mRNA_H-paniculata_contig5158.12480.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig5158.12480.1
Unique Name	mRNA_H-paniculata_contig5158.12480.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig5158.12480.1 vs. uniprot
Match: A0A6H5KFX9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFX9_9PHAE)

HSP 1 Score: 358 bits (920), Expect = 4.600e-113
Identity = 173/337 (51.34%), Postives = 234/337 (69.44%), Query Frame = 1

Query:  283 TNAPWEWENAGGEFGLSADWQKAVLLPGS--GE-DIRGERCLSDENQEQVRQILARRDRTAATEKVAACVRTKDRGRYMSEWIAYHYALGVDDIYIYDDDSVDGTPDILKPFIDAGIVHYTFSHIAARRYQLRPLEGFLKQQIDARLEDNTAPKWLAFHDSDEYIFPLNTTLTLPEVLQENDNTCCTQIHRVQYGSSGFSETPPGLLLETFLKHASPGDDKANRLPKFIANLDPAHPEEGMVTPRLRGPHSAQGCQCNLLPVDKLRINHYLGSIGDYMDNKRRYWKENYSLEEVNAKAADRDRNDETSDTIIHWACATREILARVVEGLDPRTGLPI 1284
            ++ P+ W  AGG+FGL++DW++A ++PG+  GE  +RG+ C+ D  Q QVR+IL RR +T  T KVAACVRTKD GR++ EWIAYHYA+GVD++ IYDDDS D T +IL+PF+DAGIV Y          Q+ PL   L++ +  RL DN AP+WL FHD+DEY+ P++T++T+ + L ++  TCC ++ RV YG+ G  E P GLLLE FL+HA   D K+NRLPK   NLD   P  G    RL+  H+ QGCQC+++PVD++RINHYLGS GDY+   +RYW+E YS ++V     +RD N   SDTI  WACATRE+L+ V+EG D    LP+
Sbjct:   73 SDEPYPWTGAGGKFGLTSDWREAAMMPGARGGEATMRGDSCMGDAKQRQVREILERRAKTPGTSKVAACVRTKDFGRFLPEWIAYHYAIGVDEMTIYDDDSNDDTVEILQPFVDAGIVTYILERTGHWENQMTPLNLCLEEHMVRRLGDNEAPRWLLFHDTDEYVVPVDTSVTIAQALDKHSATCCVRVPRVTYGAGGHDEMPQGLLLEVFLQHAHLHDFKSNRLPKVAVNLDTTQPLLGQARSRLKSMHNGQGCQCDVIPVDEIRINHYLGSRGDYLGKTKRYWQEVYSRDKVEKWLLERDINSFKSDTITTWACATREVLSVVLEGSDLNKVLPV 409

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BLAST of mRNA_H-paniculata_contig5158.12480.1 vs. uniprot
Match: A0A6H5KB75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB75_9PHAE)

HSP 1 Score: 341 bits (874), Expect = 6.480e-105
Identity = 174/341 (51.03%), Postives = 226/341 (66.28%), Query Frame = 1

