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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 63.5 |
| Seed ortholog evalue | 6.5e-08 |
| Seed eggNOG ortholog | 2880.D8LR92 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | corticospinal neuron axon guidance through spinal cord |
| EggNOG OGs | COG4886@1,KOG4237@2759 |
| Ec32 ortholog description | Hypothetical leucine rich repeat protein |
| Ec32 ortholog | Ec-06_003430.1 |
| COG Functional cat. | KLT |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 5 |
| Model size | 314 |
| Cds size | 312 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5160.12487.1 >prot_H-paniculata_contig5160.12487.1 ID=prot_H-paniculata_contig5160.12487.1|Name=mRNA_H-paniculata_contig5160.12487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
HLADNEFTTLPSTVFSDLPRLRHLNLLGNDDLQCVPANSAEDVVVSSDDI
RDGICGCSPVEAVFCDAGVLCSAGSEGHTCGDGALVEAGDKTTVTTWVTA
YDET back to topmRNA from alignment at H-paniculata_contig5160:6080..10431- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig5160.12487.1 ID=mRNA_H-paniculata_contig5160.12487.1|Name=mRNA_H-paniculata_contig5160.12487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4352bp|location=Sequence derived from alignment at H-paniculata_contig5160:6080..10431- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATCTGGCGGACAATGAATTCACCACGTTGCCCAGCACGGTATTCTCCGA
CCTGCCTCGACTTCGCCACTTGTAAGTGATGTTTGCCTCGTGAACATGCT
TCAGTTTCGTAGCGCGAGAGAGCGCGGATGGAGTAAATCACGTTCATGGC
CGGACTGTCTGCCGGTATAGCGCGTGCAGTGTGCTACTTAGAGATAAGCC
AATGCTTATGGTCAGTCAGGAATGTTCACAACAATGTTCCTGGTCGCTCC
TTCCGTCAACCACTCGAAAGCTGCACGATGTTGAGGGTTTCTGCTGAAGA
CAACAATTATGGAGACAGTTTCAGCAAGGAAGGGTAGCCCACCTGGTCCT
CGTCTACACACCAACGTCCCCATAAAATTTGATAAAAGTGACTTCATTTG
TTATCGGGGGGAGGCTTCGACCGTGAAGCTCGTTTTACAACGCTTTCGAA
GGCGTGTTGGTGTCGTATGAAACGCGTCGGCCCCACTCTACCTCTGCATG
GTGTTGCATGGGTTGCATGTTCCCGAGGCCCAGCAACGGAGCAACATTGA
ATTGTGCCGACGGCAATCCTTGGCGATCGAGACCAGAGACATGGAAGAAT
TTAGATTGCCGGGGGGGGGGGGGGGTCGGTATCGCCCTGGGGAATGTTGT
CAGATTGGACTTTCCTCCCTCTCACCCGTCGGATATTTTTACAGGCAAAA
AATTGCGAAGTGCTCCTTGACCTGTTGCCGCTGCTCGTTTCTCGTCTTTT
TGTGTATCCCTGACGCTCTCTTGACAGGAATTTGCTCGGTAACGATGATC
TGCAGTGTGTCCCTGCCAAGTGAGTTCGAGCGCATACACATTTGAGGGTC
CGTTTGTCGATATATTCAGGAGGAGAAGATGTTTACGCGATATCCACCAT
