mRNA_H-paniculata_contig51659.12496.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig51659.12496.1
Unique Name	mRNA_H-paniculata_contig51659.12496.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig51659.12496.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.370e-26
Identity = 51/108 (47.22%), Postives = 71/108 (65.74%), Query Frame = 1

Query:    1 LWHQRMGHLNHKSLKLLQKVDDNGVSFGGTVPDCDICAVGKSYQLAHPKTADHKVQHAFQLVFTDLMGYFTPEALGGYKYACKISDEYTKRTEIYLLKTRDVALHAFQ 324
            LWH+R+GH++ +SL +L+KV  NGV + G +  CD+CAVG S Q  HPK A +     FQLV TDLMG F+P ALGG+ Y  K  D++ K  E++L+K +   + A Q
Sbjct:  268 LWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQ 375

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BLAST of mRNA_H-paniculata_contig51659.12496.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.190e-23
Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = 1

Query:    7 HQRMGHLNHKSLKLLQKVDDNGVSFGGTVPDCDICAVGKSYQLAHPKTADHKVQHAFQLVFTDLMGYFTPEALGGYKYACKISDEYTKRTEIYLLKTRDV---ALHAF 321
            H+R+GHLN +S+KLL+K ++N V F  ++  CDICA+ KS QLAHPK    +      LV+TD+MG  TP A GG+ Y    +D Y++  EIYLLK +     ALHA+
Sbjct:  110 HRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSRETTAPMLLVYTDIMGKTTPLAKGGFGYVSMFNDAYSRIKEIYLLKAKSETVRALHAY 217

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BLAST of mRNA_H-paniculata_contig51659.12496.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.200e-23
Identity = 52/109 (47.71%), Postives = 70/109 (64.22%), Query Frame = 1

Query:    4 WHQRMGHLNHKSLKLLQKVDDNGVSFGGTVPDCDICAVGKSYQLAHPKTADHKVQHAFQLVFTDLMGYFTPEALGGYKYACKISDEYTKRTEIYLLKTRDV---ALHAF 321
            WH+ + HLN +S++LL+K +DNGV F  ++  CDICA+ KS QLAHP+  + +     QLV+TD MG  TP A GG+ Y  K +D Y+   EIYLLK       ALHA+
Sbjct:  311 WHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETVRALHAY 419

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BLAST of mRNA_H-paniculata_contig51659.12496.1 vs. uniprot
Match: A0A6H5KP59_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP59_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 5.930e-20
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 1

Query:    4 WHQRMGHLNHKSLKLLQKVDDNGVSFGGTVPDCDICAVGKSYQLAHPKTADHKVQHAFQLVFTDLMGYFTPEAL---GGYKYACKISDEYTKRTEIYLLKTR 300
            WH+R+GHLN +SL++L+K    GV +  ++  C +C +GK  Q  HPK +  ++    QLV  D MG   P A    G + YACKI+D+YTK  E+YLL+ +
Sbjct:  309 WHRRLGHLNARSLEILRKDTGTGVDYRDSLSPCGVCQIGKHKQSPHPKQSTRELSRPGQLVVIDSMGPVNPPAYYKGGSFPYACKITDDYTKMKEVYLLRNK 410

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BLAST of mRNA_H-paniculata_contig51659.12496.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.340e-19
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 1

Query:    4 WHQRMGHLNHKSLKLLQKVDDNGVSFGGTVPDCDICAVGKSYQLAHPKTADHKVQHAFQLVFTDLMGYFTPEAL---GGYKYACKISDEYTKRTEIYLLKTR 300
            WH+R+GHLN +SL +L+K    GV +  ++  C +C + K  Q  HPK +  ++    QLV  D MG   P A    G + YACKI+D+YTK  E+YLL+ +
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKK 146

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BLAST of mRNA_H-paniculata_contig51659.12496.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.590e-18
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 1