Query:  298 EWENAGGEFGLSADWQKAVLLPGSGED--------IRGE-RCLSDENQEQVRQILARRDRTAAT-EKVAACVRTKDRGRYMSEWIAYHYALGVDDIYIYDDDSVDGTPDILKPFIDAGIVHYTFSHIAARRYQLRPLEGFLKQQIDARLE-DNTAPKWLAFHDSDEYIFPLNTTLTLPEVLQENDNTCCTQIHRVQYGSSGFSETPPGLLLETFLKHASPGDDKANRLPKFIANLDPAHPEEGMVTPRLRGPHSAQGCQC---NLLPVDKLRINHYLGSIGDYMDNKRRYWKENYSLEEVNAKAA-DRDRNDETSDTIIHWACATREILARVVEGLDPRTG 1275
            +W  AGGEFGLSADW++A+ +PG G+D        +RG   CL+++ Q +VR+IL +R   + T  +VA C+RTKD  R++ EWIA+HYALGVD+I IYDDDS D T ++L+PF++AGIV Y F  I  R  Q++PL   L+Q ++ R   D  A  W+ FHD+DEY++P +T+L + + L+++  TCC  + RVQYGS+G  E P GLLLE FL H+ PG    N LPK + NLDP+ PE G+V P LR  H+A+GC C       V  LRINHYLGSIGDYMD   RYW+E    E   AK    RD ND  SD I HWACATRE+L R+VEGLD   G
Sbjct:  148 QWRGAGGEFGLSADWREALSVPGGGDDEGAGAGEGLRGGGACLAEKKQAEVREILEKRGTASTTTNRVAVCLRTKDFARFLPEWIAFHYALGVDEIMIYDDDSTDNTKEVLRPFVEAGIVRYIFEVIFDRMTQMKPLNHCLEQHLERRSRGDEDAATWVLFHDTDEYLYPSDTSLNIRDALEKHHRTCCALVSRVQYGSAGHDEMPRGLLLENFLMHSHPGQQFGNGLPKVMVNLDPSEPELGVVEPPLRSMHNAEGCDCAGSKSSGVSNLRINHYLGSIGDYMDRTARYWEEKKQGEMAAAKTVLHRDINDYRSDDIEHWACATREVLFRIVEGLDLEKG 488

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BLAST of mRNA_H-paniculata_contig5158.12480.1 vs. uniprot
Match: D7FYE9_ECTSI (Glycosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYE9_ECTSI)

HSP 1 Score: 288 bits (738), Expect = 1.080e-87
Identity = 145/275 (52.73%), Postives = 183/275 (66.55%), Query Frame = 1

Query:  466 KVAACVRTKDRGRYMSEWIAYHYALGVDDIYIYDDDSVDGTPDILKPFIDAGIVHYTFSHIAARRYQLRPLEGFLKQQIDARLE-DNTAPKWLAFHDSDEYIFPLNTTLTLPEVLQENDNTCCTQIHRVQYGSSGFSETPPGLLLETFLKHASPGDDKANRLPKFIANLDPAHPEEGMVTPRLRGPHSAQGCQC---NLLPVDKLRINHYLGSIGDYMDNKRRYWKENYSLEEVNAKAA-DRDRNDETSDTIIHWACATREILARVVEGLDPRTG 1275
            KVA C+RTKD  R++ EWIA+HYALGVD+I+IYDDDS D T ++L PF++AGIV Y F  I  R  Q++PL   L+QQ++ R   D  A  W+ FHD+DEY++P +T+L + + L+++  TCC  + RVQYGS+G  E P GLLLE FL H+ PG    N L K + NLDP+ PE G+V P LR  H+A+GC C       V  LRINHYLGSIGDYMD   RYW+     E   AK    RD N+  SD I HWACATRE+L R+VEGLD   G
Sbjct:    2 KVAICLRTKDFARFLPEWIAFHYALGVDEIFIYDDDSTDNTEEVLWPFVEAGIVRYIFEVIFDRMTQMKPLNHCLEQQLERRSRGDEDAATWVLFHDTDEYLYPSDTSLNIRDALEKHHRTCCALVSRVQYGSAGHDEMPRGLLLENFLMHSHPGPQFGNGLAKVMVNLDPSEPEVGVVEPPLRSMHNAEGCDCAGSKFGGVSDLRINHYLGSIGDYMDRTTRYWEAKKKGEMAAAKTVLRRDINNYRSDDIEHWACATREVLFRIVEGLDLEGG 276

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BLAST of mRNA_H-paniculata_contig5158.12480.1 vs. uniprot
Match: D7FLX6_ECTSI (Glycosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLX6_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 5.820e-87
Identity = 158/377 (41.91%), Postives = 223/377 (59.15%), Query Frame = 1