AGAGGCGTTGGGCCCGGAAACTGAGGACTGGGAGCGTCGTTCACCTAGGC
TACTTTTGTATCTATCTGTTGATCGGTGTTTTTGAAGCTCAGATAATAGT
CCTACGCAAGTGGGTTGATGAAATGAAACGCGCGTACAATAACAGCAAGA
AGTCCCCACGTCGTATCAAGATATCGTTATGGGGGTTTGACGGTGTGGTC
CGTTTGACTCAGTGCAGCGGGCTTGATCGGCTCCATCTTGACTTGTGGAG
ATATTGCAGTTGTTGTCAGTCGACTACGGTGTGCACTAGTGTACAGCACT
CCGCTGACCCTTTGCCATTCACGGAATCTGAATGGACCCAGTTCGCTCTA
GGAAGGAGACTGTCCTCTGTTTGAAGGTGCGTAGCATGGTAACGACAATC
ACCCTGGATGTATGGCCTGTATAAGCTTACTTGAAAATTCCCCATCCCCC
TCCCCATCGCTGCATGTGCGCGCCGACTCTCAATTCCCCGCTATGTGCTT
CTTCGTGGCAGTTCTGCGGAAGATGTGGTCGTCTCGTCCGATGATATCAG
GGACGGTATCTGCGGTGAGTTTTGCTGACTGGTTGTGTTTCGTTTAAAAC
AAAATGCGGTGTTTTTCTTGTTGGCATTAGCGTTGTTGTCTTTGATTGAT
TCTTTTAATGTGTTCGCTTGCCGGTTGAATAGCTAAACCGATGTTTGACG
GCGAGAGACCGGCGGGAGACGGCTACCCCTAGGGGGCAAAGGTTATGCCG
ACAGTGTTGGGGGCAATAAAAGGGCACCACTTGAGCATGTCTTTTTAGTA
GCAGTCTAGACTTCTCCTAGGTAGGTGGACGTGGGTTCGAACATGAAAAA
TGAGTATACTTCCCGAGTGAAGTTGAGTTTATCTTGGTCAAGGACACGAC
AACTGATATCGCCTTTGTTGTAGATTTTTCTGGGAACATTTCGCAAGCCA
ACAGCCTAGCGACTCCAAGGAACGTTCACAGGAGTTGGCATTGGTGGTGT
GTGAACACGTTGTTAATGAATGTTGTACCAACAACCCCTGGCTTCAAACG
GAATTCGTCGACAGCAGCAGTAGCACGCGGGCTATAACGATCCTTTCACC
AACTTGAATTGCGACGTTTAAGTCAGCTGTCGCAATTCAGACAGGGTCTG
ACGGTGGGCATCGTACGTCGTGTGCCTTCTTCCTCTTCGATTTTATCTAC
GAATGTTCAGGTTGCTCTCCAGTCGAAGCCGTTTTCTGCGATGCCGGGGT
GCTTTGTTCTGCAGGGAGCGAAGGGCATACCTGCGGAGACGGCGGTGAGT
GGCATGATTCATGCCCCATTTTCCCCTTTTTTCACCTTACTTGAGGATTG
TCGTATATGCCCCTCGCCTGGGGAACGAAATTCACGGCCATGTCGAGAAT
GATTGGTGCCGCTTACACGAATACATATATGATTCGAATACGATTTAGCT
CGAATCATTGACTTCGTTACGATTTTCAGCGTAGGATCGGCTCAGTTGGG
AGCGGCGTCTTCGTCGGCCGGGCCACGGCGAGGGACGGACGTCTGTATAC
GCTTGGTATTTAATGTATAACGATAAGCTACTTTGACACACGCAAAGGGT
AATGTTTTTATTTGCAGTAAGGGGCATCAGAACTCGCAGTTTCATCTCAC
CTATGCCCCCTCCCCCCCCCCCCCATTCCGCCCCCCCTTTTGGGTAGAAA
CGTTTTATTTCATTGGCGGCTCCTAGTAAGCGTTCTTGGCTGAAAGCTGA
AATGTTCGCAAAAACGATCCGTATTTGTTTTTGTTTTGTTGATACACGCG
CGTACACAGCTCGTAGTATAAATGAGTTACATTACAACCTCAGCATGAGT
ACAAAAATGGTATGGCACGGACCTTTTACGGCAGCGAGCGTCAAAGTGCG
TTGACTTGAAAACGCGGGTTTGTAGATAACAGGGGAATATTATATCAACC
AGATGTTCACTTGTAGGCCATGTAATGTCCACGTACAATGCACACGCGAA
TGATGCAGTGGTGCCCCCTGGTAAAGGCAATAGTCGATGCAGTACGTGTG
CGACGGGGTGCAGAGTTTCTGATAATCGGCCGGAATGAGTTCAAGATATA
TGTCACGTAGTCGGTGTCCCGTTGAGCTGCGAAGCAGCTTCCCCAAATAT
TCAAGTCCTTTCAAAATTCCGCTCAGCTGGTGGTCGTGCCTGTTTGGCTG
TGGATGAGTTGTAGCAGTAGTGATGGGGGGAGTAAGCGCTTGTTCATGCA
