mRNA_H-paniculata_contig518.12516.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig518.12516.1
Unique NamemRNA_H-paniculata_contig518.12516.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig518.12516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig518contigH-paniculata_contig518:35500..35909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size410
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig518.12516.1prot_H-paniculata_contig518.12516.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig518 35578..35895 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930511.8429372-UTR-H-paniculata_contig518:35499..355771622930511.8429372-UTR-H-paniculata_contig518:35499..35577Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig518 35500..35577 +
1691481325.618887-UTR-H-paniculata_contig518:35499..355771691481325.618887-UTR-H-paniculata_contig518:35499..35577Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig518 35500..35577 +
1622930511.9111853-UTR-H-paniculata_contig518:35895..359091622930511.9111853-UTR-H-paniculata_contig518:35895..35909Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig518 35896..35909 +
1691481325.6364124-UTR-H-paniculata_contig518:35895..359091691481325.6364124-UTR-H-paniculata_contig518:35895..35909Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig518 35896..35909 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930511.8992782-CDS-H-paniculata_contig518:35577..358951622930511.8992782-CDS-H-paniculata_contig518:35577..35895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig518 35578..35895 +
1691481325.6276975-CDS-H-paniculata_contig518:35577..358951691481325.6276975-CDS-H-paniculata_contig518:35577..35895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig518 35578..35895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig518.12516.1

>prot_H-paniculata_contig518.12516.1 ID=prot_H-paniculata_contig518.12516.1|Name=mRNA_H-paniculata_contig518.12516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
MHSSFICSPSDFYYFISFIRLVRPYFMAARIGARRIWDSVPCGRHPFWLF
YGNVFSEICGAENGIRFCSKMSTEFERQIRVGLGLAYFSVHSGRKRGVWC
HELGC*
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mRNA from alignment at H-paniculata_contig518:35500..35909+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig518.12516.1 ID=mRNA_H-paniculata_contig518.12516.1|Name=mRNA_H-paniculata_contig518.12516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=410bp|location=Sequence derived from alignment at H-paniculata_contig518:35500..35909+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGCTGGTGGTGGTGGTAATACTGCTGGAGTAGTTTTCAAACGTGTATT
GTTGGACCACTCAGCCAGTCAGTCACTCATGCACTCATCATTTATTTGTT
CCCCAAGTGACTTTTATTATTTCATTTCTTTCATACGTCTCGTACGTCCA
TATTTTATGGCAGCACGGATCGGGGCAAGACGAATCTGGGATTCAGTTCC
ATGTGGTCGACATCCATTTTGGCTATTTTATGGGAATGTATTTAGCGAGA
TCTGTGGAGCTGAGAATGGTATTCGCTTCTGCTCGAAAATGTCAACCGAA
TTTGAGCGCCAGATCCGTGTTGGTTTGGGCCTCGCGTATTTCAGCGTTCA
TTCTGGTCGTAAAAGAGGCGTTTGGTGTCATGAGCTGGGCTGTTGAAGTA
GAGGGGAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig518:35500..35909+

>mRNA_H-paniculata_contig518.12516.1 ID=mRNA_H-paniculata_contig518.12516.1|Name=mRNA_H-paniculata_contig518.12516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig518:35500..35909+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACTCATCATTTATTTGTTCCCCAAGTGACTTTTATTATTTCATTTC
TTTCATACGTCTCGTACGTCCATATTTTATGGCAGCACGGATCGGGGCAA
GACGAATCTGGGATTCAGTTCCATGTGGTCGACATCCATTTTGGCTATTT
TATGGGAATGTATTTAGCGAGATCTGTGGAGCTGAGAATGGTATTCGCTT
CTGCTCGAAAATGTCAACCGAATTTGAGCGCCAGATCCGTGTTGGTTTGG
GCCTCGCGTATTTCAGCGTTCATTCTGGTCGTAAAAGAGGCGTTTGGTGT
CATGAGCTGGGCTGTTGAATGCACTCATCATTTATTTGTTCCCCAAGTGA
CTTTTATTATTTCATTTCTTTCATACGTCTCGTACGTCCATATTTTATGG
CAGCACGGATCGGGGCAAGACGAATCTGGGATTCAGTTCCATGTGGTCGA
CATCCATTTTGGCTATTTTATGGGAATGTATTTAGCGAGATCTGTGGAGC
TGAGAATGGTATTCGCTTCTGCTCGAAAATGTCAACCGAATTTGAGCGCC
AGATCCGTGTTGGTTTGGGCCTCGCGTATTTCAGCGTTCATTCTGGTCGT
AAAAGAGGCGTTTGGTGTCATGAGCTGGGCTGTTGA
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