mRNA_H-paniculata_contig51585.12482.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51585.12482.1
Unique NamemRNA_H-paniculata_contig51585.12482.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig51585.12482.1 vs. uniprot
Match: A0A3P6DWV1_BRAOL (Photosystem I n=1 Tax=Brassica oleracea TaxID=3712 RepID=A0A3P6DWV1_BRAOL)

HSP 1 Score: 506 bits (1302), Expect = 6.750e-177
Identity = 241/327 (73.70%), Postives = 273/327 (83.49%), Query Frame = 1 
Query:    1 DKNDLFLTIGPGDFLIHHAIPLGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLSMFWMLNTIGWVTFYWHWKHVTIWQGNAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGLNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGY---ILTYAAFEFYMAKQSMIEREKKREKLVLKYSQKRKSLLLEFKKANTFSDQMEIHKKIEKLPRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVKKASW 972
            + N LFLTIGPGDFL+HHAI LGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYL++FWMLNTIGWVTFYWHWKH+T+WQGN +QFNESS Y+MGWLRDYLWLNSS LINGYNP+G+NSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RW+DKPVALSIVQARLVGL HF+      I+        MAK+S+I REKKR+KL  KY   R+SL  E  +  + S++ +IH K++  PRNS+  RL  RC+ TGR R  YRDFGL  H++REM   CLLPG  ++SW
Sbjct:  116 NSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSDPICIIIIDNKRNLSIMAKKSLIYREKKRQKLEQKYHLIRRSLKKEISEIPSLSEKWKIHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVQACLLPGATRSSW 442
[Close]
BLAST of mRNA_H-paniculata_contig51585.12482.1 vs. uniprot
Match: A0A2U1MPB7_ARTAN (Photosystem I n=40 Tax=Anthemideae TaxID=102810 RepID=A0A2U1MPB7_ARTAN)

HSP 1 Score: 501 bits (1290), Expect = 1.250e-176
Identity = 238/316 (75.32%), Postives = 267/316 (84.49%), Query Frame = 1 
Query:   28 GPGDFLIHHAIPLGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLSMFWMLNTIGWVTFYWHWKHVTIWQGNAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGLNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFT-VGYILTYAAFEFYMAKQSMIEREKKREKLVLKYSQKRKSLLLEFKKANTFSDQMEIHKKIEKLPRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVKKASW 972
            GPGDFL+HHAI LGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYL++FWMLNTIGWVTFYWHWKH+T+WQGN +QFNESS Y+MGWLRDYLWLNSS LINGYNP+G+NSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RWRDKPVALSIVQARLVGL HF+    I+        MAK+S+I+REKKR+KL  KY   R+S   E  K  + SD+ EI+ K++  PRNS+  RL  RC+ TGR R  YRDFGL  H++REM H CLLPG  ++SW
Sbjct:   26 GPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSDPTCIMDTNRNLTSMAKKSLIQREKKRQKLEQKYHSIRRSSKEEISKVRSLSDKWEIYGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW 341
[Close]
BLAST of mRNA_H-paniculata_contig51585.12482.1 vs. uniprot
Match: A0A0D3EEW1_BRAOL (Photosystem I n=2 Tax=Brassica oleracea TaxID=3712 RepID=A0A0D3EEW1_BRAOL)

