mRNA_H-paniculata_contig5165.12493.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5165.12493.1
Unique NamemRNA_H-paniculata_contig5165.12493.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5165.12493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5165contigH-paniculata_contig5165:1949..2325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size377
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930509.384683-UTR-H-paniculata_contig5165:1948..20251622930509.384683-UTR-H-paniculata_contig5165:1948..2025Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5165 1949..2025 +
1691481324.5604188-UTR-H-paniculata_contig5165:1948..20251691481324.5604188-UTR-H-paniculata_contig5165:1948..2025Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5165 1949..2025 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930509.3998702-CDS-H-paniculata_contig5165:2025..23251622930509.3998702-CDS-H-paniculata_contig5165:2025..2325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5165 2026..2325 +
1691481324.5687969-CDS-H-paniculata_contig5165:2025..23251691481324.5687969-CDS-H-paniculata_contig5165:2025..2325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5165 2026..2325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5165.12493.1prot_H-paniculata_contig5165.12493.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5165 2026..2325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5165.12493.1

>prot_H-paniculata_contig5165.12493.1 ID=prot_H-paniculata_contig5165.12493.1|Name=mRNA_H-paniculata_contig5165.12493.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
MPTALLWVINTSNKKLADGNAHLVSYLFSYSTPVASRNCQLPRQTWASSF
FFRTRVQRVTLLATSSVMELVKLTSPRGTEHGTSRMYSVCSRGLHLLKLT
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mRNA from alignment at H-paniculata_contig5165:1949..2325+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5165.12493.1 ID=mRNA_H-paniculata_contig5165.12493.1|Name=mRNA_H-paniculata_contig5165.12493.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=377bp|location=Sequence derived from alignment at H-paniculata_contig5165:1949..2325+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTACATGAAACATCCAAAAATATTTGGCCGGTCGATCAAAGGTTTGAAAG
GATAAAAAACACCCAAAAATACAACAAATGCCTACGGCACTACTTTGGGT
AATAAATACATCGAATAAGAAGTTAGCTGATGGCAATGCCCATCTCGTCT
CGTATTTGTTTTCGTATTCCACCCCAGTAGCTTCTAGGAACTGCCAGCTG
CCGCGCCAGACATGGGCCTCTTCTTTTTTTTTTCGCACACGAGTGCAGCG
AGTCACATTATTAGCGACGTCGTCGGTCATGGAATTAGTAAAATTGACCT
CTCCCAGAGGTACCGAACATGGGACTTCACGGATGTACTCCGTCTGTAGC
CGTGGGCTGCATCTACTTAAGCTTACT
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Coding sequence (CDS) from alignment at H-paniculata_contig5165:1949..2325+

>mRNA_H-paniculata_contig5165.12493.1 ID=mRNA_H-paniculata_contig5165.12493.1|Name=mRNA_H-paniculata_contig5165.12493.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig5165:1949..2325+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTACGGCACTACTTTGGGTAATAAATACATCGAATAAGAAGTTAGC
TGATGGCAATGCCCATCTCGTCTCGTATTTGTTTTCGTATTCCACCCCAG
TAGCTTCTAGGAACTGCCAGCTGCCGCGCCAGACATGGGCCTCTTCTTTT
TTTTTTCGCACACGAGTGCAGCGAGTCACATTATTAGCGACGTCGTCGGT
CATGGAATTAGTAAAATTGACCTCTCCCAGAGGTACCGAACATGGGACTT
CACGGATGTACTCCGTCTGTAGCCGTGGGCTGCATCTACTTAAGCTTACT
ATGCCTACGGCACTACTTTGGGTAATAAATACATCGAATAAGAAGTTAGC
TGATGGCAATGCCCATCTCGTCTCGTATTTGTTTTCGTATTCCACCCCAG
TAGCTTCTAGGAACTGCCAGCTGCCGCGCCAGACATGGGCCTCTTCTTTT
TTTTTTCGCACACGAGTGCAGCGAGTCACATTATTAGCGACGTCGTCGGT
CATGGAATTAGTAAAATTGACCTCTCCCAGAGGTACCGAACATGGGACTT
CACGGATGTACTCCGTCTGTAGCCGTGGGCTGCATCTACTTAAGCTTACT
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