mRNA_H-paniculata_contig5173.12506.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5173.12506.1
Unique NamemRNA_H-paniculata_contig5173.12506.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5173.12506.1 vs. uniprot
Match: A0A830HAK9_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HAK9_9CHLO)

HSP 1 Score: 52.4 bits (124), Expect = 3.800e-6
Identity = 28/65 (43.08%), Postives = 35/65 (53.85%), Query Frame = 3 
Query:    9 CIFEQTSRVGGRMRSVRGDELPQELRALGSQAIDVAAYRAWPVLHPFGTAVWAE-LGVQTGCYSD 200
            C+FE TSRVGGR+ S+RG      L   G  ++D   YR WP   P   A+  E LG+   CY D
Sbjct:  117 CVFEATSRVGGRLYSLRG------LGKNGDLSVDAGGYRTWPRFTPVTHALITEVLGLGVECYED 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5173.12506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A830HAK9_9CHLO3.800e-643.08Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5173contigH-paniculata_contig5173:3692..5671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size217
Cds size210
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5173.12506.1prot_H-paniculata_contig5173.12506.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5173 3692..5664 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930510.8342252-CDS-H-paniculata_contig5173:3691..38721622930510.8342252-CDS-H-paniculata_contig5173:3691..3872Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5173 3692..3872 -
1691481325.174943-CDS-H-paniculata_contig5173:3691..38721691481325.174943-CDS-H-paniculata_contig5173:3691..3872Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5173 3692..3872 -
1622930510.8541465-CDS-H-paniculata_contig5173:5635..56641622930510.8541465-CDS-H-paniculata_contig5173:5635..5664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5173 5636..5664 -
1691481325.1839948-CDS-H-paniculata_contig5173:5635..56641691481325.1839948-CDS-H-paniculata_contig5173:5635..5664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5173 5636..5664 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930510.8719103-UTR-H-paniculata_contig5173:5664..56711622930510.8719103-UTR-H-paniculata_contig5173:5664..5671Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5173 5665..5671 -
1691481325.192109-UTR-H-paniculata_contig5173:5664..56711691481325.192109-UTR-H-paniculata_contig5173:5664..5671Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5173 5665..5671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5173.12506.1

>prot_H-paniculata_contig5173.12506.1 ID=prot_H-paniculata_contig5173.12506.1|Name=mRNA_H-paniculata_contig5173.12506.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MHLRANESCWWQDAFCARGRAPPRTEGVRLPGDRCSGVPCLACTPSIRHS
RVGRARCADRVLLRHCVPHR
back to top