Query:    4 WHQRMGHLNHKSLKLLQKVDDNGVSFGGTVPDCDICAVGKSYQLAHPKTADHKVQHAFQLVFTDLMGYFTPEAL---GGYKYACKISDEYTKRTEIYLLKTR 300
            WH+R+GHLN +SL +L+K    GV +  ++  C +C + K  Q  HPK +  ++    QLV  D MG   P A    G + YACKI+D+YTK  E+YLL+ +
Sbjct:  421 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKK 522

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BLAST of mRNA_H-paniculata_contig51659.12496.1 vs. uniprot
Match: A0A6H5JSL6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL6_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.220e-18
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 1

Query:    4 WHQRMGHLNHKSLKLLQKVDDNGVSFGGTVPDCDICAVGKSYQLAHPKTADHKVQHAFQLVFTDLMGYFTPEAL---GGYKYACKISDEYTKRTEIYLLKTR 300
            WH+R+GHLN +SL +L+K    GV +  ++  C +C + K  Q  HPK +  ++  + QLV  D MG   P A    G + YACKI+D+YTK  E+YLL+ +
Sbjct:  241 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRSGQLVVIDNMGPANPPAKYQGGSFPYACKITDDYTKMKEVYLLRKK 342

[Close]

BLAST of mRNA_H-paniculata_contig51659.12496.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.860e-18
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 1

Query:    4 WHQRMGHLNHKSLKLLQKVDDNGVSFGGTVPDCDICAVGKSYQLAHPKTADHKVQHAFQLVFTDLMGYFTPEAL---GGYKYACKISDEYTKRTEIYLLKTR 300
            WH+R+GHLN +SL +L+K    GV +  ++  C +C + K  Q  HPK +  ++    QLV  D MG   P A    G + YACKI+D+YTK  E+YLL+ +
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKK 146

[Close]

BLAST of mRNA_H-paniculata_contig51659.12496.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.990e-18
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 1

Query:    4 WHQRMGHLNHKSLKLLQKVDDNGVSFGGTVPDCDICAVGKSYQLAHPKTADHKVQHAFQLVFTDLMGYFTPEAL---GGYKYACKISDEYTKRTEIYLLKTR 300
            WH+R+GHLN +SL +L+K    GV +  ++  C +C + K  Q  HPK +  ++    QLV  D MG   P A    G + YACKI+D+YTK  E+YLL+ +
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKK 146

[Close]

BLAST of mRNA_H-paniculata_contig51659.12496.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.010e-18
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 1

Query:    4 WHQRMGHLNHKSLKLLQKVDDNGVSFGGTVPDCDICAVGKSYQLAHPKTADHKVQHAFQLVFTDLMGYFTPEAL---GGYKYACKISDEYTKRTEIYLLKTR 300
            WH+R+GHLN +SL +L+K    GV +  ++  C +C + K  Q  HPK +  ++    QLV  D MG   P A    G + YACKI+D+YTK  E+YLL+ +
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKK 146

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig51659.12496.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig51659.12496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K1J1_9PHAE	1.370e-26	47.22	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JT61_9PHAE	1.190e-23	47.22	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JYD3_9PHAE	1.200e-23	47.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KP59_9PHAE	5.930e-20	42.16	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KZ34_9PHAE	2.340e-19	41.18	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5KT84_9PHAE	1.590e-18	41.18	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JSL6_9PHAE	2.220e-18	41.18	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KCM0_9PHAE	2.860e-18	41.18	Integrase catalytic domain-containing protein n=5 ...	[more]
A0A6H5K500_9PHAE	2.990e-18	41.18	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K1R7_9PHAE	3.010e-18	41.18	Integrase catalytic domain-containing protein (Fra...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig51659	contig	H-paniculata_contig51659:742..1065 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Viridiplantae
Seed ortholog score	65.1
Seed ortholog evalue	2.2e-08
Seed eggNOG ortholog	4081.Solyc02g062480.1.1
Hectar predicted targeting category	other localisation
EggNOG free text desc.	Mitochondrial protein
EggNOG OGs	37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.	L
Best tax level	asterids
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	324
Cds size	309
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930509.5895362-UTR-H-paniculata_contig51659:741..756	1622930509.5895362-UTR-H-paniculata_contig51659:741..756	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig51659 742..756 +
1691481324.6154602-UTR-H-paniculata_contig51659:741..756	1691481324.6154602-UTR-H-paniculata_contig51659:741..756	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig51659 742..756 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930509.603818-CDS-H-paniculata_contig51659:756..1065	1622930509.603818-CDS-H-paniculata_contig51659:756..1065	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig51659 757..1065 +
1691481324.6328013-CDS-H-paniculata_contig51659:756..1065	1691481324.6328013-CDS-H-paniculata_contig51659:756..1065	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig51659 757..1065 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig51659.12496.1	prot_H-paniculata_contig51659.12496.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig51659 757..1065 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig51659:742..1065+
coding sequence from alignment at H-paniculata_contig51659:742..1065+

protein sequence of mRNA_H-paniculata_contig51659.12496.1

>prot_H-paniculata_contig51659.12496.1 ID=prot_H-paniculata_contig51659.12496.1|Name=mRNA_H-paniculata_contig51659.12496.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MGHLNHKSLKLLQKVDDNGVSFGGTVPDCDICAVGKSYQLAHPKTADHKV
QHAFQLVFTDLMGYFTPEALGGYKYACKISDEYTKRTEIYLLKTRDVALH
AFQ

mRNA from alignment at H-paniculata_contig51659:742..1065+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig51659.12496.1 ID=mRNA_H-paniculata_contig51659.12496.1|Name=mRNA_H-paniculata_contig51659.12496.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=324bp|location=Sequence derived from alignment at H-paniculata_contig51659:742..1065+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTATGGCATCAGCGGATGGGCCACCTCAACCACAAGAGCCTGAAGCTCCT
GCAGAAAGTAGATGACAACGGGGTGAGCTTTGGCGGAACCGTACCAGACT
GCGACATTTGCGCCGTTGGTAAAAGTTACCAGCTGGCCCACCCTAAGACG
GCTGACCACAAGGTCCAGCACGCGTTCCAGCTGGTCTTCACAGACCTGAT
GGGCTACTTCACGCCGGAGGCGCTCGGAGGCTACAAGTACGCTTGCAAGA
TATCCGACGAGTACACCAAGCGGACGGAGATTTACCTTCTGAAGACCAGA
GACGTTGCTCTCCACGCGTTCCAG

Coding sequence (CDS) from alignment at H-paniculata_contig51659:742..1065+

>mRNA_H-paniculata_contig51659.12496.1 ID=mRNA_H-paniculata_contig51659.12496.1|Name=mRNA_H-paniculata_contig51659.12496.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig51659:742..1065+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCCACCTCAACCACAAGAGCCTGAAGCTCCTGCAGAAAGTAGATGA
CAACGGGGTGAGCTTTGGCGGAACCGTACCAGACTGCGACATTTGCGCCG
TTGGTAAAAGTTACCAGCTGGCCCACCCTAAGACGGCTGACCACAAGGTC
CAGCACGCGTTCCAGCTGGTCTTCACAGACCTGATGGGCTACTTCACGCC
GGAGGCGCTCGGAGGCTACAAGTACGCTTGCAAGATATCCGACGAGTACA
CCAAGCGGACGGAGATTTACCTTCTGAAGACCAGAGACGTTGCTCTCCAC
GCGTTCCAGATGGGCCACCTCAACCACAAGAGCCTGAAGCTCCTGCAGAA
AGTAGATGACAACGGGGTGAGCTTTGGCGGAACCGTACCAGACTGCGACA
TTTGCGCCGTTGGTAAAAGTTACCAGCTGGCCCACCCTAAGACGGCTGAC
CACAAGGTCCAGCACGCGTTCCAGCTGGTCTTCACAGACCTGATGGGCTA
CTTCACGCCGGAGGCGCTCGGAGGCTACAAGTACGCTTGCAAGATATCCG
ACGAGTACACCAAGCGGACGGAGATTTACCTTCTGAAGACCAGAGACGTT
GCTCTCCACGCGTTCCAG