mRNA_H-paniculata_contig51833.12521.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51833.12521.1
Unique NamemRNA_H-paniculata_contig51833.12521.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig51833.12521.1 vs. uniprot
Match: A0A6H5JJH6_9PHAE (Kinesin motor domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJH6_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 6.430e-28
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    1 AGQEEVFMEVSEFVQSALDGFNVCLFSYGQTGSGKTHTMQGSGAGPMRGMIPRAMEQV 174
            AGQEEVF EVSEFVQSALDGFNVCLFSYGQTGSGKTHTMQGSGAG MRGMIPRAMEQV
Sbjct:  994 AGQEEVFTEVSEFVQSALDGFNVCLFSYGQTGSGKTHTMQGSGAGDMRGMIPRAMEQV 1051
[Close]
BLAST of mRNA_H-paniculata_contig51833.12521.1 vs. uniprot
Match: D7FUV4_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUV4_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 2.230e-27
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 AGQEEVFMEVSEFVQSALDGFNVCLFSYGQTGSGKTHTMQGSGAGPMRGMIPRAMEQ 171
            AGQEEVF EVSEFVQSALDGFNVCLFSYGQTGSGKTHTMQGSGAG MRGMIPRAMEQ
Sbjct:  866 AGQEEVFTEVSEFVQSALDGFNVCLFSYGQTGSGKTHTMQGSGAGDMRGMIPRAMEQ 922
[Close]
BLAST of mRNA_H-paniculata_contig51833.12521.1 vs. uniprot
Match: A0A835YR54_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR54_9STRA)

HSP 1 Score: 107 bits (267), Expect = 7.150e-26
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    1 AGQEEVFMEVSEFVQSALDGFNVCLFSYGQTGSGKTHTMQGSGAGPMRGMIPRAMEQV 174
            AGQE VF EVSEFVQSALDG+NVCLFSYGQTGSGKTHT+ GSGAGPMRG+IPRAMEQV
Sbjct:  215 AGQEAVFAEVSEFVQSALDGYNVCLFSYGQTGSGKTHTVVGSGAGPMRGIIPRAMEQV 272
[Close]
BLAST of mRNA_H-paniculata_contig51833.12521.1 vs. uniprot
Match: A0A4D9D7S4_9STRA (Kinesin motor domain-containing protein n=5 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7S4_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.740e-25
Identity = 51/58 (87.93%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    1 AGQEEVFMEVSEFVQSALDGFNVCLFSYGQTGSGKTHTMQGSGAGPMRGMIPRAMEQV 174
            AGQE VF EVSEFVQSALDG+NVCLFSYGQTGSGKTHTMQG G+GPM+G+IPRAMEQV
Sbjct:  784 AGQEVVFAEVSEFVQSALDGYNVCLFSYGQTGSGKTHTMQGFGSGPMKGIIPRAMEQV 841
[Close]
BLAST of mRNA_H-paniculata_contig51833.12521.1 vs. uniprot
Match: F0YB34_AURAN (Kinesin motor domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB34_AURAN)

HSP 1 Score: 104 bits (259), Expect = 4.580e-25
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    4 GQEEVFMEVSEFVQSALDGFNVCLFSYGQTGSGKTHTMQGSGAGPMRGMIPRAMEQV 174
            GQE VF EV+EFVQSALDG+ VCLFSYGQTGSGKTHTMQG+G GPMRG+IPRAMEQV
Sbjct:  129 GQERVFTEVAEFVQSALDGYQVCLFSYGQTGSGKTHTMQGTGTGPMRGIIPRAMEQV 185
[Close]
BLAST of mRNA_H-paniculata_contig51833.12521.1 vs. uniprot
Match: A0A7S1ZMB3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZMB3_TRICV)

HSP 1 Score: 98.6 bits (244), Expect = 6.120e-25
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    4 GQEEVFMEVSEFVQSALDGFNVCLFSYGQTGSGKTHTMQGSGAGPMRGMIPRAMEQV 174
            GQE VF EVSE VQSALDG+NVCLFSYGQTGSGKTHTMQGSG G MRG+IPR+++QV
Sbjct:   43 GQESVFEEVSELVQSALDGYNVCLFSYGQTGSGKTHTMQGSGNGAMRGVIPRSIQQV 99
[Close]
BLAST of mRNA_H-paniculata_contig51833.12521.1 vs. uniprot
Match: A0A8J2WU16_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WU16_9STRA)

HSP 1 Score: 104 bits (260), Expect = 8.240e-25
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    4 GQEEVFMEVSEFVQSALDGFNVCLFSYGQTGSGKTHTMQGSGAGPMRGMIPRAMEQV 174
            GQEEVF EVSEFVQSALDG+ VCL SYGQTGSGKTHTMQG+G+GPMRG+IPRAMEQV
Sbjct:  609 GQEEVFGEVSEFVQSALDGYQVCLLSYGQTGSGKTHTMQGAGSGPMRGIIPRAMEQV 665
[Close]
BLAST of mRNA_H-paniculata_contig51833.12521.1 vs. uniprot
Match: A0A7S2KNS5_9STRA (Kinesin-like protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KNS5_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.100e-24
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 AGQEEVFMEVSEFVQSALDGFNVCLFSYGQTGSGKTHTMQGSGAGPMRGMIPRAMEQV 174
            AGQE VF EVS+FVQSALDG+NVCLFSYGQTGSGKTHTMQGSG G MRG+IPRA+EQ+
Sbjct:  512 AGQESVFTEVSDFVQSALDGYNVCLFSYGQTGSGKTHTMQGSGNGAMRGIIPRAVEQI 569
[Close]
BLAST of mRNA_H-paniculata_contig51833.12521.1 vs. uniprot
Match: A0A7S2HLT2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HLT2_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.230e-24
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    4 GQEEVFMEVSEFVQSALDGFNVCLFSYGQTGSGKTHTMQGSGAGPMRGMIPRAMEQV 174
            GQ+ VF + SEF+QSALDG+NVCLF+YGQTGSGKTHTMQGSG G MRG+IPRA+EQV
Sbjct:  112 GQDAVFAKASEFIQSALDGYNVCLFAYGQTGSGKTHTMQGSGVGQMRGIIPRAIEQV 168
[Close]
BLAST of mRNA_H-paniculata_contig51833.12521.1 vs. uniprot
Match: B8LEK0_THAPS (Kinesin-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LEK0_THAPS)

