prot_H-paniculata_contig5183.12520.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5183.12520.1
Unique Nameprot_H-paniculata_contig5183.12520.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length69
Homology
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BLAST of mRNA_H-paniculata_contig5183.12520.1 vs. uniprot
Match: D8LKJ6_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ6_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 3.520e-16
Identity = 42/69 (60.87%), Postives = 55/69 (79.71%), Query Frame = 0 
Query:    1 ELLRKGFATFDPSGEGLVAASSLESIVQYTGIP-IDSSEMQALLEELKAEPDTSISLPEFTEIVAMLLA 68
            + LR+ FATFD SGEGLV+  +L  I+++ GI  I+  E+ ALLEEL+A+PDT+ISLPE TEIVA+LLA
Sbjct:  278 DTLRESFATFDQSGEGLVSVLALVDILEHAGITDIEPEEVHALLEELQADPDTAISLPEMTEIVALLLA 346
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5183.12520.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKJ6_ECTSI3.520e-1660.87N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.238.10coord: 1..66
e-value: 8.6E-8
score: 34.1
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 3..64

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5183contigH-paniculata_contig5183:2933..3428 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5183.12520.1mRNA_H-paniculata_contig5183.12520.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5183 2933..3428 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5183.12520.1 ID=prot_H-paniculata_contig5183.12520.1|Name=mRNA_H-paniculata_contig5183.12520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
ELLRKGFATFDPSGEGLVAASSLESIVQYTGIPIDSSEMQALLEELKAEP
DTSISLPEFTEIVAMLLA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair