mRNA_H-paniculata_contig5183.12520.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5183.12520.1
Unique NamemRNA_H-paniculata_contig5183.12520.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5183.12520.1 vs. uniprot
Match: D8LKJ6_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ6_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 3.520e-16
Identity = 42/69 (60.87%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 ELLRKGFATFDPSGEGLVAASSLESIVQYTGIP-IDSSEMQALLEELKAEPDTSISLPEFTEIVAMLLA 204
            + LR+ FATFD SGEGLV+  +L  I+++ GI  I+  E+ ALLEEL+A+PDT+ISLPE TEIVA+LLA
Sbjct:  278 DTLRESFATFDQSGEGLVSVLALVDILEHAGITDIEPEEVHALLEELQADPDTAISLPEMTEIVALLLA 346
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5183.12520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKJ6_ECTSI3.520e-1660.87N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5183contigH-paniculata_contig5183:2933..3428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMORN motif
Ec32 orthologEc-16_003200.1
Exons2
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930512.1392107-CDS-H-paniculata_contig5183:2932..30461622930512.1392107-CDS-H-paniculata_contig5183:2932..3046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5183 2933..3046 +
1691481325.7467911-CDS-H-paniculata_contig5183:2932..30461691481325.7467911-CDS-H-paniculata_contig5183:2932..3046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5183 2933..3046 +
1622930512.2935646-CDS-H-paniculata_contig5183:3335..34281622930512.2935646-CDS-H-paniculata_contig5183:3335..3428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5183 3336..3428 +
1691481325.756112-CDS-H-paniculata_contig5183:3335..34281691481325.756112-CDS-H-paniculata_contig5183:3335..3428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5183 3336..3428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5183.12520.1prot_H-paniculata_contig5183.12520.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5183 2933..3428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5183.12520.1

>prot_H-paniculata_contig5183.12520.1 ID=prot_H-paniculata_contig5183.12520.1|Name=mRNA_H-paniculata_contig5183.12520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
ELLRKGFATFDPSGEGLVAASSLESIVQYTGIPIDSSEMQALLEELKAEP
DTSISLPEFTEIVAMLLA*
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mRNA from alignment at H-paniculata_contig5183:2933..3428+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5183.12520.1 ID=mRNA_H-paniculata_contig5183.12520.1|Name=mRNA_H-paniculata_contig5183.12520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=496bp|location=Sequence derived from alignment at H-paniculata_contig5183:2933..3428+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAATTGCTCCGAAAGGGCTTCGCGACGTTTGACCCCTCTGGGGAGGGTCT
TGTGGCAGCATCATCCCTCGAGTCCATCGTGCAGTACACCGGGATCCCTA
TCGATTCCAGCGAGGTGAGTTCTCTTCTTGCCTATCCCTCCCAAAATCCA
AGGATGGGATACTGCAATACTTCTAATAAGGCAGCACGATCGCAAGATTC
AGGGTTACAATGTTACCCAATTCTAAGATAACGTTGGAGGGCTAAAGTCA
GTCGCCAACCTCAAGATTATTATGTAACTAATCGTCACGAACATCTGTGC
AAAGAGACCGTTCACACCCACCCAAGCACCATCTGTTCCGCCAATCACAC
CTCGATCGCTCCCTTCGTTCTGCCTACCGTTCGTGGTATATCTCCATGCT
CAGATGCAAGCATTGTTGGAAGAGTTGAAAGCGGAGCCGGACACATCAAT
TTCTTTGCCAGAGTTCACCGAGATTGTCGCGATGCTCTTGGCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5183:2933..3428+

>mRNA_H-paniculata_contig5183.12520.1 ID=mRNA_H-paniculata_contig5183.12520.1|Name=mRNA_H-paniculata_contig5183.12520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig5183:2933..3428+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAATTGCTCCGAAAGGGCTTCGCGACGTTTGACCCCTCTGGGGAGGGTCT
TGTGGCAGCATCATCCCTCGAGTCCATCGTGCAGTACACCGGGATCCCTA
TCGATTCCAGCGAGGAATTGCTCCGAAAGGGCTTCGCGACGTTTGACCCC
TCTGGGGAGGGTCTTGTGGCAGCATCATCCCTCGAGTCCATCGTGCAGTA
CACCGGGATCCCTATCGATTCCAGCGAGATGCAAGCATTGTTGGAAGAGT
TGAAAGCGGAGCCGGACACATCAATTTCTTTGCCAGAGTTCACCGAGATT
GTCGCGATGCTCTTGGCGTGAATGCAAGCATTGTTGGAAGAGTTGAAAGC
GGAGCCGGACACATCAATTTCTTTGCCAGAGTTCACCGAGATTGTCGCGA
TGCTCTTGGCGTGA
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