HSP 1 Score: 100 bits (249), Expect = 6.660e-24
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 AGQEEVFMEVSEFVQSALDGFNVCLFSYGQTGSGKTHTMQGSGAGPMRGMIPRAMEQV 174
            AGQE VF EVSEFVQSALDG+NVCLFSYGQTGSGKTHTMQG+G   MRG+IPR++EQ+
Sbjct:   61 AGQEAVFEEVSEFVQSALDGYNVCLFSYGQTGSGKTHTMQGTGTASMRGLIPRSIEQI 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51833.12521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJH6_9PHAE6.430e-2896.55Kinesin motor domain-containing protein (Fragment)... [more]
D7FUV4_ECTSI2.230e-2796.49Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A835YR54_9STRA7.150e-2689.66P-loop containing nucleoside triphosphate hydrolas... [more]
A0A4D9D7S4_9STRA1.740e-2587.93Kinesin motor domain-containing protein n=5 Tax=Mo... [more]
F0YB34_AURAN4.580e-2585.96Kinesin motor domain-containing protein (Fragment)... [more]
A0A7S1ZMB3_TRICV6.120e-2582.46Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A8J2WU16_9STRA8.240e-2587.72Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2KNS5_9STRA2.100e-2484.48Kinesin-like protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2HLT2_9STRA2.230e-2478.95Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
B8LEK0_THAPS6.660e-2481.03Kinesin-like protein (Fragment) n=1 Tax=Thalassios... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51833contigH-paniculata_contig51833:406..579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue9e-19
Seed eggNOG ortholog2880.D7FUV4
KEGG koko:K07936,ko:K10406
KEGG Pathwayko03008,ko03013,ko05166,ko05169,map03008,map03013,map05166,map05169
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03016,ko03019,ko03036,ko04031,ko04147,ko04812
Exons1
Model size174
Cds size153
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930512.3322575-UTR-H-paniculata_contig51833:405..4261622930512.3322575-UTR-H-paniculata_contig51833:405..426Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51833 406..426 +
1691481325.7646942-UTR-H-paniculata_contig51833:405..4261691481325.7646942-UTR-H-paniculata_contig51833:405..426Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51833 406..426 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930512.347228-CDS-H-paniculata_contig51833:426..5791622930512.347228-CDS-H-paniculata_contig51833:426..579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51833 427..579 +
1691481325.7747054-CDS-H-paniculata_contig51833:426..5791691481325.7747054-CDS-H-paniculata_contig51833:426..579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51833 427..579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51833.12521.1prot_H-paniculata_contig51833.12521.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51833 427..579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51833.12521.1

>prot_H-paniculata_contig51833.12521.1 ID=prot_H-paniculata_contig51833.12521.1|Name=mRNA_H-paniculata_contig51833.12521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
MEVSEFVQSALDGFNVCLFSYGQTGSGKTHTMQGSGAGPMRGMIPRAMEQ
V
back to top

mRNA from alignment at H-paniculata_contig51833:406..579+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51833.12521.1 ID=mRNA_H-paniculata_contig51833.12521.1|Name=mRNA_H-paniculata_contig51833.12521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig51833:406..579+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGGGCAAGAGGAGGTTTTTATGGAGGTATCGGAGTTCGTACAGTCCGC
CCTGGACGGCTTCAACGTGTGCCTGTTCAGCTACGGGCAAACTGGCTCTG
GCAAGACCCACACTATGCAGGGAAGCGGGGCCGGGCCAATGCGCGGGATG
ATCCCCCGCGCTATGGAGCAGGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig51833:406..579+

>mRNA_H-paniculata_contig51833.12521.1 ID=mRNA_H-paniculata_contig51833.12521.1|Name=mRNA_H-paniculata_contig51833.12521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig51833:406..579+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGTATCGGAGTTCGTACAGTCCGCCCTGGACGGCTTCAACGTGTG
CCTGTTCAGCTACGGGCAAACTGGCTCTGGCAAGACCCACACTATGCAGG
GAAGCGGGGCCGGGCCAATGCGCGGGATGATCCCCCGCGCTATGGAGCAG
GTGATGGAGGTATCGGAGTTCGTACAGTCCGCCCTGGACGGCTTCAACGT
GTGCCTGTTCAGCTACGGGCAAACTGGCTCTGGCAAGACCCACACTATGC
AGGGAAGCGGGGCCGGGCCAATGCGCGGGATGATCCCCCGCGCTATGGAG
CAGGTG
back to top