TGACTCTTTCAGCTTAATATACCCCAAGTTCCCATTATTGGGTTTACTAG
GCCCCACGCTATGGCTTGCATTCCTAAAACACAAGTACAGGGCGTGTCGG
AGGGCTGAGCAATCGTTGCATCCTTATCCCCTATTTGCTGTCTCATGTGT
CACACCCGCATGTTTTGATGTTTGTTCTGCACATTGAAGCCTTTTAGTTG
TAATTGCTGGTCATAAAAACGTATTATTCGAAAGGTTTAATGAGTGATAT
CCAACGTATGAGAACATGACCAGCCTGGGCTATTCAATATTCTCCCCCAG
GTCATATACGGGTAGCTTCACCCCGCCCCCCGAAGGTCCGCCCTCTCGAA
GACGCGTGGTCAACGGTCTAACACCTCCGACGTGCGAAACATGAGTCCTT
CCCCTTCCGCCTTGCAGGTTTTAGGCTTTTTTGTGTTTGGGGGCATAGAT
GCCAAAATTGCGACTTGCGATGCTCGTTGATTTGCTGTATTGTTGTATCA
TACGTAGGAGTCGGAGATTCACAGTGGCAGGGATTTAACCTGAGCACATC
TCAGGCGCAATGCTTGACTCTCGCTTTGTAAACATAGAAGAGCGTTACCC
GCCCCCCCCCCCTCCATCGCTGAGCGACTCCTTTACGATAAGTTTGCGGT
GAAATATGCGCGCAGCAACCCTCTTATTTTCCGGCGGCAAAGGTCATGTC
TGGTTGGTATTTGGGTCTTAAAGTTCGATGGGAGCAGAACGAGCATTAAT
AGCATCATTGCAGCATAAGGCTCCAATGATATGCGCGAAATTTCATTCGA
AATTACAGTAGAGATACCTACTCTCGCGGATGTGATCGCTTTTTTTCGAG
CCCGGAACTTCACAGAAGCGAGACGAATGGTTTACGTCAGAGGATGTATC
ATCCGTTCAAGACAAGTGCGACGTCACGCACAATGTGCCACAATTGTGGT
GAATTGAAGCGATTGCAGCTTGGATAACGTCTAACGTCTCGGATAAAGTC
TCTCGTAGTTCAAGTAGCAGCAAAGTGAGGCTATGACGGGAAACTAATAT
ACACTATATGCATGCCTGCCTTCGTTCGACTCTATTGGCTCATTGGCTTG
GTCGCAACAAACTACTCGGTTCTCGGAATTTATCATCAGCTCTTGTGGAG
GCTGGCGATAAAACAACCGTCACAACATGGGTCACCGCCTACGACGAGAC
GG back to topCoding sequence (CDS) from alignment at H-paniculata_contig5160:6080..10431- >mRNA_H-paniculata_contig5160.12487.1 ID=mRNA_H-paniculata_contig5160.12487.1|Name=mRNA_H-paniculata_contig5160.12487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig5160:6080..10431- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATCTGGCGGACAATGAATTCACCACGTTGCCCAGCACGGTATTCTCCGA
CCTGCCTCGACTTCGCCACTTCATCTGGCGGACAATGAATTCACCACGTT
GCCCAGCACGGTATTCTCCGACCTGCCTCGACTTCGCCACTTGAATTTGC
TCGGTAACGATGATCTGCAGTGTGTCCCTGCCAAGAATTTGCTCGGTAAC
GATGATCTGCAGTGTGTCCCTGCCAATTCTGCGGAAGATGTGGTCGTCTC
GTCCGATGATATCAGGGACGGTATCTGCGTTCTGCGGAAGATGTGGTCGT
CTCGTCCGATGATATCAGGGACGGTATCTGCGGTTGCTCTCCAGTCGAAG
CCGTTTTCTGCGATGCCGGGGTGCTTTGTTCTGCAGGGAGCGAAGGGCAT
ACCTGCGGAGACGGCGGTTGCTCTCCAGTCGAAGCCGTTTTCTGCGATGC
CGGGGTGCTTTGTTCTGCAGGGAGCGAAGGGCATACCTGCGGAGACGGCG
CTCTTGTGGAGGCTGGCGATAAAACAACCGTCACAACATGGGTCACCGCC
TACGACGAGACGCTCTTGTGGAGGCTGGCGATAAAACAACCGTCACAACA
TGGGTCACCGCCTACGACGAGACG back to top
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