Query:  175 QSVPYTVSHGHK-KSGSPYRVSRKLSDEDPQAPPGQATNAPWEWENAGGEFGLSADWQKAVLLPGSG---EDIRGERCLSDENQEQVRQILARRDRTAATEKVAACVRTKDRGRYMSEWIAYHYALGVDDIYIYDDDSVDGTPDILKPFIDAGIVHYTFSHIAARRYQLRPLEGFLKQQIDARLED-NTAPKWLAFHDSDEYIFPLNTTLTLPEVLQENDNTCCTQIHRVQYGSSGFSETPPGLLLETFLKHASPGDDKANRLPKFIANLDPAHPEEGMVTPRLRGPHSAQGCQCNLLPVDKLRINHYLGSIGDYMDNKRRYWKENYSLE-EVNAKAADRDRNDETSDTIIHWACATREILARVVEGLDPRTGLPIS 1287
            Q VP TV  G +  + SP     K SD+        +T  P  W+  GG FG+  DW+ A+   G       +RGE C++ EN+++V                A C+RTKD GR++ EW+A+HYA+GVD++ IYDD+SVD T ++LKPF+ AGIV Y F  I  R  Q+ PL   L+  I+ + +D   AP WL FHD+DEY++P +T++TL + L ++++TCC  + R+QYGS G  E P GL++++F+ H +     AN  PK + NL P   E   V P L+  H A+GC C  L  + L INHYLGS GDY++   RYW    + + +   + + RD ND  SDTI HW+C+TRE+L RV  GLD +TGLP S
Sbjct:   99 QGVP-TVELGEELPTQSPQSKDEKKSDD--------STEPPESWKGRGGPFGIDGDWRNALQEDGGDGAENGLRGEACMTHENRKEV----------------AVCLRTKDYGRFLPEWVAFHYAIGVDEVSIYDDNSVDQTSEVLKPFVSAGIVRYIFDMIPRRNAQMEPLNRCLRHYINRKKDDPENAPSWLLFHDNDEYVYPRDTSMTLFDALNKHESTCCALVRRIQYGSGGHDEMPRGLVMDSFMAHQNDSSHHAN--PKVVVNLTPT--ESDPVAPPLKSMHKAEGCACLDLKQEVL-INHYLGSRGDYLERVHRYWSTYMAGDNDPGHRLSQRDVNDRVSDTITHWSCSTREVLYRVDNGLDLQTGLPPS 445

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BLAST of mRNA_H-paniculata_contig5158.12480.1 vs. uniprot
Match: A0A6H5JE36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE36_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 4.020e-34
Identity = 76/179 (42.46%), Postives = 106/179 (59.22%), Query Frame = 1

Query:  463 EKVAACVRTKDRGRYMSEWIAYHYALGVDDIYIYDDDSVDGTPD----ILKPFIDAGIVHYTFSHIAARRYQLRPLEGFLKQQIDARLE--------DNTAPKWLAFHDSDEYIFPLNT-TLTLPEVLQENDNTCCTQIHRVQYGSSGFSETPPGLLLETFLKHASPGDDKANRLPKFI 960
            E+V +C RTKDRGRY+ EW+AYH+A+GVD++ I+DDDSVD T +    +L+PF+ AGIV +   HI  R     P    +    +            D  AP+W+   D+DEY++      + LPE L+    TCC Q+  VQ+G+SGFS++P GLLLE FL HA P   + N  PK +
Sbjct:  249 EQVVSCTRTKDRGRYLPEWVAYHWAMGVDEMNIFDDDSVDDTREARIFVLEPFVRAGIVKFQRRHIDPRNATSTPPSAAMPPLTECVESYRGMHDWGDRLAPRWVVLLDTDEYLWAREAGKIGLPEALEARSTTCCLQVSTVQHGTSGFSKSPRGLLLENFLTHADPTSPELNGPPKVL 427

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BLAST of mRNA_H-paniculata_contig5158.12480.1 vs. uniprot
Match: UPI00195DE65B (glycosyltransferase family 92 protein n=1 Tax=Bacteroides caecigallinarum TaxID=1411144 RepID=UPI00195DE65B)

