mRNA_H-paniculata_contig11977.1252.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11977.1252.1
Unique NamemRNA_H-paniculata_contig11977.1252.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11977.1252.1 vs. uniprot
Match: A0A812N2C8_9DINO (ZIFL2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812N2C8_9DINO)

HSP 1 Score: 79.7 bits (195), Expect = 6.570e-16
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 IGYYAGFLTSAFTVGRLTTSYAWGYFADRFGRKPVFIISMIAIAVSSIGFGLSTTFAMAVMWR 189
            +GYYAG++ +AF  GRL TSY WG+F+DR+GRKPV +I + A+ V SIGFG S  FA A+  R
Sbjct:   31 LGYYAGYIGAAFMAGRLCTSYGWGWFSDRYGRKPVMVIGITAMVVFSIGFGCSFNFAWALAMR 93          
BLAST of mRNA_H-paniculata_contig11977.1252.1 vs. uniprot
Match: A0A7R9UB92_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB92_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 8.450e-15
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    4 GYYAGFLTSAFTVGRLTTSYAWGYFADRFGRKPVFIISMIAIAVSSIGFGLSTTFAMAVMWR 189
            GYYAGF+ +AF  GR  +S+ WG +ADR+GRKPV +I   +IAV S+ FG+STTF+MA++ R
Sbjct:   69 GYYAGFVGAAFMAGRTVSSFFWGIYADRYGRKPVILIGCASIAVLSVLFGVSTTFSMALVTR 130          
BLAST of mRNA_H-paniculata_contig11977.1252.1 vs. uniprot
Match: A0A7S1CJ88_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CJ88_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.220e-14
Identity = 31/63 (49.21%), Postives = 51/63 (80.95%), Query Frame = 1
Query:    1 IGYYAGFLTSAFTVGRLTTSYAWGYFADRFGRKPVFIISMIAIAVSSIGFGLSTTFAMAVMWR 189
            +G+YAG++ SAF VGR  TS+AWG ++D+ GR+PV ++ +++I V++  FGLS++FAMA++ R
Sbjct:   91 LGFYAGWIGSAFMVGRTCTSFAWGTWSDKHGRRPVLLLGLVSIVVTAAAFGLSSSFAMAIVAR 153          
BLAST of mRNA_H-paniculata_contig11977.1252.1 vs. uniprot
Match: A0A2P5EW84_TREOI (Tetracycline resistance protein/multidrug resistance protein n=1 Tax=Trema orientale TaxID=63057 RepID=A0A2P5EW84_TREOI)

HSP 1 Score: 71.6 bits (174), Expect = 2.970e-14
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 IGYYAGFLTSAFTVGRLTTSYAWGYFADRFGRKPVFIISMIAIAVSSIGFGLSTTFAMAVMWR 189
            IG+YAGF+ +AF  GR  TS+ WG  ADR+GRKPV I S+I++   +  FGLST F MA+  R
Sbjct:   14 IGFYAGFVGAAFMFGRFLTSFLWGMLADRYGRKPVIIFSIISVVTFNTLFGLSTNFWMALFMR 76          
BLAST of mRNA_H-paniculata_contig11977.1252.1 vs. uniprot
Match: B9SN10_RICCO (Carbohydrate transporter, putative n=1 Tax=Ricinus communis TaxID=3988 RepID=B9SN10_RICCO)

HSP 1 Score: 74.3 bits (181), Expect = 5.130e-14
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 IGYYAGFLTSAFTVGRLTTSYAWGYFADRFGRKPVFIISMIAIAVSSIGFGLSTTFAMAVMWR 189
            IGYYAG++ SAF +GR  TS  WG  ADR+GRKPV +  MIA+ V +  FGLST+F MA+  R
Sbjct:   88 IGYYAGYVGSAFMLGRALTSVLWGVIADRYGRKPVIVFGMIAVIVFNTLFGLSTSFWMAISLR 150          
BLAST of mRNA_H-paniculata_contig11977.1252.1 vs. uniprot
Match: A0A804JEM8_MUSAM (MFS domain-containing protein n=3 Tax=Musa TaxID=4640 RepID=A0A804JEM8_MUSAM)