mRNA from alignment at H-paniculata_contig5173:3692..5671-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5173.12506.1 ID=mRNA_H-paniculata_contig5173.12506.1|Name=mRNA_H-paniculata_contig5173.12506.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1980bp|location=Sequence derived from alignment at H-paniculata_contig5173:3692..5671- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAAAACATGCATCTTCGAGCAAACGAGTCGTGTTGGTGAGTGCGGTATG
TGTAACAAAAATGCATCTGGTACCAAAAAATGGCGAGTGCTGCATTTATT
TTCGATGTATAGTCCTATATTTTTCCGAGCGTGGTGGGGTCGTCTGCCCC
ACTAGCGGCGGTACTCTATCTCGGCAATCATGTCGTAAGAAGTGTTCTTT
CCTGCTGTAGAGCCAGAAACTGATCGGGAATTATTCAGGACCTCTTTTCA
CCATGAAGGTTTTTCTAGAGAATCTCTACTTTCCAAAGTGGGCTTCGGCG
GTGCAGAACTCGCCGAACTTTTGGTCCAGAATGAAGGAGTTGATGGAAAT
TGGTTGCATATGTATGTGTGTAGAGGACACTGCCATAGGTCCGCGTGCTA
CAGCTTCGGAAGTATTCTAGCCACTCTTGGTAGTACCAATGGCCAAAAGT
GTCCAAAGTGGTGAGAATGGCAATCTTGCAGGTCGCTCGGGAGCTGTAAG
ACATGGGCGTATAATAGTAGTATCCTTTACACAAACATAAGAACAATTTC
CTACCAACTTCTATTGTTCTGGACCAAAGCTCGACGAGTTTTGTCGTACC
AAAGCCAACTTTGGGAAAAACATGTCCCTCAAAACTACCTGATAAGAGGT
GGATATGTCGGCATACTAGTCGTCCTGTTGCTTTTCCTATTGGTTTCGCG
ATCTGAGAGGTGAATCGCGGGTTTAACCGTCGCCCTGATGAAAATCGTCG
GGGAACATGCATGATCTATTCATATATACCTTACAATACTTTCACTATCC
AAATGATTTTCTGGGGTTTTTTCGTCTCTGGGACCTGTTCGCAAGTTGTA
TTGATTTTTTTCGCTTGTATCTTTTTGAAGTGCAAAACTGACCCCTCGCG
GAAAAGTGATAGCAAAAGAGTCCCACCCAAGGAGTGGTCTTACGACATGA
ACCTCAGGGCGTTATCGAGAAAATGGTGAGGGCGAAAGGAAGGAAGGGGA
AAAGAGAACAAAAGGAAACAGATACCGACGTTCAGGACGACCCTTACAGA
TGCTCGAAAATGAGATGCGGAACAGTTCAGCTGTCAGTATATGTCGTGTC
ATACTTCTTCCGGTTTGTCAGTGAAAAAGAAAATCCGGCTCTACTTGTGT
CACCGCATTGGACACCAGCATGACTGGGCGTCGAATGCCAAAAACTTGGA
CTTATGTACCAAGCTTTTCACCGTGTTGCCTAGGGCACCCCTACCGTCTG
GCAATTAATTTGTTGTATAGAAACACGCACGGTACATGCTTGCTACACAA
CAGATGCTAGTCAGTACAAAAAACTCACACAAAGGTTGTGTACTGCCCTG
CCTACCCCCCTTGTGCGTCGATTTGTTTTATCGTATCGGCCTCTGTAGTA
GCATCTAGATCCTGGAGCCAGGTTTTAAAGAGCTCTGGTACATGAACTAT
GGATGGAAATGACCATGGACTTCTTCGACGACTGCAGTAAACACTTGTGC
ACGGTGTGATAGTACACATCGATTATGCATATACTTCGCAAAACGAAGAG
GAAATATTTCAAATAATCTCATGGAAATGAATGTAATCAATTTCAATTTT
GCTTGTACAACTTCACTACACCAGAGCTTTTGGGCTTAACAGCTTTTTAG
GGGTGGAGGTGTACGTCTCGGTGACGTCTTCTAAAGACCGAAGTTGATTC
TCATCATTCGTATCGTTTTTTCGTTAGCAAGCCTGCAGCACTACTGTATA
CATTTATGATCGCCGCGATGCCATTCGCTTGCTTCCTCGCGTGCCAAAGG
TGGCAGGATGCGTTCTGTGCGCGGGGACGAGCTCCCCCAAGAACTGAGGG
CGTTAGGCTCCCAGGCGATCGATGTAGCGGCGTACCGTGCTTGGCCTGTA
CTCCATCCATTCGGCACAGCCGTGTGGGCCGAGCTCGGTGTGCAGACCGG
GTGCTACTCCGACATTGCGTTCCGCACCGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5173:3692..5671-

>mRNA_H-paniculata_contig5173.12506.1 ID=mRNA_H-paniculata_contig5173.12506.1|Name=mRNA_H-paniculata_contig5173.12506.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig5173:3692..5671- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATCTTCGAGCAAACGAGTCGTGTTGATGCATCTTCGAGCAAACGAG
TCGTGTTGGTGGCAGGATGCGTTCTGTGCGCGGGGACGAGCTCCCCCAAG
AACTGAGGGCGTTAGGCTCCCAGGCGATCGATGTAGCGGCGTACCGTGCT
TGGCCTGTACTCCATCCATTCGGCACAGCCGTGTGGGCCGAGCTCGGTGT
GCAGACCGGGTGCTACTCCGACATTGCGTTCCGCACCGGGTGGCAGGATG
CGTTCTGTGCGCGGGGACGAGCTCCCCCAAGAACTGAGGGCGTTAGGCTC
CCAGGCGATCGATGTAGCGGCGTACCGTGCTTGGCCTGTACTCCATCCAT
TCGGCACAGCCGTGTGGGCCGAGCTCGGTGTGCAGACCGGGTGCTACTCC
GACATTGCGTTCCGCACCGG
back to top