mRNA_H-paniculata_contig518.12515.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig518.12515.1
Unique NamemRNA_H-paniculata_contig518.12515.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig518.12515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig518contigH-paniculata_contig518:29316..29660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size300
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930511.7913-UTR-H-paniculata_contig518:29315..293601622930511.7913-UTR-H-paniculata_contig518:29315..29360Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig518 29316..29360 +
1691481325.595928-UTR-H-paniculata_contig518:29315..293601691481325.595928-UTR-H-paniculata_contig518:29315..29360Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig518 29316..29360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930511.8063176-CDS-H-paniculata_contig518:29360..296601622930511.8063176-CDS-H-paniculata_contig518:29360..29660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig518 29361..29660 +
1691481325.611162-CDS-H-paniculata_contig518:29360..296601691481325.611162-CDS-H-paniculata_contig518:29360..29660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig518 29361..29660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig518.12515.1prot_H-paniculata_contig518.12515.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig518 29361..29660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig518.12515.1

>prot_H-paniculata_contig518.12515.1 ID=prot_H-paniculata_contig518.12515.1|Name=mRNA_H-paniculata_contig518.12515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
MGTVVGMDLSTRTALDMCRQLYVCSNTAFGNKKSKLFRSCILGLFPPRRL
RRLFVFRDAPVIFETVVRIAAARLAISTPYPQLTVPGIGQDRYYCDWIG*
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mRNA from alignment at H-paniculata_contig518:29316..29660+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig518.12515.1 ID=mRNA_H-paniculata_contig518.12515.1|Name=mRNA_H-paniculata_contig518.12515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at H-paniculata_contig518:29316..29660+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATAGGGAGCCACCGCTATTCAGACCGACAATACAACAGCAAAGATGGG
TACAGTAGTAGGCATGGATCTATCCACGAGGACTGCACTCGACATGTGTC
GTCAGCTGTATGTTTGTTCGAACACGGCCTTCGGAAACAAAAAGAGTAAA
CTATTTCGTTCGTGCATACTCGGTCTATTTCCCCCTAGAAGACTACGACG
TCTCTTCGTATTCAGGGACGCTCCCGTGATTTTCGAAACAGTCGTACGTA
TCGCTGCTGCGCGATTGGCAATTTCTACCCCTTACCCGCAACTGACAGTA
CCAGGAATCGGGCAAGATCGATACTACTGCGATTGGATCGGTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig518:29316..29660+

>mRNA_H-paniculata_contig518.12515.1 ID=mRNA_H-paniculata_contig518.12515.1|Name=mRNA_H-paniculata_contig518.12515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig518:29316..29660+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTACAGTAGTAGGCATGGATCTATCCACGAGGACTGCACTCGACAT
GTGTCGTCAGCTGTATGTTTGTTCGAACACGGCCTTCGGAAACAAAAAGA
GTAAACTATTTCGTTCGTGCATACTCGGTCTATTTCCCCCTAGAAGACTA
CGACGTCTCTTCGTATTCAGGGACGCTCCCGTGATTTTCGAAACAGTCGT
ACGTATCGCTGCTGCGCGATTGGCAATTTCTACCCCTTACCCGCAACTGA
CAGTACCAGGAATCGGGCAAGATCGATACTACTGCGATTGGATCGGTTAG
ATGGGTACAGTAGTAGGCATGGATCTATCCACGAGGACTGCACTCGACAT
GTGTCGTCAGCTGTATGTTTGTTCGAACACGGCCTTCGGAAACAAAAAGA
GTAAACTATTTCGTTCGTGCATACTCGGTCTATTTCCCCCTAGAAGACTA
CGACGTCTCTTCGTATTCAGGGACGCTCCCGTGATTTTCGAAACAGTCGT
ACGTATCGCTGCTGCGCGATTGGCAATTTCTACCCCTTACCCGCAACTGA
CAGTACCAGGAATCGGGCAAGATCGATACTACTGCGATTGGATCGGTTAG
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