mRNA_H-paniculata_contig517.12499.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig517.12499.1
Unique NamemRNA_H-paniculata_contig517.12499.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig517.12499.1 vs. uniprot
Match: D8LS26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS26_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 9.410e-27
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 QLHVHYSNRSAAYLKKNNASAALLDADRCVEMNPSWAKGYSRQGTALFRLGRHAAAADAYSKG 189
            QLHVHYSNRSAA+LK+N A+ AL+DA+RCVE+NPSWAKGYSR GTALFRLGRH  AA AYSKG
Sbjct:  104 QLHVHYSNRSAAFLKQNKATEALMDAERCVEVNPSWAKGYSRMGTALFRLGRHDKAAAAYSKG 166
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BLAST of mRNA_H-paniculata_contig517.12499.1 vs. uniprot
Match: A0A7E5VWU5_TRINI (Stress-induced-phosphoprotein 1 n=1 Tax=Trichoplusia ni TaxID=7111 RepID=A0A7E5VWU5_TRINI)

HSP 1 Score: 82.0 bits (201), Expect = 1.400e-16
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    1 QLHVHYSNRSAAYLKKNNASAALLDADRCVEMNPSWAKGYSRQGTALFRLGRHAAAADAYSKG 189
            Q HV YSNRSAAY K  N +AAL DAD+ + +NP+W+KGYSR+G+AL  LGRH  A  AY KG
Sbjct:   36 QNHVLYSNRSAAYAKDENYTAALADADQTITLNPTWSKGYSRKGSALAYLGRHEEAIAAYEKG 98
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BLAST of mRNA_H-paniculata_contig517.12499.1 vs. uniprot
Match: A0A7S1G9V5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G9V5_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.330e-15
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    7 HVHYSNRSAAYLKKNNASAALLDADRCVEMNPSWAKGYSRQGTALFRLGRHAAAADAYSKG 189
            HV YSNRSAAYL   +A  AL DAD+C+E+NPS+AKGY R+G AL +LGR   + +AY  G
Sbjct:   39 HVFYSNRSAAYLSMGDAEKALADADKCIEVNPSFAKGYGRKGAALHKLGRPQDSVEAYEAG 99
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BLAST of mRNA_H-paniculata_contig517.12499.1 vs. uniprot
Match: A0A484E4I5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E4I5_BRELC)

HSP 1 Score: 77.8 bits (190), Expect = 3.860e-15
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    7 HVHYSNRSAAYLKKNNASAALLDADRCVEMNPSWAKGYSRQGTALFRLGRHAAAADAYSKG 189
            HV YSNRSAA LK N A+ AL DAD+C+ + P+W KGYSR+G AL+ LGR+  A  AY  G
Sbjct:   47 HVFYSNRSAAQLKLNKANEALNDADQCIALQPTWTKGYSRRGAALYALGRYTDAYRAYKDG 107
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BLAST of mRNA_H-paniculata_contig517.12499.1 vs. uniprot
Match: A0A482SK70_9ARCH (Tetratricopeptide repeat protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SK70_9ARCH)

HSP 1 Score: 77.4 bits (189), Expect = 4.090e-15
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    7 HVHYSNRSAAYLKKNNASAALLDADRCVEMNPSWAKGYSRQGTALFRLGRHAAAADAYSK 186
            HV YSNRSAAY+KK++ S AL DAD+CVE+ P WAKGY+R G A   LGR+ AA  ++ K
Sbjct:   49 HVFYSNRSAAYMKKDSISKALYDADKCVELAPDWAKGYNRLGVAQQSLGRYEAAIASFKK 108
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BLAST of mRNA_H-paniculata_contig517.12499.1 vs. uniprot
Match: A0A6J1NPY8_BICAN (Stress-induced-phosphoprotein 1 n=1 Tax=Bicyclus anynana TaxID=110368 RepID=A0A6J1NPY8_BICAN)

HSP 1 Score: 77.8 bits (190), Expect = 4.330e-15
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    7 HVHYSNRSAAYLKKNNASAALLDADRCVEMNPSWAKGYSRQGTALFRLGRHAAAADAYSKG 189
            HV YSNRSAAY K  N SAAL DA++ V +NP W+KGYSR+G+AL  LG+H  +  AY KG
Sbjct:   38 HVLYSNRSAAYAKAENYSAALEDANKTVSLNPKWSKGYSRKGSALAYLGKHEESIAAYEKG 98
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BLAST of mRNA_H-paniculata_contig517.12499.1 vs. uniprot
Match: H3GEV8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GEV8_PHYRM)

HSP 1 Score: 77.4 bits (189), Expect = 5.270e-15
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    7 HVHYSNRSAAYLKKNNASAALLDADRCVEMNPSWAKGYSRQGTALFRLGRHAAAADAYSKG 189
            HV YSNRSAA LK   A  AL DAD+CV   PSW KGYSR+G+AL+ LGR+A A  AY  G
Sbjct:   40 HVFYSNRSAAQLKLRKADEALKDADQCVARQPSWPKGYSRRGSALYALGRYADAYRAYQDG 100
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BLAST of mRNA_H-paniculata_contig517.12499.1 vs. uniprot
Match: A0A0P1B717_PLAHL (Stress-inducible protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B717_PLAHL)

HSP 1 Score: 77.0 bits (188), Expect = 7.200e-15
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    4 LHVHYSNRSAAYLKKNNASAALLDADRCVEMNPSWAKGYSRQGTALFRLGRHAAAADAYSKG 189
            +HV YSNRSAA LK + A  AL DAD+C+ + P W KGYSR+G AL+ LGR+A A  AY  G
Sbjct:   39 VHVFYSNRSAALLKLDKADKALEDADKCITIKPKWPKGYSRRGAALYALGRYADAYRAYKDG 100
[Close]
BLAST of mRNA_H-paniculata_contig517.12499.1 vs. uniprot
Match: A0A482S679_9ARCH (Tetratricopeptide repeat protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S679_9ARCH)

HSP 1 Score: 74.3 bits (181), Expect = 1.010e-14
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    7 HVHYSNRSAAYLKKNNASAALLDADRCVEMNPSWAKGYSRQGTALFRLGRHAAAADAYSKG 189
            HV +SNRSAAYL K  A +AL D +RC+ +NP+W KGYSR+G AL  L R+  A + Y  G
Sbjct:   37 HVFFSNRSAAYLSKGEAGSALSDGERCITLNPTWPKGYSRKGAALHALRRYDEAIETYKHG 97
[Close]
BLAST of mRNA_H-paniculata_contig517.12499.1 vs. uniprot
Match: A0A7S2BEE1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BEE1_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.520e-14
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    7 HVHYSNRSAAYLKKNNASAALLDADRCVEMNPSWAKGYSRQGTALFRLGRHAAAADAYSKG 189
            HV YSNRSAAYL K +A AA+ D D+C+ M P W KGY R+G AL +L ++  AA  YS G
Sbjct:   52 HVFYSNRSAAYLSKGDADAAMADGDKCITMKPDWPKGYGRKGAALHKLKKYDEAAAVYSAG 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig517.12499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS26_ECTSI9.410e-2780.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7E5VWU5_TRINI1.400e-1661.90Stress-induced-phosphoprotein 1 n=1 Tax=Trichoplus... [more]
A0A7S1G9V5_9STRA2.330e-1559.02Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A484E4I5_BRELC3.860e-1559.02Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A482SK70_9ARCH4.090e-1560.00Tetratricopeptide repeat protein n=1 Tax=archaeon ... [more]
A0A6J1NPY8_BICAN4.330e-1560.66Stress-induced-phosphoprotein 1 n=1 Tax=Bicyclus a... [more]
H3GEV8_PHYRM5.270e-1562.30Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A0P1B717_PLAHL7.200e-1558.06Stress-inducible protein n=1 Tax=Plasmopara halste... [more]
A0A482S679_9ARCH1.010e-1454.10Tetratricopeptide repeat protein n=1 Tax=archaeon ... [more]
A0A7S2BEE1_9STRA1.520e-1455.74Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig517contigH-paniculata_contig517:228..1195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue9.4e-22
Seed eggNOG ortholog2880.D8LS26
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of catalytic activity in other organism involved in symbiotic interaction
EggNOG OGsCOG0457@1,KOG0548@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930509.8068576-CDS-H-paniculata_contig517:227..3991622930509.8068576-CDS-H-paniculata_contig517:227..399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig517 228..399 -
1691481324.712872-CDS-H-paniculata_contig517:227..3991691481324.712872-CDS-H-paniculata_contig517:227..399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig517 228..399 -
1622930509.8217769-CDS-H-paniculata_contig517:1151..11951622930509.8217769-CDS-H-paniculata_contig517:1151..1195Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig517 1152..1195 -
1691481324.7252245-CDS-H-paniculata_contig517:1151..11951691481324.7252245-CDS-H-paniculata_contig517:1151..1195Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig517 1152..1195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig517.12499.1prot_H-paniculata_contig517.12499.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig517 228..1195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig517.12499.1