HSP 1 Score: 500 bits (1287), Expect = 4.640e-174
Identity = 238/327 (72.78%), Postives = 270/327 (82.57%), Query Frame = 1 
Query:    1 DKNDLFLTIGPGDFLIHHAIPLGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLSMFWMLNTIGWVTFYWHWKHVTIWQGNAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGLNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGY---ILTYAAFEFYMAKQSMIEREKKREKLVLKYSQKRKSLLLEFKKANTFSDQMEIHKKIEKLPRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVKKASW 972
            + N LFLTIGPGDFL+HHAI LGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYL++FWMLNTIGWVTFYWHWKH+T+WQGN +QFNESS Y+MGWLRDYLWLNSS LINGYNP+G+NSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RW+DKPVALSIVQARLVGL HF+      I+        MAK+S+I REKKR+KL  KY   R+S   E ++  +  ++ +IH K++  PRNS   RL  RC+  GR R  YRDFGL  H++REM   CLLPG  ++SW
Sbjct:  153 NSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSDPICIIIIDNKRNLSIMAKKSLIYREKKRQKLEQKYHLIRRSSKKEIREIPSLREKWKIHGKLQSPPRNSGPTRLHRRCFSNGRPRANYRDFGLSGHILREMVQACLLPGATRSSW 479
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BLAST of mRNA_H-paniculata_contig51585.12482.1 vs. uniprot
Match: A0A6S7L0J9_LACSI (Photosystem I n=1 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7L0J9_LACSI)

HSP 1 Score: 502 bits (1292), Expect = 2.680e-171
Identity = 238/324 (73.46%), Postives = 264/324 (81.48%), Query Frame = 1 
Query:    1 DKNDLFLTIGPGDFLIHHAIPLGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLSMFWMLNTIGWVTFYWHWKHVTIWQGNAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGLNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAFEFYMAKQSMIEREKKREKLVLKYSQKRKSLLLEFKKANTFSDQMEIHKKIEKLPRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVKKASW 972
            + N LFLTIGPGDFL+HHAI LGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYL++FWMLNTIGWVTFYWHWKH+T+WQGN +QFNESS Y+MGWLRDYLWLNSS LINGYNP+G+NSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RWRDKPVALSIVQARLVGL HF+                     REKKR+KL  KY   R+S   E  K  + SD+ EI+ K++  PRNS+  RL  RC+ TGR R  YRDFGL  H++REM H CLLPG  ++SW
Sbjct:  426 NSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFS---------------------REKKRQKLEQKYHLIRRSSKKEISKVRSLSDKWEIYGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW 728
[Close]
BLAST of mRNA_H-paniculata_contig51585.12482.1 vs. uniprot
Match: A0A6S7LXY5_LACSI (Photosystem I n=1 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7LXY5_LACSI)

HSP 1 Score: 502 bits (1292), Expect = 2.770e-170
Identity = 238/324 (73.46%), Postives = 264/324 (81.48%), Query Frame = 1 
Query:    1 DKNDLFLTIGPGDFLIHHAIPLGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLSMFWMLNTIGWVTFYWHWKHVTIWQGNAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGLNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAFEFYMAKQSMIEREKKREKLVLKYSQKRKSLLLEFKKANTFSDQMEIHKKIEKLPRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVKKASW 972
            + N LFLTIGPGDFL+HHAI LGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYL++FWMLNTIGWVTFYWHWKH+T+WQGN +QFNESS Y+MGWLRDYLWLNSS LINGYNP+G+NSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RWRDKPVALSIVQARLVGL HF+                     REKKR+KL  KY   R+S   E  K  + SD+ EI+ K++  PRNS+  RL  RC+ TGR R  YRDFGL  H++REM H CLLPG  ++SW
Sbjct:  504 NSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFS---------------------REKKRQKLEQKYHLIRRSSKKEISKVRSLSDKWEIYGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW 806
[Close]
BLAST of mRNA_H-paniculata_contig51585.12482.1 vs. uniprot
Match: A0A0R6MFW0_UNDPI (Photosystem I P700 chlorophyll a apoprotein A2 n=71 Tax=Stramenopiles TaxID=33634 RepID=A0A0R6MFW0_UNDPI)

