mRNA_H-paniculata_contig5176.12511.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5176.12511.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE) HSP 1 Score: 122 bits (307), Expect = 9.170e-30 Identity = 63/136 (46.32%), Postives = 88/136 (64.71%), Query Frame = 1
Query: 1 NHLHKWVQANEMQIGIEKDGVMAIKGFRTERLRREAQKCQLGGEQLPIVEENRYLGIKFTRNLKVSTMMVGRLDGGKKLVGKITPFSRNTSIPVPLKASVVRSIVVPQMLYEAEIYGMNKKITSRMQKYLNQTCRL 408
+H+ W+ NEM GI K GVMAI G RLR + +L GE LPIVE YLG++F R L V MM +L G+KLV +TP+ IPVPLK +VVR +++P++L+ AE++GM IT+R+Q Y+N+ R+
Sbjct: 774 DHISVWMAENEMSAGIHKCGVMAI-GHGRRRLRERPDRWKLAGETLPIVESYTYLGLEFNRRLDVEVMMGNKLAAGEKLVTLMTPYLLCRQIPVPLKVAVVRGVILPRLLFGAEVFGMRTSITNRLQVYVNRAYRM 908
BLAST of mRNA_H-paniculata_contig5176.12511.1 vs. uniprot
Match: L7JX89_TRAHO (RNA-directed DNA polymerase, Non LTR Retrotransposon (Fragment) n=1 Tax=Trachipleistophora hominis TaxID=72359 RepID=L7JX89_TRAHO) HSP 1 Score: 68.2 bits (165), Expect = 1.170e-10 Identity = 35/133 (26.32%), Postives = 69/133 (51.88%), Query Frame = 1
Query: 7 LHKWVQANEMQIGIEKDGVMAIKGFRTERLRREAQKCQLGGEQLPIVEENRYLGIKFTRNLKVSTMMVGRLDGGKKLVGKITPFSRNTSIPVPLKASVVRSIVVPQMLYEAEIYGMNKKITSRMQKYLNQTCR 405
L W +M + I K G+M E + + +P VE RYLGI RNL + T++ R + ++ + I P IP+P++ ++++S+++P + +E+YGM+ + T+ +Q+ +++ R
Sbjct: 480 LEDWCDKWKMDLNISKCGLMVFNS-------NEQRAIKYKNANIPTVERYRYLGIPINRNLDLKTVINDRKEKAQQALMIIRPLISRIEIPLPIRVTLIKSVLIPTATFGSELYGMSSQRTAPIQRVIDKAVR 605
BLAST of mRNA_H-paniculata_contig5176.12511.1 vs. uniprot
Match: A0A1R0GP03_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0GP03_9FUNG) HSP 1 Score: 67.8 bits (164), Expect = 1.620e-10 Identity = 39/132 (29.55%), Postives = 71/132 (53.79%), Query Frame = 1
Query: 13 KWVQANEMQIGIEKDGVMAIKGFRTERLRREAQKCQLGGEQLPIVEENRYLGIKFTRNLKVSTMMVGRLDGGKKLVGKITPFSRNTSIPVPLKASVVRSIVVPQMLYEAEIYGMNKKITSRMQKYLNQTCRL 408
+W + EMQ+ K GVM I G +T L + G +P VE +YLG+ F +++ + ++ + + F N +IP+ L+A+++RS+++P Y E++GM+K TS++Q ++ RL
Sbjct: 622 QWAKKWEMQVNASKCGVMGI-GSQTNML------FTIQGGAVPQVEHYKYLGVMFNDKWNHRSVINNNSENSRRAMNGMYFFLGNKNIPIALRATLIRSVLIPIATYGGELFGMSKARTSKLQTVIDTASRL 746
BLAST of mRNA_H-paniculata_contig5176.12511.1 vs. uniprot
Match: A0A1J5WUS4_9MICR (Reverse transcriptase domain-containing protein n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WUS4_9MICR) HSP 1 Score: 63.5 bits (153), Expect = 4.890e-9 Identity = 39/131 (29.77%), Postives = 67/131 (51.15%), Query Frame = 1
Query: 16 WVQANEMQIGIEKDGVMAIKGFRTERLRREAQKCQLGGEQLPIVEENRYLGIKFTRNLKVSTMMVGRLDGGKKLVGKITPFSRNTSIPVPLKASVVRSIVVPQMLYEAEIYGMNKKITSRMQKYLNQTCRL 408
W + EM+I +K GV+ G ER+ +G +P V+ YLG++ +NL ++ R G++ V + R+ S+ + K +V+ IV+P MLY AE+YG + T MQ +N+ ++