>prot_H-paniculata_contig517.12499.1 ID=prot_H-paniculata_contig517.12499.1|Name=mRNA_H-paniculata_contig517.12499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
QLHVHYSNRSAAYLKKNNASAALLDADRCVEMNPSWAKGYSRQGTALFRL
GRHAAAADAYSKGELRLCCSV*
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mRNA from alignment at H-paniculata_contig517:228..1195-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig517.12499.1 ID=mRNA_H-paniculata_contig517.12499.1|Name=mRNA_H-paniculata_contig517.12499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=968bp|location=Sequence derived from alignment at H-paniculata_contig517:228..1195- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTTCACGTACACTACAGCAACCGCTCCGCAGCTTACCTCAAGTGAGA
ATTGAGCTCCGGTCCAAAACACAATGGTGGAGCAGGATGAGCGGCGGTCT
TTCAGGGCCCCGGGGGCAGGGGGAGCGGGGGGCGTACTCATGTTTTACCT
TTAGTAAGACAAAATTAGAACATGACAATACCAATGACTAAGGGTATATG
CACAGGTGTACCCCCTGTTCTGTTCTAGTTTTGCTGATGAATGCATTCCC
AACAGCCATGGTTGATGAGTATGGACTACAAGAACCTCAGCATGAGTGAA
ATGTTTGCTTGATATCGTGATGGGTAAATACAGGGGGTTAGTTGGTCCCC
GTAGTTTGGTCAGTTTTTAGACGAGTAATCCAGCAGCTTGAAAATGCTAA
CATCACCTCCATATTGTCTCACGGTCCTTGTCATATTCTCCACAAAAAAA
TTAAATGTATATCTGCCTCCATCTGACTCGTTCTTTATACTCTGTCAGCC
TCTTATTGATTGTATGATTTTGCTGGTAAGTTCACTCAGCTGAAATAAGA
CGCCAAGTGCACAGCAAACTCAACATGGGCACGATAATGATGTTACTTCA
CGAGCGTTGTAGTTCTACCAACTGTGGGACGTAGGTTGACTCTCTTGGTT
AACCCCTTCCCCCCCTCCGTGTCCGTTGGAAAGTGCTCTCATAGGAGCAA
AGCTCCGTCCTCCCAAGGGCGCGTGGTCAATGATTTCACAACAACAGCAT
GCAAACATGAGTACCCTCTCCTCCGCACCCTCCGCCCCTATCCCAGGAAA
AATAATGCAAGCGCAGCCCTATTAGATGCGGATAGATGCGTGGAGATGAA
TCCTTCTTGGGCCAAGGGGTACTCGCGCCAGGGCACCGCGCTATTCCGCC
TGGGTAGGCACGCAGCAGCTGCCGATGCCTACTCCAAGGGTGAGTTAAGG
TTGTGTTGTTCTGTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig517:228..1195-

>mRNA_H-paniculata_contig517.12499.1 ID=mRNA_H-paniculata_contig517.12499.1|Name=mRNA_H-paniculata_contig517.12499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig517:228..1195- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTTCACGTACACTACAGCAACCGCTCCGCAGCTTACCTCAACAGCTT
CACGTACACTACAGCAACCGCTCCGCAGCTTACCTCAAGAAAAATAATGC
AAGCGCAGCCCTATTAGATGCGGATAGATGCGTGGAGATGAATCCTTCTT
GGGCCAAGGGGTACTCGCGCCAGGGCACCGCGCTATTCCGCCTGGGTAGG
CACGCAGCAGCTGCCGATGCCTACTCCAAGGGTGAGTTAAGGTTGTGTTG
TTCTGTGTGAGAAAAATAATGCAAGCGCAGCCCTATTAGATGCGGATAGA
TGCGTGGAGATGAATCCTTCTTGGGCCAAGGGGTACTCGCGCCAGGGCAC
CGCGCTATTCCGCCTGGGTAGGCACGCAGCAGCTGCCGATGCCTACTCCA
AGGGTGAGTTAAGGTTGTGTTGTTCTGTGTGA
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