HSP 1 Score: 106 bits (264), Expect = 1.480e-21
Identity = 61/167 (36.53%), Postives = 89/167 (53.29%), Query Frame = 1

Query:  469 VAACVRTKDRGRYMSEWIAYHYALGVDDIYIYDDDSVDGTPDILKPFIDAGIVHYTFSHIAARRYQLRPLEGFL-KQQIDARLEDNTAPKWLAFHDSDEYIFPLNTTLTLPEVLQENDNTCCTQIHRVQYGSSGFSETPPGLLLETFLKHASPGDDKANRLPKFIAN 966
            +A C   K+ G Y  EWI +H+ +GVD  Y+YD+DS D   ++L P+I++G+V YTF      + QL   +  L K + D R        W+AF D DE+I P+    T+PE L   +N    +++ + YGS G     PG ++E F  H+ PG    NR  K I N
Sbjct:   51 LAVCAIAKNEGPYFKEWIEWHHKMGVDKFYVYDNDSTDCIKEVLAPYIESGLVEYTF--FPGFKKQLAAYDDCLEKHRFDTR--------WIAFIDLDEFIVPIKDK-TIPEFLSRFENFPAVEVNWLIYGSGGAKTKQPGTMMERFKYHSLPGH-YLNRHVKSIVN 205

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BLAST of mRNA_H-paniculata_contig5158.12480.1 vs. uniprot
Match: A0A1V5F1F0_9BACT (Glycosyl transferase family 2 n=1 Tax=Bacteroidetes bacterium ADurb.BinA395 TaxID=1852820 RepID=A0A1V5F1F0_9BACT)

HSP 1 Score: 103 bits (256), Expect = 1.790e-20
Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = 1

Query:  445 DRTAATEKVAACVRTKDRGRYMSEWIAYHYALGVDDIYIYDDDSVDGTPDILKPFIDAGIVHYTFSHIAARRYQLRPLEGFLKQQIDARLEDNTAPKWLAFHDSDEYIFPLNTTLTLPEVLQENDNTCCTQIHRVQYGSSGFSETPPGLLLETFLKHASPGDDKANRLPKFIAN 966
            D+T  T  +A C   K+ G Y  EWI +H  LGV+  YIYD++SVD T  +L+ +ID+G+V YT+     +  QL   +  L++         T   W+AF D DE+I PL    ++P+ L++ ++    +I+ + YGS G  E   G +++ F  H+ P D   NR  K I N
Sbjct:   49 DKTTPTYYLAICAIAKNEGPYFKEWIEWHKKLGVEKFYIYDNESVDNTKQVLESYIDSGLVEYTY--FPGKLTQLLAYDDCLEKH-------RTDSHWIAFIDLDEFIVPLKDP-SIPDFLRKFESYAAVEINWLIYGSGGAKEKTEGNVMDRFKYHSRP-DHILNRHVKSIVN 211

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BLAST of mRNA_H-paniculata_contig5158.12480.1 vs. uniprot
Match: R5CAV1_9BACT (Uncharacterized protein n=1 Tax=Prevotella sp. CAG:1058 TaxID=1262918 RepID=R5CAV1_9BACT)

HSP 1 Score: 99.0 bits (245), Expect = 4.610e-19
Identity = 60/175 (34.29%), Postives = 93/175 (53.14%), Query Frame = 1