Sbjct: 662 WARRWEMEINPKKCGVITFYGSEEERVG-----IHIGEGPIPEVKSYTYLGVELDQNLTRKAVVEKRRKKGEECVFMLEKQLRSPSLTIGHKTLLVKGIVIPTMLYGAEVYGSTGEATRGMQTVVNKALKM 787
BLAST of mRNA_H-paniculata_contig5176.12511.1 vs. uniprot
Match: A0A4Z0A355_9AGAM (Reverse transcriptase domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Z0A355_9AGAM) HSP 1 Score: 63.5 bits (153), Expect = 4.960e-9 Identity = 39/142 (27.46%), Postives = 71/142 (50.00%), Query Frame = 1
Query: 7 LHKWVQANEMQIGIEKDGVMAIKGFRTERLRREAQKCQLGGEQLPIVEENRYLGIKFTRNL--------KVSTMMVGRLDGGKKLVGKITPFSRNTSIPVPLKASVVRSIVVPQMLYEAEIYGMNKKITSRMQKYLNQTCRL 408
++ W Q M++G+ K GVM E AQ LPIV+ +YLGI+ L ++ + + G K++ + P R+ + P+P+KAS++R++++P M Y +E G K + +Q+ +N+ +L
Sbjct: 698 IYDWGQKWGMELGLPKCGVMLFSTSDEEHQHHNAQTYSCADGDLPIVQMYKYLGIEMEPTLPNDRNADGNEASFVKRQAAKGDKVLNTLRPLLRDPTWPLPVKASIIRTLLMPIMTYGSEWVGYKKLNAAPIQRVVNKALKL 839
BLAST of mRNA_H-paniculata_contig5176.12511.1 vs. uniprot
Match: A0A1R1XUN4_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1XUN4_9FUNG) HSP 1 Score: 59.3 bits (142), Expect = 5.350e-8 Identity = 33/132 (25.00%), Postives = 67/132 (50.76%), Query Frame = 1
Query: 13 KWVQANEMQIGIEKDGVMAIKGFRTERLRREAQKCQLGGEQLPIVEENRYLGIKFTRNLKVSTMMVGRLDGGKKLVGKITPFSRNTSIPVPLKASVVRSIVVPQMLYEAEIYGMNKKITSRMQKYLNQTCRL 408
+W + EMQ+ K GV+ I G T+ + + +P V+E +YLG+ F + + + + + + F N P+ ++A+++RS+++P Y EI+GM++ +++QK ++ RL
Sbjct: 54 EWAEKWEMQVNASKCGVIGI-GQSTKMI------FMMQNGIVPQVKEYKYLGVMFNDKWNHVSAIKNNAEAASRAISGMYYFLENNKTPIAIRATLIRSVIIPIATYGGEIFGMSQSRINKLQKIVDLASRL 178
BLAST of mRNA_H-paniculata_contig5176.12511.1 vs. uniprot
Match: A0A1J5WU32_9MICR (Reverse transcriptase domain-containing protein n=2 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WU32_9MICR) HSP 1 Score: 60.1 bits (144), Expect = 7.450e-8 Identity = 41/131 (31.30%), Postives = 65/131 (49.62%), Query Frame = 1
Query: 16 WVQANEMQIGIEKDGVMAIKGFRTERLRREAQKCQLGGEQLPIVEENRYLGIKFTRNLKVSTMMVGRLDGGKKLVGKITPFSRNTSIPVPLKASVVRSIVVPQMLYEAEIYGMNKKITSRMQKYLNQTCRL 408
W EM+I +K GVM G + E++ + G +P + YLG++ RNL TM R G + + + R+ S+ + K +V+ I++P MLY AE+YG K TS Q +N+ R+
Sbjct: 232 WAGRWEMEINPKKCGVMVFGGDQGEKVGVTTR-----GGTIPEPDSYTYLGVELDRNLSRKTMSERRRKKGLECLFMLEKNLRSPSLSIGHKTLLVKGILMPTMLYGAEVYGSIGKTTSGAQVVVNKALRM 357
BLAST of mRNA_H-paniculata_contig5176.12511.1 vs. uniprot
Match: A0A1R1XKG1_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1XKG1_9FUNG) HSP 1 Score: 59.3 bits (142), Expect = 1.500e-7 Identity = 33/132 (25.00%), Postives = 67/132 (50.76%), Query Frame = 1
Query: 13 KWVQANEMQIGIEKDGVMAIKGFRTERLRREAQKCQLGGEQLPIVEENRYLGIKFTRNLKVSTMMVGRLDGGKKLVGKITPFSRNTSIPVPLKASVVRSIVVPQMLYEAEIYGMNKKITSRMQKYLNQTCRL 408
