGTCCGCTCGTCCACCCTTTTGAACA GGCGCGCATCCCGCCGACTTGCGTGACCGTGATCACTTAGTGCAGCTCCT CAAGGCAGGCTGCGCCTTGATCCCCCTAGCACCAGCCAAATCCCTACCGG ATGGGCCAACCATGCCTACCGAGAGTGGTGAAAATGATGCGTATTCTGCG GAATACCTTGGAGGTGGAGGGGACACAGACGGGATTCCCCCCCCCCTGAC AAACGCTTCGCAAAGCTCTCTGCCGCCGTCGTCGTCCCCCCGTGTGGGGG CAGGTGCCGCGGCGAAAGGACGGGCCAGCGTAAACCTGCCGCCCGGGTTT GCGGCGGCGCGCGAGGGGAACGTGGAGCGACTACGAGGGCTGGTGGAGGG GGGTATTGGAGAATGGGATGTCAAGACGGCTGTAGATAGGAACGGGTCCG TGGCTCTGGACTGGGCGGCTGGGGAGGGACGGCTCGAGGTTTGTAGGTAG GTGGGTGTTTGTTTGTTTTTTTTGTCGTGAGGGTAGGTAGGTGGGAGGGG GGGGGGGGGGGGGTGCGGAAGATAAAGCGGGGATGTGCAGAAGATAGTGA TAGTGCCACAAAACGATTCATGTGTTTTTTATTGTGTTGTAGGATTTTTG TTGTGTCGCTCCATGCGTGTACTTTTGATGCTGGGGCTGCCTGTTGTGCA CCTTATGTCTCCAACCTACGTATAACATGGTCCTCAGGTAGAGCCTACAG TACTAGCACACAAAAACGCAAAAGCGGCCACGAACGATAGTCATTGCGCA TGGCTGTATTGCTTGAACCGAAGAACATGCTGCGGCGGTGAGGTTGACGC TTTTCCACCTGATCGTCGCATCTCTGTCGATCTGCTGTTATTTTCGTGCC TTCCTGCCCCTGTTCGGATCGGTGCGCCAACGCGGTAAGAATGGATGATA ATCCGTAAGTAGTGTTGCGACCTCAGTGATGAGGCGTTCTTTGTGGGCAA ACACCTTCCATTTTCCCCTCGTTTCCTTTTTCAGTACTCCTACCTACGGT TGAGTTCGATTAAATAGTTTGGGATCTCGACATCTTGGGGATGGTGTCCA GTAGAGCAATTTCATGCCGGAAAGGATTTCGTCCTGAAAAAAAAAAATCT GTCGCTGAAGTTCCGACAGCCGGCCGTTTGTATCTCTTTTGAAGAAACGC ATTCGCTGCTTGCTGCCTTGGTTCTCCGCAGGTATCTACTGGAAGAATGC GGTGTGGATCCAGCGAAAAAATGCTTGAAGAGAGGGAGAGGCGAGGGAAG AACAGCTCTTCACTGGGCAGCTCGCGGTGGCCATGAGGAGGTAACTTCAT ATTAAGCAAATGAGCATCATTCGGTTGCGCCTGGTATAGAAAATCAGAAG TGCAAGGTGATCTCTCTTCTTCAGGCATTCCATCTGTCAGGCGATGTTGC AGGAAGTCAGATTCGCTCAATGTGGGCCTCACCTGGTTCAGTCGGTGTCG CGTTCACGTCTCTATTACGTGTCTCATGTGTCTTTGGCCTCTCTTATATG TGTATAAAGCCCCCTCGGAACCTGCTGTCAGGATCATAGCCCACGATACG TGAAGGCGTGTATATGGACAAACTTAACAAAAATGAAGGCGTCGAAATTG TAATCAAAATTCGGACGGACGTTGATTGGTTTGAGGGCACTGAAATATCT AACGAACCGCCTGTTGATGTTCTGAAACCCTTATTAGGCCTATTCAGGAA GCGCCCACAACAAAGAGTCAGAAATTGTGACAGTAGGACTGTTCTCAGAG ATGTTCTATATCTTTTTGGTTTTGAGGACCGACGCCCCGATGGGTAGGGT GACTCGTGTACAGAGTCGAGCTGGGAGTGTTTGCAGGAGGTTTACTCGGT TTGACTCGGAGACTACCTGGGTAAGAATTGAGTAGATTTTGCCTAGGTGC CTACCCGTCCGCGGAAACCTCAGTGATGACATCCCACGCAGGGATCGATA