HSP 1 Score: 470 bits (1210), Expect = 7.580e-159
Identity = 218/221 (98.64%), Postives = 220/221 (99.55%), Query Frame = 1 
Query:    1 DKNDLFLTIGPGDFLIHHAIPLGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLSMFWMLNTIGWVTFYWHWKHVTIWQGNAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGLNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAF 663
            DKNDLFLTIGPGDFL+HHAI LGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLSMFWMLNTIGWVTFYWHWKHVTIWQGNAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYG+NSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAF
Sbjct:  504 DKNDLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLSMFWMLNTIGWVTFYWHWKHVTIWQGNAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAF 724
[Close]
BLAST of mRNA_H-paniculata_contig51585.12482.1 vs. uniprot
Match: A0A7T7IGM3_9STRA (Photosystem I P700 chlorophyll a apoprotein A2 n=3 Tax=Stichogloea TaxID=82160 RepID=A0A7T7IGM3_9STRA)

HSP 1 Score: 465 bits (1197), Expect = 6.910e-157
Identity = 213/221 (96.38%), Postives = 219/221 (99.10%), Query Frame = 1 
Query:    1 DKNDLFLTIGPGDFLIHHAIPLGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLSMFWMLNTIGWVTFYWHWKHVTIWQGNAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGLNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAF 663
            DKNDLFLTIGPGDFL+HHAI LGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLSMFWMLNTIGWVTFYWHWKHVTIWQGNAAQFNESSNY+MGWLRDYLWLNSSPLINGYNPYG+N+LSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETLVWAHERTPLANLVRW+DKPVALSIVQARLVGL HFTVGYILTYAAF
Sbjct:  504 DKNDLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLSMFWMLNTIGWVTFYWHWKHVTIWQGNAAQFNESSNYLMGWLRDYLWLNSSPLINGYNPYGMNNLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFTVGYILTYAAF 724
[Close]
BLAST of mRNA_H-paniculata_contig51585.12482.1 vs. uniprot
Match: A0A446PLP6_TRITD (Photosystem I n=3 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446PLP6_TRITD)

HSP 1 Score: 443 bits (1139), Expect = 8.610e-155
Identity = 199/221 (90.05%), Postives = 212/221 (95.93%), Query Frame = 1 
Query:    1 DKNDLFLTIGPGDFLIHHAIPLGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLSMFWMLNTIGWVTFYWHWKHVTIWQGNAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGLNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAF 663
            + N LFLTIGPGDFL+HHAI LGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYL++FWMLNTIGWVTFYWHWKH+T+WQGN +QFNESS Y+MGWLRDYLWLNSS LINGYNP+G+NSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RWRDKPVALSIVQARLVGL HF+VGYI TYAAF
Sbjct:   38 NSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAF 258
[Close]
BLAST of mRNA_H-paniculata_contig51585.12482.1 vs. uniprot
Match: B2XT53_HETAK (Photosystem I P700 chlorophyll a apoprotein A2 n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT53_HETAK)

HSP 1 Score: 459 bits (1181), Expect = 1.780e-154
Identity = 212/220 (96.36%), Postives = 215/220 (97.73%), Query Frame = 1 
Query:    4 KNDLFLTIGPGDFLIHHAIPLGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLSMFWMLNTIGWVTFYWHWKHVTIWQGNAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGLNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAF 663
            KN LFL IGPGDFL+HHAI LGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYL+MFWMLNTIGWVTFYWHWKHVTIWQGNAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYG+NSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGL HF VGYILTYAAF
Sbjct:  505 KNSLFLAIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAMFWMLNTIGWVTFYWHWKHVTIWQGNAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLAHFAVGYILTYAAF 724
[Close]
BLAST of mRNA_H-paniculata_contig51585.12482.1 vs. uniprot
Match: A0A8H2SIG2_9STRA (Photosystem I n=1 Tax=Nitzschia inconspicua TaxID=303405 RepID=A0A8H2SIG2_9STRA)

