mRNA_H-paniculata_contig5174.12508.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5174.12508.1
Unique NamemRNA_H-paniculata_contig5174.12508.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5174.12508.1 vs. uniprot
Match: A0A6H5JAB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAB6_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 3.010e-12
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:   10 TKRTYSQVTTSAQHTLQLENYGSEFSGAILYATFSVNSFLYQSVEEVDPVDAWALAGSAGGM 195
            T+R Y+QVTT+ Q +LQL+N    FSGAIL+ATFS+N F +Q+VEE DP    ++ G+AGGM
Sbjct:   50 TERGYTQVTTTGQQSLQLDN-ADPFSGAILFATFSINEFSFQTVEEYDPSHYPSMVGAAGGM 110
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BLAST of mRNA_H-paniculata_contig5174.12508.1 vs. uniprot
Match: D8LIE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIE9_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.200e-8
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   31 VTTSAQHTLQLENYGSEFSGAILYATFSVNSFLYQSVEEVDPVDAWALAGSAGGM 195
            VTT+ Q +LQ +N    FSGAIL+ATFS+N F +Q+VEE+D  D  ++ G+AGGM
Sbjct:  179 VTTTGQQSLQFDN-ADPFSGAILFATFSINEFSFQTVEELDTSDYVSMVGAAGGM 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5174.12508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JAB6_9PHAE3.010e-1256.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIE9_ECTSI1.200e-854.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5174contigH-paniculata_contig5174:12296..12639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930511.0192144-CDS-H-paniculata_contig5174:12295..123251622930511.0192144-CDS-H-paniculata_contig5174:12295..12325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5174 12296..12325 +
1691481325.2469451-CDS-H-paniculata_contig5174:12295..123251691481325.2469451-CDS-H-paniculata_contig5174:12295..12325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5174 12296..12325 +
1622930511.0387485-CDS-H-paniculata_contig5174:12474..126391622930511.0387485-CDS-H-paniculata_contig5174:12474..12639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5174 12475..12639 +
1691481325.2556474-CDS-H-paniculata_contig5174:12474..126391691481325.2556474-CDS-H-paniculata_contig5174:12474..12639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5174 12475..12639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5174.12508.1prot_H-paniculata_contig5174.12508.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5174 12296..12639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5174.12508.1

>prot_H-paniculata_contig5174.12508.1 ID=prot_H-paniculata_contig5174.12508.1|Name=mRNA_H-paniculata_contig5174.12508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
VGSTKRTYSQVTTSAQHTLQLENYGSEFSGAILYATFSVNSFLYQSVEEV
DPVDAWALAGSAGGM
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mRNA from alignment at H-paniculata_contig5174:12296..12639+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5174.12508.1 ID=mRNA_H-paniculata_contig5174.12508.1|Name=mRNA_H-paniculata_contig5174.12508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=344bp|location=Sequence derived from alignment at H-paniculata_contig5174:12296..12639+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGGATCTACAAAACGCACGTATAGCCAGGTACGGTGCGCGAATATATC
TGCTCTTGAACTATCATACCACGTCGAGATATAGACGCACTACCTCTGTA
AACTACAGTAACTTCCCCACAAGTTTATTCACCGTTACTCTGACGCCAGC
AAGCAGTTCATCCGCTCCGTGCTTCGTAGGTGACCACGAGTGCGCAGCAC
ACCTTACAATTGGAAAATTATGGTTCCGAATTCTCTGGGGCGATACTGTA
CGCCACCTTCAGCGTTAACAGCTTTCTGTATCAATCTGTGGAAGAGGTGG
ACCCGGTAGACGCTTGGGCTTTAGCAGGATCGGCTGGCGGAATG
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Coding sequence (CDS) from alignment at H-paniculata_contig5174:12296..12639+

>mRNA_H-paniculata_contig5174.12508.1 ID=mRNA_H-paniculata_contig5174.12508.1|Name=mRNA_H-paniculata_contig5174.12508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig5174:12296..12639+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGGATCTACAAAACGCACGTATAGCCAGGTGGGATCTACAAAACGCAC
GTATAGCCAGGTGACCACGAGTGCGCAGCACACCTTACAATTGGAAAATT
ATGGTTCCGAATTCTCTGGGGCGATACTGTACGCCACCTTCAGCGTTAAC
AGCTTTCTGTATCAATCTGTGGAAGAGGTGGACCCGGTAGACGCTTGGGC
TTTAGCAGGATCGGCTGGCGGAATGGTGACCACGAGTGCGCAGCACACCT
TACAATTGGAAAATTATGGTTCCGAATTCTCTGGGGCGATACTGTACGCC
ACCTTCAGCGTTAACAGCTTTCTGTATCAATCTGTGGAAGAGGTGGACCC
GGTAGACGCTTGGGCTTTAGCAGGATCGGCTGGCGGAATG
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