Query:  445 DRTAATEKVAACVRTKDRGRYMSEWIAYHYALGVDDIYIYDDDSVDGTPDILKPFIDAGIVHYTFSHIAARRYQLRPLEGFLKQ-QIDARLEDNTAPKWLAFHDSDEYIFPLNTTLTLPEVLQENDNTCCTQIHRVQYGSSGFSETPPGLLLETFLKHASPGDDKANRLPKFIAN 966
            D+T     +A C   K+ G Y  EW+ +H+  GVD  YIYD++S D T ++LKP+I++G+V Y +      R QL   +  L++ + D+R        W+AF D DE+I P+     +PE L   ++    +I+ + YGS G  +   G ++E F  HA+P     NR  K I N
Sbjct:   43 DKTQPKYYLAVCAIAKNEGPYFKEWVDWHHEQGVDKFYIYDNESTDCTKEVLKPYIESGLVEYIY--YPGYRRQLAAYDDCLERHRFDSR--------WIAFIDLDEFIVPVKDH-NIPEFLHRFESFPAVEINWLIYGSGGAKKKVQGTMMERFKHHATPSH-YLNRHVKSIVN 205

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BLAST of mRNA_H-paniculata_contig5158.12480.1 vs. uniprot
Match: A0A356L7D7_9PROT (Uncharacterized protein n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A356L7D7_9PROT)

HSP 1 Score: 98.6 bits (244), Expect = 1.020e-18
Identity = 79/226 (34.96%), Postives = 109/226 (48.23%), Query Frame = 1

Query:  490 KDRGRYMSEWIAYHYALGVDDIYIYDDDSVDGTPDILKPFIDAGIVHYTFSHIAARRYQLRPL--EGFLKQQIDARLEDNTAPKWLAFHDSDEYIFPL-NTTLT-----LPEVLQENDNTCCTQIHRVQYGSSGFSETPPGLLLETFLKHAS---PGDDKANRLPKFIANLDPAHPEE--GMVTPRLRGPHSAQGCQCNLLPV-DKLRINHYLG-SIGDYMDNKRR 1122
            KD G Y+ EW+ +H   GV+  Y+YD++S D T +ILKP+I+ GIV Y +      R Q  P+  +G  + + DAR        W+A  D DE++ P+ N T+T     LP   +E   T       V YGSSG    P GL++E F  HA    P   K+   P+FI      H  E  G V     G    +  Q N  P  +K+R NHY+  S  +YM    R
Sbjct:   71 KDEGAYLKEWLDFHILAGVEKFYLYDNESTDNTTEILKPYIERGIVEYKYW---PGRAQQNPVYWDGLNRHKNDAR--------WIAVIDLDEFVVPVQNKTITEFLHTLPRGARELVMTW------VMYGSSGHVHKPDGLVIENFRCHADRTRPAGCKSIVNPRFITRWANPHINEVAGFVVDE-NGKKLGRIDQTNNPPTYNKIRCNHYVTKSFDEYMSRGTR 278

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BLAST of mRNA_H-paniculata_contig5158.12480.1 vs. uniprot
Match: A0A2V1IQ63_9BACT (Uncharacterized protein n=7 Tax=Muribaculaceae TaxID=2005473 RepID=A0A2V1IQ63_9BACT)

HSP 1 Score: 96.7 bits (239), Expect = 2.760e-18
Identity = 56/177 (31.64%), Postives = 97/177 (54.80%), Query Frame = 1

Query:  439 RRDRTAATEKVAACVRTKDRGRYMSEWIAYHYALGVDDIYIYDDDSVDGTPDILKPFIDAGIVHYTFSHIAARRYQLRPLEGFL-KQQIDARLEDNTAPKWLAFHDSDEYIFPLNTTLTLPEVLQENDNTCCTQIHRVQYGSSGFSETPPGLLLETFLKHASPGDDKANRLPKFIAN 966
            +RD      ++A C   KD G Y  EW+ +H + GV+  YIYD++S D T ++L+P+I++G+V Y +      R Q+   +  + + + D R        WLAF D DE+I P+  + ++PE L+  +++   +I+ + YGS G  +  P  +++ F  H+ PG  + NR  K I +
Sbjct:   41 KRDHRKPDCRLAVCAIAKDEGPYFKEWLDWHISQGVEKFYIYDNESTDCTREVLRPYIESGVVEYCY--YPGYRRQIAAYDDCMDRHRFDTR--------WLAFIDLDEFIVPIADS-SIPEFLKRFEDSPAVEINWLIYGSGGAEKKSPDPVMQRFRHHSLPGH-RLNRHVKSIVD 205

