mRNA_H-paniculata_contig51641.12491.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51641.12491.1
Unique NamemRNA_H-paniculata_contig51641.12491.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig51641.12491.1 vs. uniprot
Match: D7FYF7_ECTSI (DRP, dynamin-related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF7_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 7.190e-17
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:    1 LQVTLSTYVDLVCKSMFDTVPKQVQSFLVIGTYHGLEGWMLDRVPADDLERLLSEDSQTQWKRREMERKLALFEEGLKIVRDA 249
            LQV L  Y D+VC+ +FD++PKQV  FLV G   G   WMLD+V   DL+R L+ED+ +Q KR+E+E KL+ FEE  KI+++A
Sbjct:  545 LQVILHAYSDVVCRRLFDSIPKQVHLFLVDGICKGFVTWMLDKVDETDLQRWLAEDALSQRKRKELESKLSQFEEAAKILKNA 627
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51641.12491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYF7_ECTSI7.190e-1751.81DRP, dynamin-related protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51641contigH-paniculata_contig51641:178..435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue4.5e-15
Seed eggNOG ortholog2880.D7FYF7
KEGG koko:K14754,ko:K17065
KEGG Pathwayko04139,ko04214,ko04217,ko04621,ko04668,ko05162,ko05164,ko05165,map04139,map04214,map04217,map04621,map04668,map05162,map05164,map05165
Hectar predicted targeting categoryother localisation
GOsGO:0000266,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0007005,GO:0008017,GO:0008092,GO:0008150,GO:0009987,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0044424,GO:0044464,GO:0048285,GO:0071840
EggNOG free text desc.mitochondrial fission
EggNOG OGsCOG0699@1,KOG0446@2759
EC3.6.5.5
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko04131,ko04147
Exons1
Model size258
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930509.194694-CDS-H-paniculata_contig51641:177..4351622930509.194694-CDS-H-paniculata_contig51641:177..435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51641 178..435 +
1691481324.5127883-CDS-H-paniculata_contig51641:177..4351691481324.5127883-CDS-H-paniculata_contig51641:177..435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51641 178..435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51641.12491.1prot_H-paniculata_contig51641.12491.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51641 178..435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51641.12491.1

>prot_H-paniculata_contig51641.12491.1 ID=prot_H-paniculata_contig51641.12491.1|Name=mRNA_H-paniculata_contig51641.12491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
LQVTLSTYVDLVCKSMFDTVPKQVQSFLVIGTYHGLEGWMLDRVPADDLE
RLLSEDSQTQWKRREMERKLALFEEGLKIVRDASI*
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mRNA from alignment at H-paniculata_contig51641:178..435+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51641.12491.1 ID=mRNA_H-paniculata_contig51641.12491.1|Name=mRNA_H-paniculata_contig51641.12491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=258bp|location=Sequence derived from alignment at H-paniculata_contig51641:178..435+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCAGGTGACACTCTCGACCTACGTCGACCTCGTTTGCAAAAGCATGTT
CGACACAGTGCCGAAGCAGGTGCAGAGTTTCCTTGTGATCGGCACCTACC
ACGGACTTGAAGGCTGGATGCTGGACAGGGTTCCAGCAGATGACTTGGAA
AGGTTACTCTCTGAAGACTCCCAAACTCAGTGGAAACGAAGAGAGATGGA
GCGTAAGTTGGCTCTATTCGAAGAGGGCTTAAAGATCGTTCGCGACGCGA
GCATTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig51641:178..435+

>mRNA_H-paniculata_contig51641.12491.1 ID=mRNA_H-paniculata_contig51641.12491.1|Name=mRNA_H-paniculata_contig51641.12491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig51641:178..435+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCAGGTGACACTCTCGACCTACGTCGACCTCGTTTGCAAAAGCATGTT
CGACACAGTGCCGAAGCAGGTGCAGAGTTTCCTTGTGATCGGCACCTACC
ACGGACTTGAAGGCTGGATGCTGGACAGGGTTCCAGCAGATGACTTGGAA
AGGTTACTCTCTGAAGACTCCCAAACTCAGTGGAAACGAAGAGAGATGGA
GCGTAAGTTGGCTCTATTCGAAGAGGGCTTAAAGATCGTTCGCGACGCGA
GCATTTAACTTCAGGTGACACTCTCGACCTACGTCGACCTCGTTTGCAAA
AGCATGTTCGACACAGTGCCGAAGCAGGTGCAGAGTTTCCTTGTGATCGG
CACCTACCACGGACTTGAAGGCTGGATGCTGGACAGGGTTCCAGCAGATG
ACTTGGAAAGGTTACTCTCTGAAGACTCCCAAACTCAGTGGAAACGAAGA
GAGATGGAGCGTAAGTTGGCTCTATTCGAAGAGGGCTTAAAGATCGTTCG
CGACGCGAGCATTTAA
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