TTAGGTGAAAGCGGGGCGCACCGGGAAATCGGCAAAGCGCCGCACGAAAG CAGCAATGTATAAGTGCACGGCAGGGGTTCCTTCCTGATCTCCCGGGCAC CGAAAACAAAATAAAAATAATTTGGTTTGGTGGGCACACGTCTCTGGGGT CGAAAATTCTATCGTGTGAAAGCTCCCGATATCAGCTTCCAAGCACACTT GTCGAGATGATTGTGTATTTTTTCTTGGCCGCCAAACGCCATTTAATATG TTACAAAAAAATGTTCCGATGTTGGTTTTTCGTCCTTCATCTCGCCATCA ACCACAAATACACAAAATGAATGGATGTATTCGAGAAGCCTGTTATGTCA GCTTTTGAAAGATACCTGGTAGGTAGTGATTCACGTGCCCACCGGGCCTG CAAAGCCGAACAAAATGAAATGGCGGGTTGACATTTACTATTTTAAAGTC CGTAGGCGTACAATTTGTCATTATCCAGTTCGTTCTTGCACGTGTTGGAG ATACAAAATATGTACTAAATTCCGACCTTCCGCTAGTGTGCGGTAGGCGA TGGACAACGACCGCATTATCAGGTGGTCTGATTGTAGCTACGGACCAATA TCCATTGTACATGAAAAACAAAAAACGCAGTGGAACTAACCCGTTTGAGC TTTGCAACACACAAGTACTTTGGATGTGCCAACGAGCGCTACCAATCGCT CTCAAAAATCGGATCTCTGGTGACATTTCGTGCGAAGAATTGCCAGAATG GCGAATCCTTTTCTATCGGTGCTATGAACCATACCTGAAGAGGTTCCGAG ACGGCAATCTAGTCTGTAGTGTGCTGCATGCAAGTCTTGATGTCAACTGT CAACACCTGCGTCCAAGGACAGGCCTATACGTGAGACAAAGCAAGACAAC GCCGACAGGCAAACTCGGAGTCCGTAACCTGTAGTAGTGATCGAGATCAT GACGAGACTCAAGACTCAGCACTTGCAGGATACCTCGCAATAATTCTGAA ACTGTATTTTTCAGACATGTAAGGGTCCCAGCTAGCACGACATTCACCCT TATCGGGCCAATAAATTACCCGAGGGAGGACCAATAAATCACTCCATCTA TTGATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGATGAGGA CTTCAAGTAGCTGGACCAAGTGGCACGCGCGGAAGCCAGCGGTTAGTCAA CTCAATGGTGTCACCGACTGTTGTTTGTTTGATCACTACAGGTCTGCCGG CTTCTCCTAGACAGCCCAAGGCCGACGGAACACATCTCTACCCTACTTAC GAACCGACACAGCGGCGGCGGTTTCGGAACGGCCCTCCGTTGTATGGATC CCAATATTTCCGTCGCGGATGGCACTACCGCTATGCACTGGGCGTGCTGG GGAGCACATTTGTCCACGTGCAAGTTGCTCTTGAAACGCGGCGCGGATCA CCGGTTGGTCAACGCCTATGGGTGCAACATGGCGCACTGGTGTGGTCTCT CGGGGGACGTGGAAGTGTGCAGGTACCTACTACGTACCTTCCGTCTCCTA AACAAGTGCATGTGAAAACCGCCATTCAGTCGACGTTTGATGTAAAATAT GTGTGTCAAGTTTGGAGCTGCATGTTCGTCATACTCCACAGCCAATTCAC CCGGATGTTACACAGTGATGAAGTTGGTATGTTTCGGGTTCACCTGTTGT GAATGCTCACCTTTAGGTGTTATGGACTGGTTGTCTATTTCCATATTCCA GCCGGTTTCACAATTCATGGTTAATCATGTCTTGGAAGGACGAGACATTT TCGCTACAAGTTGAACAATTACGTCTCTTGTGTTTGCACAACAAGCCGAT GGTGCTAGACTTTTTTCTTTCCTCTGATACCTAGCTGCTATCGAACACAC CTATTTTGGAAAGAGTAGATTTTGTAAATTCAAAGATACAACTGGGGACG