HSP 1 Score: 453 bits (1165), Expect = 4.170e-154
Identity = 207/221 (93.67%), Postives = 214/221 (96.83%), Query Frame = 1 
Query:    1 DKNDLFLTIGPGDFLIHHAIPLGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLSMFWMLNTIGWVTFYWHWKHVTIWQGNAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGLNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAF 663
            DKNDLFLTIGPGDFL+HHAI LGLH T LILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYL+MFWMLNTIGWVTFYWHWKH+TIW GN  QFNESSNYIMGWLRDYLWLNSSPLINGYNP+G+N+LSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANL+RWRDKPVALSIVQARLVGLVHF VGYILTYAAF
Sbjct:  350 DKNDLFLTIGPGDFLVHHAIALGLHVTALILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAMFWMLNTIGWVTFYWHWKHMTIWGGNPGQFNESSNYIMGWLRDYLWLNSSPLINGYNPFGMNNLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLIRWRDKPVALSIVQARLVGLVHFAVGYILTYAAF 570
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51585.12482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3P6DWV1_BRAOL6.750e-17773.70Photosystem I n=1 Tax=Brassica oleracea TaxID=3712... [more]
A0A2U1MPB7_ARTAN1.250e-17675.32Photosystem I n=40 Tax=Anthemideae TaxID=102810 Re... [more]
A0A0D3EEW1_BRAOL4.640e-17472.78Photosystem I n=2 Tax=Brassica oleracea TaxID=3712... [more]
A0A6S7L0J9_LACSI2.680e-17173.46Photosystem I n=1 Tax=Lactuca saligna TaxID=75948 ... [more]
A0A6S7LXY5_LACSI2.770e-17073.46Photosystem I n=1 Tax=Lactuca saligna TaxID=75948 ... [more]
A0A0R6MFW0_UNDPI7.580e-15998.64Photosystem I P700 chlorophyll a apoprotein A2 n=7... [more]
A0A7T7IGM3_9STRA6.910e-15796.38Photosystem I P700 chlorophyll a apoprotein A2 n=3... [more]
A0A446PLP6_TRITD8.610e-15590.05Photosystem I n=3 Tax=Triticum turgidum subsp. dur... [more]
B2XT53_HETAK1.780e-15496.36Photosystem I P700 chlorophyll a apoprotein A2 n=3... [more]
A0A8H2SIG2_9STRA4.170e-15493.67Photosystem I n=1 Tax=Nitzschia inconspicua TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51585contigH-paniculata_contig51585:158..1261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score501.1
Seed ortholog evalue3.8e-139
Seed eggNOG ortholog3712.Bo9g161620.1
Preferred namerps14
KEGG koko:K02954,ko:K20101
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003735,GO:0003824,GO:0004004,GO:0004386,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006139,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0042623,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070035,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0199@1,KOG1741@2759
EC3.6.4.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03019
Exons2
Model size975
Cds size975
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930507.7443886-CDS-H-paniculata_contig51585:157..4691622930507.7443886-CDS-H-paniculata_contig51585:157..469Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51585 158..469 -
1691481323.8104124-CDS-H-paniculata_contig51585:157..4691691481323.8104124-CDS-H-paniculata_contig51585:157..469Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51585 158..469 -
1622930507.7648098-CDS-H-paniculata_contig51585:598..12611622930507.7648098-CDS-H-paniculata_contig51585:598..1261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51585 599..1261 -
1691481323.8202226-CDS-H-paniculata_contig51585:598..12611691481323.8202226-CDS-H-paniculata_contig51585:598..1261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51585 599..1261 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51585.12482.1prot_H-paniculata_contig51585.12482.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51585 158..1261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51585.12482.1

