mRNA_H-paniculata_contig51650.12495.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51650.12495.1
Unique NamemRNA_H-paniculata_contig51650.12495.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig51650.12495.1 vs. uniprot
Match: A0A0J7K416_LASNI (Lectin receptor kinase n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K416_LASNI)

HSP 1 Score: 71.2 bits (173), Expect = 9.320e-13
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 1
Query:   13 PVCFSDIKKLAHKTLWTEAVKAEFEGLENLKAWTYVDSVRDGSNVVSARWVFAWKIDEQGNVTKPKARLVARGFSQ 240
            PV + +  K      W EA+  E + +E    WT V ++  G   +SA+W+F  K+DE+GNV + KARLVARG+SQ
Sbjct:  174 PVSYEEAIKGPEGEKWKEAINEELDAMEKNSTWTVVKNLPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYSQ 249          
BLAST of mRNA_H-paniculata_contig51650.12495.1 vs. uniprot
Match: A0A0J7KM48_LASNI (Integrase catalytic domain-containing protein n=2 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KM48_LASNI)

HSP 1 Score: 71.2 bits (173), Expect = 1.220e-12
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 1
Query:   13 PVCFSDIKKLAHKTLWTEAVKAEFEGLENLKAWTYVDSVRDGSNVVSARWVFAWKIDEQGNVTKPKARLVARGFSQ 240
            PV + +  K      W EA+  E + +E    WT V ++  G   +SA+W+F  K+DE+GNV + KARLVARG+SQ
Sbjct:  549 PVSYEEAIKGPEGEKWKEAINEELDAMEKNSTWTVVKNLPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYSQ 624          
BLAST of mRNA_H-paniculata_contig51650.12495.1 vs. uniprot
Match: A0A5C3EBA0_9BASI (Related to Retrotransposon protein n=1 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3EBA0_9BASI)

HSP 1 Score: 66.6 bits (161), Expect = 5.270e-11
Identity = 33/80 (41.25%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    1 TEEPPVCFSDIKKLAHKTLWTEAVKAEFEGLENLKAWTYVDSVRDGSNVVSARWVFAWKIDEQGNVTKPKARLVARGFSQ 240
            ++E P   +  +   +   W EA+K E + L+N   WT VD +      ++A+WVF  K D  GNV+K KARLVARGF+Q
Sbjct:  859 SQEDPQMLAQARASPNWPKWEEAIKVELDSLDNTGTWTIVD-LPAARKAITAKWVFKTKQDADGNVSKYKARLVARGFTQ 937          
BLAST of mRNA_H-paniculata_contig51650.12495.1 vs. uniprot
Match: A0A2S2NPY8_SCHGA (Copia protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2NPY8_SCHGA)

HSP 1 Score: 65.9 bits (159), Expect = 9.540e-11
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 1
Query:   13 PVCFSDIKKLAHKTLWTEAVKAEFEGLENLKAWTYVDSVRDGSNVVSARWVFAWKIDEQGNVTKPKARLVARGFSQ 240
            P  + + +   +K  W  A+K+E E L   K WT V   ++  N++S +W+F  K D +G +TK KARLVARGFSQ
Sbjct:   63 PTTYDEAQSHPNKKEWNLAMKSEIESLYKNKTWTLVKKPQN-RNIISTKWIFKIKKDGEGQITKYKARLVARGFSQ 137          
BLAST of mRNA_H-paniculata_contig51650.12495.1 vs. uniprot
Match: UPI001E2759C6 (uncharacterized protein LOC123684598 n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E2759C6)

HSP 1 Score: 65.9 bits (159), Expect = 9.670e-11
Identity = 32/77 (41.56%), Postives = 47/77 (61.04%), Query Frame = 1
Query:    4 EEPPVCFSDIKKLAHKTLWTEAVKAEFEGLENLKAWTYVDSVRDGSNVVSARWVFAWKIDEQGNVTKPKARLVARGF 234
            E+ PV + +     +K  WTEAV++  + LE    W  V+   + + V+ ++WVF  K DE GN++K KARLVARGF
Sbjct:   12 EDDPVSYDEAMSSENKAKWTEAVESAIKALEENDTWI-VEKNPNNAEVIDSKWVFKGKKDEAGNISKFKARLVARGF 87          
BLAST of mRNA_H-paniculata_contig51650.12495.1 vs. uniprot
Match: A0A2P6P7L4_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P7L4_ROSCH)

HSP 1 Score: 63.2 bits (152), Expect = 8.500e-10
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   25 SDIKKLAHKTLWTEAVKAEFEGLENLKAWTYVDSVRDGSNVVSARWVFAWKIDEQGNVTKPKARLVARGFSQ 240
            S  KK     +W +A++ EF+ L N   W+ V    D  NVVS +W+F  K +  G++++ KARLVARGFSQ
Sbjct:   29 SSYKKAMEIPVWKQAMQEEFDALTNQGTWSLVPPQAD-KNVVSCKWIFKVKKNSDGSISRQKARLVARGFSQ 99          
BLAST of mRNA_H-paniculata_contig51650.12495.1 vs. uniprot
Match: A0A2G8SUK6_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8SUK6_9APHY)

HSP 1 Score: 63.2 bits (152), Expect = 8.770e-10
Identity = 32/76 (42.11%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   13 PVCFSDIKKLAHKTLWTEAVKAEFEGLENLKAWTYVDSVRDGSNVVSARWVFAWKIDEQGNVTKPKARLVARGFSQ 240
            P   ++ K+      W EA+K E E L     W  ++    G+N+VS RWVF  K D  GN+++ +ARLVARGFSQ
Sbjct: 1001 PASLAEAKRRPEWPRWEEAMKEEMEALSKHGTWR-LEHPPPGTNIVSCRWVFHAKKDASGNISRYRARLVARGFSQ 1075          
BLAST of mRNA_H-paniculata_contig51650.12495.1 vs. uniprot
Match: A0A182GGE6_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GGE6_AEDAL)

HSP 1 Score: 62.8 bits (151), Expect = 1.190e-9
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    4 EEPPVCFSDIKKLAHKTLWTEAVKAEFEGLENLKAWTYVDSVRDGSNVVSARWVFAWKIDEQGNVTKPKARLVARGFSQ 240
            E+ P   SD++    + LW +A+K E + LE    WT +  +  G + +S +W+F  K  E G  T+ KARLVARGFSQ
Sbjct:  650 EDLPESLSDLQIRDDRNLWQQAMKEEMDSLERNGTWT-LTKLPAGRSAISCKWIFKIKPGEDGQPTRYKARLVARGFSQ 727          
BLAST of mRNA_H-paniculata_contig51650.12495.1 vs. uniprot
Match: A0A2G8SLM4_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8SLM4_9APHY)

HSP 1 Score: 62.8 bits (151), Expect = 1.190e-9
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   13 PVCFSDIKKLAHKTLWTEAVKAEFEGLENLKAWTYVDSVRDGSNVVSARWVFAWKIDEQGNVTKPKARLVARGFSQ 240
            P   ++ K+      W EA+K E E L     W  V+    G+N+VS RWVF  K D  GN+++ +ARLVARGFSQ
Sbjct:  998 PASLAEAKRRPEWPRWEEAMKEEMEALAKHGTWR-VERPPLGTNIVSCRWVFHAKKDASGNISRYRARLVARGFSQ 1072          
BLAST of mRNA_H-paniculata_contig51650.12495.1 vs. uniprot
Match: A0A2G8S3F3_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8S3F3_9APHY)

HSP 1 Score: 62.8 bits (151), Expect = 1.200e-9
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   13 PVCFSDIKKLAHKTLWTEAVKAEFEGLENLKAWTYVDSVRDGSNVVSARWVFAWKIDEQGNVTKPKARLVARGFSQ 240
            P   ++ K+      W EA+K E E L     W  V+    G+N+VS RWVF  K D  GN+++ +ARLVARGFSQ
Sbjct: 1014 PASLAEAKRRPEWPRWEEAMKEEMEALAKHGTWR-VERPPLGTNIVSCRWVFHAKKDASGNISRYRARLVARGFSQ 1088          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51650.12495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J7K416_LASNI9.320e-1342.11Lectin receptor kinase n=1 Tax=Lasius niger TaxID=... [more]
A0A0J7KM48_LASNI1.220e-1242.11Integrase catalytic domain-containing protein n=2 ... [more]
A0A5C3EBA0_9BASI5.270e-1141.25Related to Retrotransposon protein n=1 Tax=Ustilag... [more]
A0A2S2NPY8_SCHGA9.540e-1142.11Copia protein (Fragment) n=1 Tax=Schizaphis gramin... [more]
UPI001E2759C69.670e-1141.56uncharacterized protein LOC123684598 n=1 Tax=Harmo... [more]
A0A2P6P7L4_ROSCH8.500e-1043.06Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2G8SUK6_9APHY8.770e-1042.11Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A182GGE6_AEDAL1.190e-940.51Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A2G8SLM4_9APHY1.190e-943.42Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A2G8S3F3_9APHY1.200e-943.42Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51650contigH-paniculata_contig51650:1010..1249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score66.2
Seed ortholog evalue7.7e-09
Seed eggNOG ortholog5270.UM01393P0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Retrotransposon gag protein
EggNOG OGs38DPC@33154,3NUZ7@4751,3V2N5@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930509.5362322-CDS-H-paniculata_contig51650:1009..12491622930509.5362322-CDS-H-paniculata_contig51650:1009..1249Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51650 1010..1249 +
1691481324.6004465-CDS-H-paniculata_contig51650:1009..12491691481324.6004465-CDS-H-paniculata_contig51650:1009..1249Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51650 1010..1249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51650.12495.1prot_H-paniculata_contig51650.12495.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51650 1010..1249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51650.12495.1

>prot_H-paniculata_contig51650.12495.1 ID=prot_H-paniculata_contig51650.12495.1|Name=mRNA_H-paniculata_contig51650.12495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
TEEPPVCFSDIKKLAHKTLWTEAVKAEFEGLENLKAWTYVDSVRDGSNVV
SARWVFAWKIDEQGNVTKPKARLVARGFSQ
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mRNA from alignment at H-paniculata_contig51650:1010..1249+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51650.12495.1 ID=mRNA_H-paniculata_contig51650.12495.1|Name=mRNA_H-paniculata_contig51650.12495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig51650:1010..1249+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGAGGAGCCCCCTGTTTGTTTTTCAGACATCAAGAAGCTGGCACATAA AACGTTGTGGACTGAGGCAGTCAAAGCAGAGTTTGAGGGCTTGGAAAATC TCAAAGCTTGGACTTATGTAGACAGTGTGCGGGACGGTTCCAATGTTGTC AGTGCGAGATGGGTATTTGCATGGAAAATTGATGAGCAGGGAAACGTTAC AAAGCCAAAGGCAAGGCTTGTAGCTCGAGGGTTTAGCCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig51650:1010..1249+

>mRNA_H-paniculata_contig51650.12495.1 ID=mRNA_H-paniculata_contig51650.12495.1|Name=mRNA_H-paniculata_contig51650.12495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig51650:1010..1249+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGAGGAGCCCCCTGTTTGTTTTTCAGACATCAAGAAGCTGGCACATAA
AACGTTGTGGACTGAGGCAGTCAAAGCAGAGTTTGAGGGCTTGGAAAATC
TCAAAGCTTGGACTTATGTAGACAGTGTGCGGGACGGTTCCAATGTTGTC
AGTGCGAGATGGGTATTTGCATGGAAAATTGATGAGCAGGGAAACGTTAC
AAAGCCAAAGGCAAGGCTTGTAGCTCGAGGGTTTAGCCAAACAGAGGAGC
CCCCTGTTTGTTTTTCAGACATCAAGAAGCTGGCACATAAAACGTTGTGG
ACTGAGGCAGTCAAAGCAGAGTTTGAGGGCTTGGAAAATCTCAAAGCTTG
GACTTATGTAGACAGTGTGCGGGACGGTTCCAATGTTGTCAGTGCGAGAT
GGGTATTTGCATGGAAAATTGATGAGCAGGGAAACGTTACAAAGCCAAAG
GCAAGGCTTGTAGCTCGAGGGTTTAGCCAA
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