TATTTTCCAGGGGTATTCTTGGTAGCAATACCAAGGTAAAAAATACCGCG GTATTGCGCGGTGTTTGATACCGATACGGTGATAAACTGGATTTCCCATT TGCCGTTGCCGCGGTGCCAGAGCCAATTCCTGTTTACCGTACCGTGAAAC CCTGTTAGCGCACCGATACCGTGCCTTCAATCTACAAGCTTTATAAGTCG ATAGAACGGACTGTCGGAATAAATGAGTCGCCTCCTTGTAGATCTCCCCG TACAAACCGTTTACTATATGCACGGGGTTTATAGCTGTATTTTGTATCTT TCGCTTGGGTAAGGCTTGGGGACCAAAGTTCTGCACCAAATACCAGATAT CGTACCGCATGATACCGAGAAGAAAAAATACCATACCGTGCCGTACCGTA CCGCGTGGGTAAAAAACCGAATACCACTTATCGCTCATATACGGAGAAAT CTATACACCGTACCATGCTACCGATATACCGATTACTGTTTACCGACACG ATACCGAGAAAATCATGTACCGTGCCATTCATTCATTTTTGAAATACTGT TACCGCGAACACTGCTGATATTTTCATCCACAAGACGAAAACTAACTCAA AATTCTTGGCTCTGCTGGTAGATGCAGCTACTTTGTGGCAGGCGTGTCGT TTTAAAAGTCTTTTTTTTTTTTCGTTGTTGCTGCTGCTATTGCTGCGCAG TACTGAGCGGCGTCATTCTCTTATGACGTTATCTAGTGATGAACTAGCTA GCCGGATAGTTCCTGCTTGTATTTCCTGCCTGTTTGTACGGAATTTTAAG TTATTCTGACCGTTGTTTATTCCAGAAACGTTACCATCCGACGACAGCAT TCTGTAGACAACGTGCACTCACCACACCCTACAGCCATATCACACCCATC CCTCTGGCGCTACGTTTTACAAGGGTATTTCCATCCCAATGCTCAAGGAG CATCACATACCGGACGACCTTCAGTAGGGACTGGCGAGGGGGCGGGGGGG GCAACACGTACGCGTCTTGGCAAGGATAATTTCAACAACAGGACAGCGGA GACAACATTGGAATACGGGAGTCGGGCTACCTTGATATTTACCGAGCGCC GCTCCGCAAAACGGCTCGAAGGAAAATTCCAAATCAAAATCTATTCAACC ATGCGTTGTCGCATCCCTAGAGTTGCATAATGCACCATTCGGAATGGCCT AATGTCCTCTTGTTCTATGGGAAATATATATATATATGCCGAGCAGCTCA AATATTGAACAAATCAGCTGAACCCCCCCTCCCCCCCCCCCGCTGTCATA GCCCAACTCATGTTGTGAAACGTGTACACGTACAAGTAAAAGGATGCCAA CGACCAGCAGTCAAAATGGAGGTTAAATTGGAGTGTCTCAGTCAGTCTAC TTGATACAGTACAGCTGAGTGATCGATTCCGCAAATTAGCCAAACTAAGG AGGGAGGATTTGTTTTTGCACTCCAGATGGCTCGCAAGCCCAGCAGAAGA CGGAGGGGCTGGAGGATTAGACTGGGGCCAGGCCAATAGGCAAGGACACA CTATTTGTCACAAGGCCGCGCTCAAGGGTCACCGAGGATTGCTCAAGTGG CTCAAACAGAAGACTCAAGAAGGGGTTGTTCCCGAGAGCGCGTGGGGGCG AGATGATGGTAGTTACCTGCCGCGAGACGTGGCCAGGCTGGCAGGGCATG TTGATCTAGCCGATTGGTTGCAAAGCGACGAGGGTTGCTAAGCTGCTCAA CCCTTGCAGCCTTTAAACGCCGGAGGAGGCTGTTTTGGAAGTGAAGGAGG CGTCTTGGAGTCACTGTACGAGTACTGTGAATGGTAATTGTGGATAGAAC CATGCTAATCCCATGTCTAGCTGCATGCGCGGTGTTTACAGAACTGTTTG TCTGTCTGAACATCGGTAGCTTGTTTTATCCCGGTAATCGTGCCATAGGC GTAGTTTTCCCATATTTTTGAGGCCTCTACTCGGTTGACAGCTTTTTGTG TATATCTTGATGGACGAATAAAAAAGACAGGGTAAATGCTGAAGATTGGC GCTTAGCTGTCGTACTACAGTCCGACGATTTGCTCTTCATCAAGGCGTCC GAGAGGTAGAATTTCGCCTCTTGATGCCGGGACACTACTCCGTGATTTTT TAATTCCTCATCGCTTTTCTCGCGAAACAAGCGGTCTAGCGTATGTAGGG TCCCGTGGCAATCGCCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5185:1845..13861-

>mRNA_H-paniculata_contig5185.12524.1 ID=mRNA_H-paniculata_contig5185.12524.1|Name=mRNA_H-paniculata_contig5185.12524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3360bp|location=Sequence derived from alignment at H-paniculata_contig5185:1845..13861- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGACCGAGCCGCAGGCGCGGACGTGGTGTATTGCGTCATCGGCGA
CCCTAACTTGCAAACGCGGCACCTCGCGGTCTACAACACAGGACCCGCGG
TCGGGACGGACCTAGCCACGCTGCGGAAAGTGTTCGAGGGATACGGGACG
GTGGAGCGACTAGAGTGCCCCGATCCTAGATGGTCCCGGGTCTACATGTC
TTTCGATAAGATGGACGACCGAGCCGCAGGCGCGGACGTGGTGTATTGCG
TCATCGGCGACCCTAACTTGCAAACGCGGCACCTCGCGGTCTACAACACA
GGACCCGCGGTCGGGACGGACCTAGCCACGCTGCGGAAAGTGTTCGAGGG
ATACGGGACGGTGGAGCGACTAGAGTGCCCCGATCCTAGATGGTCCCGGG
TCTACATGTCTTTCGATAAGGTGGAGTCCGCAGTTAGGGCAAAGGCGGAG
AGGAACCGACCACCAGAGGTAGAAGAACGCGTTCGTTTGGGCCTGCCCAA
AGCGGCGCTGGTGAGCGATGTATTTGCTCCGAGACCTGGAGAACCGTGCC
CCGTGCTCGGTCGATGGCTCAAGGTTGCCTTCGCGGACATGTGGAGTCCG
CAGTTAGGGCAAAGGCGGAGAGGAACCGACCACCAGAGGTAGAAGAACGC
GTTCGTTTGGGCCTGCCCAAAGCGGCGCTGGTGAGCGATGTATTTGCTCC
GAGACCTGGAGAACCGTGCCCCGTGCTCGGTCGATGGCTCAAGGTTGCCT
TCGCGGACATGCGCGTACGCGTCGCCGATCGGAGTAAAATCAAGACTCGA
GCGGGGCGCGCAGACCTTCTACCGGAGGCATTGAGAAAATTCAAGGCGTT
GGATGCGCTGGAGACTGGAGGTGCTGCATCCCACGACTCCCGGCAGACGC
CGTGTCCACTTTGCGCACGCCTGTGCGGTGGCCAGCGTGGATTGCGAATG
CACCTCATAGGCGCGTACGCGTCGCCGATCGGAGTAAAATCAAGACTCGA
GCGGGGCGCGCAGACCTTCTACCGGAGGCATTGAGAAAATTCAAGGCGTT
GGATGCGCTGGAGACTGGAGGTGCTGCATCCCACGACTCCCGGCAGACGC
CGTGTCCACTTTGCGCACGCCTGTGCGGTGGCCAGCGTGGATTGCGAATG
CACCTCATAGGCGCGCATCCCGCCGACTTGCGTGACCGTGATCACTTAGT
GCAGCTCCTCAAGGCAGGCTGCGCCTTGATCCCCCTAGCACCAGCCAAAT
CCCTACCGGATGGGCCAACCATGCCTACCGAGAGTGGTGAAAATGATGCG
TATTCTGCGGAATACCTTGGAGGTGGAGGGGACACAGACGGGATTCCCCC
CCCCCTGACAAACGCTTCGCAAAGCTCTCTGCCGCCGTCGTCGTCCCCCC
GTGTGGGGGCAGGTGCCGCGGCGAAAGGACGGGCCAGCGTAAACCTGCCG
CCCGGGTTTGCGGCGGCGCGCGAGGGGAACGTGGAGCGACTACGAGGGCT
GGTGGAGGGGGGTATTGGAGAATGGGATGTCAAGACGGCTGTAGATAGGA
ACGGGTCCGTGGCTCTGGACTGGGCGGCTGGGGAGGGACGGCTCGAGGTT
TGTAGGCGCGCATCCCGCCGACTTGCGTGACCGTGATCACTTAGTGCAGC
TCCTCAAGGCAGGCTGCGCCTTGATCCCCCTAGCACCAGCCAAATCCCTA
CCGGATGGGCCAACCATGCCTACCGAGAGTGGTGAAAATGATGCGTATTC
TGCGGAATACCTTGGAGGTGGAGGGGACACAGACGGGATTCCCCCCCCCC
TGACAAACGCTTCGCAAAGCTCTCTGCCGCCGTCGTCGTCCCCCCGTGTG
GGGGCAGGTGCCGCGGCGAAAGGACGGGCCAGCGTAAACCTGCCGCCCGG
GTTTGCGGCGGCGCGCGAGGGGAACGTGGAGCGACTACGAGGGCTGGTGG
AGGGGGGTATTGGAGAATGGGATGTCAAGACGGCTGTAGATAGGAACGGG
TCCGTGGCTCTGGACTGGGCGGCTGGGGAGGGACGGCTCGAGGTTTGTAG
GTATCTACTGGAAGAATGCGGTGTGGATCCAGCGAAAAAATGCTTGAAGA
GAGGGAGAGGCGAGGGAAGAACAGCTCTTCACTGGGCAGCTCGCGGTGGC
CATGAGGAGGTATCTACTGGAAGAATGCGGTGTGGATCCAGCGAAAAAAT
GCTTGAAGAGAGGGAGAGGCGAGGGAAGAACAGCTCTTCACTGGGCAGCT
CGCGGTGGCCATGAGGAGGTCTGCCGGCTTCTCCTAGACAGCCCAAGGCC
GACGGAACACATCTCTACCCTACTTACGAACCGACACAGCGGCGGCGGTT
TCGGAACGGCCCTCCGTTGTATGGATCCCAATATTTCCGTCGCGGATGGC
ACTACCGCTATGCACTGGGCGTGCTGGGGAGCACATTTGTCCACGTGCAA
GTTGCTCTTGAAACGCGGCGCGGATCACCGGTTGGTCAACGCCTATGGGT
GCAACATGGCGCACTGGTGTGGTCTCTCGGGGGACGTGGAAGTGTGCAGG
TCTGCCGGCTTCTCCTAGACAGCCCAAGGCCGACGGAACACATCTCTACC
CTACTTACGAACCGACACAGCGGCGGCGGTTTCGGAACGGCCCTCCGTTG
TATGGATCCCAATATTTCCGTCGCGGATGGCACTACCGCTATGCACTGGG
CGTGCTGGGGAGCACATTTGTCCACGTGCAAGTTGCTCTTGAAACGCGGC
GCGGATCACCGGTTGGTCAACGCCTATGGGTGCAACATGGCGCACTGGTG
TGGTCTCTCGGGGGACGTGGAAGTGTGCAGATGGCTCGCAAGCCCAGCAG
AAGACGGAGGGGCTGGAGGATTAGACTGGGGCCAGGCCAATAGGCAAGGA
CACACTATTTGTCACAAGGCCGCGCTCAAGGGTCACCGAGGATTGCTCAA
GTGGCTCAAACAGAAGACTCAAGAAGGGGTTGTTCCCGAGAGCGCGTGGG
GGCGAGATGATGGTAGTTACCTGCCGCGAGACGTGGCCAGGCTGGCAGGG
CATGTTGATCTAGCCGATTGGTTGCAAAGCGACGAGGGTTGCTAAATGGC
TCGCAAGCCCAGCAGAAGACGGAGGGGCTGGAGGATTAGACTGGGGCCAG
GCCAATAGGCAAGGACACACTATTTGTCACAAGGCCGCGCTCAAGGGTCA
CCGAGGATTGCTCAAGTGGCTCAAACAGAAGACTCAAGAAGGGGTTGTTC
CCGAGAGCGCGTGGGGGCGAGATGATGGTAGTTACCTGCCGCGAGACGTG
GCCAGGCTGGCAGGGCATGTTGATCTAGCCGATTGGTTGCAAAGCGACGA
GGGTTGCTAA
back to top