HSP 1 Score: 73.9 bits (180), Expect = 6.930e-14
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 1
Query:    1 IGYYAGFLTSAFTVGRLTTSYAWGYFADRFGRKPVFIISMIAIAVSSIGFGLSTTFAMAVMWR 189
            IG+YAGF+ SAF +GR +TS  WG  ADR+GR+PV +IS++A+ V +  FGLST + MA+M R
Sbjct:   78 IGFYAGFVGSAFMLGRASTSILWGMVADRYGRRPVIMISLLAVIVFNTLFGLSTRYWMAIMTR 140          
BLAST of mRNA_H-paniculata_contig11977.1252.1 vs. uniprot
Match: A0A835Z5M2_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5M2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 9.700e-14
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    4 GYYAGFLTSAFTVGRLTTSYAWGYFADRFGRKPVFIISMIAIAVSSIGFGLSTTFAMAVMWR 189
            GYYAGF+  AF +GR  +SY WG F+D++GRKP  +I   ++ V S+GFGLST   +AV+ R
Sbjct:    4 GYYAGFIAGAFMLGRFASSYPWGRFSDKYGRKPALLIGAASVCVFSLGFGLSTELWVAVLMR 65          
BLAST of mRNA_H-paniculata_contig11977.1252.1 vs. uniprot
Match: I1M0H9_SOYBN (MFS domain-containing protein n=8 Tax=Glycine subgen. Soja TaxID=1462606 RepID=I1M0H9_SOYBN)

HSP 1 Score: 73.2 bits (178), Expect = 1.300e-13
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 IGYYAGFLTSAFTVGRLTTSYAWGYFADRFGRKPVFIISMIAIAVSSIGFGLSTTFAMAVMWR 189
            I  YAG++ SAF +GR  TS  WG  ADRFGRKPVF+I +IA+ + +  FGLST+F MAV+ R
Sbjct:   78 ISSYAGYVGSAFMLGRCLTSLLWGTIADRFGRKPVFVIGIIAVVIFNTLFGLSTSFWMAVIMR 140          
BLAST of mRNA_H-paniculata_contig11977.1252.1 vs. uniprot
Match: A0A1Y2HGS2_9FUNG (Major facilitator superfamily domain-containing protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HGS2_9FUNG)

HSP 1 Score: 73.2 bits (178), Expect = 1.320e-13
Identity = 31/63 (49.21%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 IGYYAGFLTSAFTVGRLTTSYAWGYFADRFGRKPVFIISMIAIAVSSIGFGLSTTFAMAVMWR 189
            +G Y G+LT+   +G L +SY WG FADR+GR+PV +I M +  V ++ FG S+++AMAV+WR
Sbjct:   55 LGVYTGWLTACMMIGALMSSYPWGLFADRYGRRPVMLIGMFSTGVLALLFGFSSSYAMAVVWR 117          
BLAST of mRNA_H-paniculata_contig11977.1252.1 vs. uniprot
Match: A0A4S8K5P0_MUSBA (MFS domain-containing protein n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8K5P0_MUSBA)

