mRNA_H-paniculata_contig5184.12523.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5184.12523.1
Unique NamemRNA_H-paniculata_contig5184.12523.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5184.12523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5184contigH-paniculata_contig5184:8525..9262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size738
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5184.12523.1prot_H-paniculata_contig5184.12523.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5184 8649..9107 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930512.382407-UTR-H-paniculata_contig5184:8524..86481622930512.382407-UTR-H-paniculata_contig5184:8524..8648Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5184 8525..8648 +
1691481325.7839684-UTR-H-paniculata_contig5184:8524..86481691481325.7839684-UTR-H-paniculata_contig5184:8524..8648Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5184 8525..8648 +
1622930512.5686705-UTR-H-paniculata_contig5184:9107..92621622930512.5686705-UTR-H-paniculata_contig5184:9107..9262Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5184 9108..9262 +
1691481325.8052711-UTR-H-paniculata_contig5184:9107..92621691481325.8052711-UTR-H-paniculata_contig5184:9107..9262Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5184 9108..9262 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930512.394801-CDS-H-paniculata_contig5184:8648..91071622930512.394801-CDS-H-paniculata_contig5184:8648..9107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5184 8649..9107 +
1691481325.7969036-CDS-H-paniculata_contig5184:8648..91071691481325.7969036-CDS-H-paniculata_contig5184:8648..9107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5184 8649..9107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5184.12523.1

>prot_H-paniculata_contig5184.12523.1 ID=prot_H-paniculata_contig5184.12523.1|Name=mRNA_H-paniculata_contig5184.12523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
MSVAETAAKTSFFNTTPLEYVVAQVLNSCPKLDRRQCDVSCRPSFLLQKV
LLQSCIGPIEQTKTKIPLMYCSRSVLAVVLIYYGRVRCLVMLSQIVVLTC
TVALEEKKFTAMTSDYTIFSDVWKGGVFRISLAVSFKMFNFCLLNYIKKK
KV*
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mRNA from alignment at H-paniculata_contig5184:8525..9262+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5184.12523.1 ID=mRNA_H-paniculata_contig5184.12523.1|Name=mRNA_H-paniculata_contig5184.12523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=738bp|location=Sequence derived from alignment at H-paniculata_contig5184:8525..9262+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACTGCGCATCCTCGAGGTCTCTCATCACCTCCGCCATATGGTTGACCA
ATGCTGGCTTCGGTAGCTCTCTCTTGGTAGGCCGACCATCAGCTGTTCTT
CAAAAGTACACTTTCGTCAGCGACATGTCAGTCGCTGAAACAGCAGCCAA
AACAAGTTTCTTCAATACTACACCTCTTGAGTACGTCGTCGCACAAGTAT
TAAATTCTTGTCCAAAACTCGACCGCCGGCAATGTGATGTATCGTGCAGG
CCGAGTTTTTTGCTTCAAAAGGTCTTGTTGCAATCATGCATAGGTCCAAT
AGAGCAGACGAAAACAAAGATACCGTTAATGTACTGTTCCAGATCAGTCC
TTGCTGTTGTGTTGATTTACTACGGACGGGTACGTTGTCTAGTGATGCTC
TCGCAAATTGTAGTTTTAACCTGTACTGTCGCATTGGAAGAGAAGAAGTT
CACAGCCATGACAAGCGATTACACGATTTTTTCCGATGTTTGGAAGGGAG
GTGTTTTTAGGATTTCTCTGGCGGTGTCCTTCAAAATGTTCAACTTCTGT
CTGCTCAATTATATTAAAAAAAAGAAGGTGTAACAATGTTTCGAGGGGTG
TTGAATGGCATATCGGTCAGATGAACACTGACTAGGCTGGAGTCTGAGCT
AACTCGCCATGCTGTACCGAAGAGTCAGATTGGATATATTCACGTTGTGA
ATGTTTTATTTCCCCCTTTGACAAATGTAGGTGGTGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig5184:8525..9262+

>mRNA_H-paniculata_contig5184.12523.1 ID=mRNA_H-paniculata_contig5184.12523.1|Name=mRNA_H-paniculata_contig5184.12523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig5184:8525..9262+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGTCGCTGAAACAGCAGCCAAAACAAGTTTCTTCAATACTACACC
TCTTGAGTACGTCGTCGCACAAGTATTAAATTCTTGTCCAAAACTCGACC
GCCGGCAATGTGATGTATCGTGCAGGCCGAGTTTTTTGCTTCAAAAGGTC
TTGTTGCAATCATGCATAGGTCCAATAGAGCAGACGAAAACAAAGATACC
GTTAATGTACTGTTCCAGATCAGTCCTTGCTGTTGTGTTGATTTACTACG
GACGGGTACGTTGTCTAGTGATGCTCTCGCAAATTGTAGTTTTAACCTGT
ACTGTCGCATTGGAAGAGAAGAAGTTCACAGCCATGACAAGCGATTACAC
GATTTTTTCCGATGTTTGGAAGGGAGGTGTTTTTAGGATTTCTCTGGCGG
TGTCCTTCAAAATGTTCAACTTCTGTCTGCTCAATTATATTAAAAAAAAG
AAGGTGTAAATGTCAGTCGCTGAAACAGCAGCCAAAACAAGTTTCTTCAA
TACTACACCTCTTGAGTACGTCGTCGCACAAGTATTAAATTCTTGTCCAA
AACTCGACCGCCGGCAATGTGATGTATCGTGCAGGCCGAGTTTTTTGCTT
CAAAAGGTCTTGTTGCAATCATGCATAGGTCCAATAGAGCAGACGAAAAC
AAAGATACCGTTAATGTACTGTTCCAGATCAGTCCTTGCTGTTGTGTTGA
TTTACTACGGACGGGTACGTTGTCTAGTGATGCTCTCGCAAATTGTAGTT
TTAACCTGTACTGTCGCATTGGAAGAGAAGAAGTTCACAGCCATGACAAG
CGATTACACGATTTTTTCCGATGTTTGGAAGGGAGGTGTTTTTAGGATTT
CTCTGGCGGTGTCCTTCAAAATGTTCAACTTCTGTCTGCTCAATTATATT
AAAAAAAAGAAGGTGTAA
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