+W + EMQ+ K GV+ I G T+ + + +P V+E +YLG+ F + + + + + + F N P+ ++A+++RS+++P Y EI+GM++ +++QK ++ RL
Sbjct: 1170 EWAEKWEMQVNASKCGVIGI-GQSTKMI------FMMQNGIVPQVKEYKYLGVMFNDKWNHVSAIKNNAEAASRAISGMYYFLENNKTPIAIRATLIRSVIIPIATYGGEIFGMSQSRINKLQKVVDLASRL 1294
BLAST of mRNA_H-paniculata_contig5176.12511.1 vs. uniprot
Match: A0A0F9ZBM3_9MICR (Endonuclease-reverse transcriptase n=2 Tax=Nosema ceranae TaxID=40302 RepID=A0A0F9ZBM3_9MICR) HSP 1 Score: 57.8 bits (138), Expect = 5.010e-7 Identity = 41/151 (27.15%), Postives = 72/151 (47.68%), Query Frame = 1
Query: 7 LHKWVQANEMQIGIEKDGVMAI-----------------KGFRTERLRREAQKCQLGGEQLPIVEENRYLGIKFTRNLKVSTMMVGRLDGGKKLVGKITPFSRNTSIPVPLKASVVRSIVVPQMLYEAEIYGMNKKITSRMQKYLNQTCRL 408
L W + +EM + K G+M I K R E+ +E + ++ G +P V E YLGI+FT +L +++MM G+K +G + +PV +K ++ + + Y AE++GM+ +Q+ +N+ CRL
Sbjct: 518 LTSWSEKHEMSVNASKCGIMKIRATEDVIAGGPNFLQPNKKARVEQ--QEPEPFEIMGNVVPEVSEYIYLGIRFTPDLCLNSMMQHVESKGRKAIGAMYYLLSKKDMPVYVKILSIKVKLQSILTYGAEVWGMSTLRCKGIQRIMNEACRL 666
BLAST of mRNA_H-paniculata_contig5176.12511.1 vs. uniprot
Match: A0A1J5WDW1_9MICR (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WDW1_9MICR) HSP 1 Score: 55.5 bits (132), Expect = 1.370e-6 Identity = 38/119 (31.93%), Postives = 58/119 (48.74%), Query Frame = 1
Query: 16 WVQANEMQIGIEKDGVMAIKGFRTERLRREAQKCQLGGEQLPIVEENRYLGIKFTRNLKVSTMMVGRLDGGKKLVGKITPFSRNTSIPVPLKASVVRSIVVPQMLYEAEIYGMNKKITS 372
W EM+I +K GVM G + E++ + G P + YLG++ RNL TM R G + + + R+ S+ + K +V+ I++P MLY AE+YG K TS
Sbjct: 97 WAGRWEMEINPKKFGVMVFGGDQGEKVGVTTR-----GGTFPEPDSYTYLGVELDRNLSRKTMSERRRKKGLECLLMLEKNLRSPSLSIGHKTLLVKEILMPTMLYGAEVYGSIGKTTS 210 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5176.12511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5176.12511.1 >prot_H-paniculata_contig5176.12511.1 ID=prot_H-paniculata_contig5176.12511.1|Name=mRNA_H-paniculata_contig5176.12511.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp NHLHKWVQANEMQIGIEKDGVMAIKGFRTERLRREAQKCQLGGEQLPIVEback to top mRNA from alignment at H-paniculata_contig5176:1228..1638+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5176.12511.1 ID=mRNA_H-paniculata_contig5176.12511.1|Name=mRNA_H-paniculata_contig5176.12511.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=411bp|location=Sequence derived from alignment at H-paniculata_contig5176:1228..1638+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5176:1228..1638+ >mRNA_H-paniculata_contig5176.12511.1 ID=mRNA_H-paniculata_contig5176.12511.1|Name=mRNA_H-paniculata_contig5176.12511.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig5176:1228..1638+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |