mRNA_H-paniculata_contig5165.12494.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5165.12494.1
Unique NamemRNA_H-paniculata_contig5165.12494.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5165.12494.1 vs. uniprot
Match: A0A6H5K075_9PHAE (DUF4470 domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K075_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.420e-27
Identity = 54/84 (64.29%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:    1 TQDTRMLVSTLHCCFVRVHRASGSFPEEDVDGNPWFVLRDRLVRVKETRSDDPKAELMISFLLGSNTLASARHPGSLQLELRLQ 252
            +Q+ + L+STLHCCFVRV+R SG FP ED +G PW+VLR+RL+RVKET  DDP+AELM+SFLLGS TL  A +   ++LELRLQ
Sbjct:  817 SQNVKTLISTLHCCFVRVNRGSGPFPLEDKEGEPWYVLRERLLRVKETVPDDPEAELMVSFLLGSKTLIPA-NANQIELELRLQ 899
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5165.12494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K075_9PHAE1.420e-2764.29DUF4470 domain-containing protein (Fragment) n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5165contigH-paniculata_contig5165:13458..13709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930509.4550664-CDS-H-paniculata_contig5165:13457..136941622930509.4550664-CDS-H-paniculata_contig5165:13457..13694Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5165 13458..13694 -
1691481324.578776-CDS-H-paniculata_contig5165:13457..136941691481324.578776-CDS-H-paniculata_contig5165:13457..13694Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5165 13458..13694 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930509.4754112-UTR-H-paniculata_contig5165:13694..137091622930509.4754112-UTR-H-paniculata_contig5165:13694..13709Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5165 13695..13709 -
1691481324.5895002-UTR-H-paniculata_contig5165:13694..137091691481324.5895002-UTR-H-paniculata_contig5165:13694..13709Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5165 13695..13709 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5165.12494.1prot_H-paniculata_contig5165.12494.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5165 13458..13694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5165.12494.1

>prot_H-paniculata_contig5165.12494.1 ID=prot_H-paniculata_contig5165.12494.1|Name=mRNA_H-paniculata_contig5165.12494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
MLVSTLHCCFVRVHRASGSFPEEDVDGNPWFVLRDRLVRVKETRSDDPKA
ELMISFLLGSNTLASARHPGSLQLELRLQ
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mRNA from alignment at H-paniculata_contig5165:13458..13709-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5165.12494.1 ID=mRNA_H-paniculata_contig5165.12494.1|Name=mRNA_H-paniculata_contig5165.12494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at H-paniculata_contig5165:13458..13709- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACACAGGATACGCGGATGTTGGTAAGCACGCTACACTGCTGTTTCGTCCG
CGTTCATCGCGCCAGCGGCTCCTTCCCCGAGGAGGACGTTGACGGCAACC
CGTGGTTCGTGCTTCGCGATCGCCTGGTAAGGGTGAAGGAGACTCGCTCG
GATGATCCCAAGGCCGAGCTCATGATATCTTTCCTGCTGGGATCAAACAC
GCTGGCGTCGGCACGTCACCCGGGCAGTCTGCAGCTTGAACTTCGCTTGC
AG
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Coding sequence (CDS) from alignment at H-paniculata_contig5165:13458..13709-

>mRNA_H-paniculata_contig5165.12494.1 ID=mRNA_H-paniculata_contig5165.12494.1|Name=mRNA_H-paniculata_contig5165.12494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig5165:13458..13709- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGGTAAGCACGCTACACTGCTGTTTCGTCCGCGTTCATCGCGCCAG
CGGCTCCTTCCCCGAGGAGGACGTTGACGGCAACCCGTGGTTCGTGCTTC
GCGATCGCCTGGTAAGGGTGAAGGAGACTCGCTCGGATGATCCCAAGGCC
GAGCTCATGATATCTTTCCTGCTGGGATCAAACACGCTGGCGTCGGCACG
TCACCCGGGCAGTCTGCAGCTTGAACTTCGCTTGCAGATGTTGGTAAGCA
CGCTACACTGCTGTTTCGTCCGCGTTCATCGCGCCAGCGGCTCCTTCCCC
GAGGAGGACGTTGACGGCAACCCGTGGTTCGTGCTTCGCGATCGCCTGGT
AAGGGTGAAGGAGACTCGCTCGGATGATCCCAAGGCCGAGCTCATGATAT
CTTTCCTGCTGGGATCAAACACGCTGGCGTCGGCACGTCACCCGGGCAGT
CTGCAGCTTGAACTTCGCTTGCAG
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