>prot_H-paniculata_contig51585.12482.1 ID=prot_H-paniculata_contig51585.12482.1|Name=mRNA_H-paniculata_contig51585.12482.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=325bp
DKNDLFLTIGPGDFLIHHAIPLGLHTTTLILVKGALDARGSKLMPDKKDF
GYSFPCDGPGRGGTCDISAWDAFYLSMFWMLNTIGWVTFYWHWKHVTIWQ
GNAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGLNSLSVWAWMFLFG
HLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIV
QARLVGLVHFTVGYILTYAAFEFYMAKQSMIEREKKREKLVLKYSQKRKS
LLLEFKKANTFSDQMEIHKKIEKLPRNSSRIRLRNRCWRTGRSRGVYRDF
GLCRHMIREMAHNCLLPGVKKASW*
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mRNA from alignment at H-paniculata_contig51585:158..1261-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51585.12482.1 ID=mRNA_H-paniculata_contig51585.12482.1|Name=mRNA_H-paniculata_contig51585.12482.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1104bp|location=Sequence derived from alignment at H-paniculata_contig51585:158..1261- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATAAAAATGATCTTTTCTTGACTATTGGTCCTGGAGATTTTTTAATACA
CCATGCTATTCCTTTAGGATTACATACTACAACTTTAATTTTAGTTAAAG
GAGCATTAGATGCTCGTGGTTCTAAATTAATGCCTGATAAAAAAGATTTT
GGTTATAGTTTCCCTTGTGATGGTCCTGGACGAGGTGGTACTTGTGATAT
TTCTGCTTGGGATGCTTTTTATTTATCTATGTTTTGGATGTTAAATACCA
TTGGTTGGGTTACTTTTTATTGGCATTGGAAACACGTTACAATTTGGCAA
GGTAATGCAGCTCAATTTAATGAATCTTCAAATTATATTATGGGCTGGTT
ACGTGATTATTTATGGTTAAACTCATCTCCATTAATTAATGGTTATAACC
CGTATGGTCTGAATAGTTTATCTGTATGGGCATGGATGTTCCTATTTGGA
CATTTAATTTGGGCCACTGGATTTATGTTCTTAATATCATGGAGAGGTTA
TTGGCAAGAGCTTATAGAAACATTAGTTTGGGCACATGAACGTACGCCTC
TAGCGAACTTAGTTCGTTGGCGCGACAAACCCGTTGCTTTATCAATCGTT
CAAGCTAGATTAGTGGGACTAGTTCATTTTACAGTAGGTTATATTTTAAC
ATATGCAGCTTTTGTTATAGCTTCAACTGCTGGAAAATTTGGTTAATTTA
GATTATACTATCGGTTAGATTTGTATGTAAAAATTATATTTTTCTATAAT
TTTTACATACAAACCTAATAAAATATAAAAAATTTAATTAAGGAATTTTA
TATGGCTAAACAATCGATGATTGAACGAGAAAAAAAAAGAGAAAAATTAG
TTCTAAAGTATAGTCAAAAACGTAAGTCGCTTCTTTTAGAATTTAAAAAG
GCAAATACTTTTTCAGATCAAATGGAAATCCATAAGAAAATAGAAAAGCT
ACCACGTAATAGTTCAAGAATTCGATTACGTAATAGATGTTGGCGAACAG
GACGTAGTCGAGGGGTTTATAGAGATTTTGGTTTATGTCGTCATATGATA
AGAGAAATGGCACATAATTGTTTACTACCAGGTGTAAAGAAAGCTAGTTG
GTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig51585:158..1261-