HSP 1 Score: 73.2 bits (178), Expect = 1.330e-13
Identity = 35/63 (55.56%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 IGYYAGFLTSAFTVGRLTTSYAWGYFADRFGRKPVFIISMIAIAVSSIGFGLSTTFAMAVMWR 189
            IG+YAGF+ SAF +GR+ TS  WG  ADR+GRKPV +IS+I+I + +  FGLST++ MA++ R
Sbjct:  295 IGFYAGFVGSAFMIGRVLTSVFWGIVADRYGRKPVIVISIISIILFNTMFGLSTSYWMALVSR 357          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11977.1252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812N2C8_9DINO6.570e-1657.14ZIFL2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A7R9UB92_9STRA8.450e-1556.45Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1CJ88_9STRA2.220e-1449.21Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A2P5EW84_TREOI2.970e-1453.97Tetracycline resistance protein/multidrug resistan... [more]
B9SN10_RICCO5.130e-1457.14Carbohydrate transporter, putative n=1 Tax=Ricinus... [more]
A0A804JEM8_MUSAM6.930e-1455.56MFS domain-containing protein n=3 Tax=Musa TaxID=4... [more]
A0A835Z5M2_9STRA9.700e-1451.61Major facilitator superfamily domain-containing pr... [more]
I1M0H9_SOYBN1.300e-1357.14MFS domain-containing protein n=8 Tax=Glycine subg... [more]
A0A1Y2HGS2_9FUNG1.320e-1349.21Major facilitator superfamily domain-containing pr... [more]
A0A4S8K5P0_MUSBA1.330e-1355.56MFS domain-containing protein n=1 Tax=Musa balbisi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11977contigH-paniculata_contig11977:7353..7544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score72.4
Seed ortholog evalue8.6e-11
Seed eggNOG ortholog3988.XP_002527379.1
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Protein ZINC INDUCED
EggNOG OGs37P1M@33090,3GGHM@35493,4JKRH@91835,KOG2615@1,KOG2615@2759
COG Functional cat.S
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928912.1951153-CDS-H-paniculata_contig11977:7352..75441622928912.1951153-CDS-H-paniculata_contig11977:7352..7544Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11977 7353..7544 -
1691480664.870204-CDS-H-paniculata_contig11977:7352..75441691480664.870204-CDS-H-paniculata_contig11977:7352..7544Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11977 7353..7544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11977.1252.1prot_H-paniculata_contig11977.1252.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11977 7353..7544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11977.1252.1

>prot_H-paniculata_contig11977.1252.1 ID=prot_H-paniculata_contig11977.1252.1|Name=mRNA_H-paniculata_contig11977.1252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
IGYYAGFLTSAFTVGRLTTSYAWGYFADRFGRKPVFIISMIAIAVSSIGF
GLSTTFAMAVMWR*
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mRNA from alignment at H-paniculata_contig11977:7353..7544-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11977.1252.1 ID=mRNA_H-paniculata_contig11977.1252.1|Name=mRNA_H-paniculata_contig11977.1252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at H-paniculata_contig11977:7353..7544- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGGTTATTACGCGGGGTTCTTGACGAGTGCGTTTACGGTCGGGCGGCT GACGACGAGTTATGCGTGGGGATACTTCGCCGATCGCTTCGGACGAAAAC CTGTCTTCATTATAAGCATGATCGCCATCGCCGTGTCTTCCATCGGCTTC GGCCTCTCTACCACCTTCGCAATGGCCGTCATGTGGAGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11977:7353..7544-

>mRNA_H-paniculata_contig11977.1252.1 ID=mRNA_H-paniculata_contig11977.1252.1|Name=mRNA_H-paniculata_contig11977.1252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig11977:7353..7544- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGGTTATTACGCGGGGTTCTTGACGAGTGCGTTTACGGTCGGGCGGCT
GACGACGAGTTATGCGTGGGGATACTTCGCCGATCGCTTCGGACGAAAAC
CTGTCTTCATTATAAGCATGATCGCCATCGCCGTGTCTTCCATCGGCTTC
GGCCTCTCTACCACCTTCGCAATGGCCGTCATGTGGAGGTAGATAGGTTA
TTACGCGGGGTTCTTGACGAGTGCGTTTACGGTCGGGCGGCTGACGACGA
GTTATGCGTGGGGATACTTCGCCGATCGCTTCGGACGAAAACCTGTCTTC
ATTATAAGCATGATCGCCATCGCCGTGTCTTCCATCGGCTTCGGCCTCTC
TACCACCTTCGCAATGGCCGTCATGTGGAGGTAG
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