>mRNA_H-paniculata_contig51585.12482.1 ID=mRNA_H-paniculata_contig51585.12482.1|Name=mRNA_H-paniculata_contig51585.12482.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1950bp|location=Sequence derived from alignment at H-paniculata_contig51585:158..1261- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATAAAAATGATCTTTTCTTGACTATTGGTCCTGGAGATTTTTTAATACA
CCATGCTATTCCTTTAGGATTACATACTACAACTTTAATTTTAGTTAAAG
GAGCATTAGATGCTCGTGGTTCTAAATTAATGCCTGATAAAAAAGATTTT
GGTTATAGTTTCCCTTGTGATGGTCCTGGACGAGGTGGTACTTGTGATAT
TTCTGCTTGGGATGCTTTTTATTTATCTATGTTTTGGATGTTAAATACCA
TTGGTTGGGTTACTTTTTATTGGCATTGGAAACACGTTACAATTTGGCAA
GGTAATGCAGCTCAATTTAATGAATCTTCAAATTATATTATGGGCTGGTT
ACGTGATTATTTATGGTTAAACTCATCTCCATTAATTAATGGTTATAACC
CGTATGGTCTGAATAGTTTATCTGTATGGGCATGGATGTTCCTATTTGGA
CATTTAATTTGGGCCACTGGATTTATGTTCTTAATATCATGGAGAGGTTA
TTGGCAAGAGCTTATAGAAACATTAGTTTGGGCACATGAACGTACGCCTC
TAGCGAACTTAGTTCGTTGGCGCGACAAACCCGTTGCTTTATCAATCGTT
CAAGCTAGATTAGTGGGACTAGTTCATTTTACAGTAGGTTATATTTTAAC
ATATGCAGCTTTTGATAAAAATGATCTTTTCTTGACTATTGGTCCTGGAG
ATTTTTTAATACACCATGCTATTCCTTTAGGATTACATACTACAACTTTA
ATTTTAGTTAAAGGAGCATTAGATGCTCGTGGTTCTAAATTAATGCCTGA
TAAAAAAGATTTTGGTTATAGTTTCCCTTGTGATGGTCCTGGACGAGGTG
GTACTTGTGATATTTCTGCTTGGGATGCTTTTTATTTATCTATGTTTTGG
ATGTTAAATACCATTGGTTGGGTTACTTTTTATTGGCATTGGAAACACGT
TACAATTTGGCAAGGTAATGCAGCTCAATTTAATGAATCTTCAAATTATA
TTATGGGCTGGTTACGTGATTATTTATGGTTAAACTCATCTCCATTAATT
AATGGTTATAACCCGTATGGTCTGAATAGTTTATCTGTATGGGCATGGAT
GTTCCTATTTGGACATTTAATTTGGGCCACTGGATTTATGTTCTTAATAT
CATGGAGAGGTTATTGGCAAGAGCTTATAGAAACATTAGTTTGGGCACAT
GAACGTACGCCTCTAGCGAACTTAGTTCGTTGGCGCGACAAACCCGTTGC
TTTATCAATCGTTCAAGCTAGATTAGTGGGACTAGTTCATTTTACAGTAG
GTTATATTTTAACATATGCAGCTTTTGAATTTTATATGGCTAAACAATCG
ATGATTGAACGAGAAAAAAAAAGAGAAAAATTAGTTCTAAAGTATAGTCA
AAAACGTAAGTCGCTTCTTTTAGAATTTAAAAAGGCAAATACTTTTTCAG
ATCAAATGGAAATCCATAAGAAAATAGAAAAGCTACCACGTAATAGTTCA
AGAATTCGATTACGTAATAGATGTTGGCGAACAGGACGTAGTCGAGGGGT
TTATAGAGATTTTGGTTTATGTCGTCATATGATAAGAGAAATGGCACATA
ATTGTTTACTACCAGGTGTAAAGAAAGCTAGTTGGTAAGAATTTTATATG
GCTAAACAATCGATGATTGAACGAGAAAAAAAAAGAGAAAAATTAGTTCT
AAAGTATAGTCAAAAACGTAAGTCGCTTCTTTTAGAATTTAAAAAGGCAA
ATACTTTTTCAGATCAAATGGAAATCCATAAGAAAATAGAAAAGCTACCA
CGTAATAGTTCAAGAATTCGATTACGTAATAGATGTTGGCGAACAGGACG
TAGTCGAGGGGTTTATAGAGATTTTGGTTTATGTCGTCATATGATAAGAG
AAATGGCACATAATTGTTTACTACCAGGTGTAAAGAAAGCTAGTTGGTAA
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