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig5158.12480.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig5158.12480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KFX9_9PHAE	4.600e-113	51.34	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A6H5KB75_9PHAE	6.480e-105	51.03	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FYE9_ECTSI	1.080e-87	52.73	Glycosyltransferase n=1 Tax=Ectocarpus siliculosus...	[more]
D7FLX6_ECTSI	5.820e-87	41.91	Glycosyltransferase n=1 Tax=Ectocarpus siliculosus...	[more]
A0A6H5JE36_9PHAE	4.020e-34	42.46	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
UPI00195DE65B	1.480e-21	36.53	glycosyltransferase family 92 protein n=1 Tax=Bact...	[more]
A0A1V5F1F0_9BACT	1.790e-20	35.06	Glycosyl transferase family 2 n=1 Tax=Bacteroidete...	[more]
R5CAV1_9BACT	4.610e-19	34.29	Uncharacterized protein n=1 Tax=Prevotella sp. CAG...	[more]
A0A356L7D7_9PROT	1.020e-18	34.96	Uncharacterized protein n=2 Tax=Alphaproteobacteri...	[more]
A0A2V1IQ63_9BACT	2.760e-18	31.64	Uncharacterized protein n=7 Tax=Muribaculaceae Tax...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig5158	contig	H-paniculata_contig5158:6119..11785 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	99.4
Seed ortholog evalue	4.4e-18
Seed eggNOG ortholog	667015.Bacsa_2192
Hectar predicted targeting category	signal peptide
EggNOG free text desc.	Glycosyltransferase family 92
EggNOG OGs	2G2GR@200643,4NW1M@976,COG0463@1,COG0463@2
Ec32 ortholog description	Nucleotide-diphospho-sugar transferases
Ec32 ortholog	Ec-08_003790.1
COG Functional cat.	M
Best tax level	Bacteroidia
Best eggNOG OG	NA\|NA\|NA
Exons	8
Model size	2370
Cds size	1287
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig5158.12480.1	prot_H-paniculata_contig5158.12480.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig5158 6134..10717 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930507.47307-UTR-H-paniculata_contig5158:6118..6133	1622930507.47307-UTR-H-paniculata_contig5158:6118..6133	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig5158 6119..6133 +
1691481323.6633112-UTR-H-paniculata_contig5158:6118..6133	1691481323.6633112-UTR-H-paniculata_contig5158:6118..6133	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig5158 6119..6133 +
1622930507.6084404-UTR-H-paniculata_contig5158:10717..11785	1622930507.6084404-UTR-H-paniculata_contig5158:10717..11785	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig5158 10718..11785 +
1691481323.769736-UTR-H-paniculata_contig5158:10717..11785	1691481323.769736-UTR-H-paniculata_contig5158:10717..11785	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig5158 10718..11785 +

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig5158:6119..11785+
coding sequence from alignment at H-paniculata_contig5158:6119..11785+

protein sequence of mRNA_H-paniculata_contig5158.12480.1

>prot_H-paniculata_contig5158.12480.1 ID=prot_H-paniculata_contig5158.12480.1|Name=mRNA_H-paniculata_contig5158.12480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=429bp
MRTEHFQRSPGRFSSVMLMCASVCATTLLLLSSPAILTMGTVLREVMATV
SQIQSVPYTVSHGHKKSGSPYRVSRKLSDEDPQAPPGQATNAPWEWENAG
GEFGLSADWQKAVLLPGSGEDIRGERCLSDENQEQVRQILARRDRTAATE
KVAACVRTKDRGRYMSEWIAYHYALGVDDIYIYDDDSVDGTPDILKPFID
AGIVHYTFSHIAARRYQLRPLEGFLKQQIDARLEDNTAPKWLAFHDSDEY
IFPLNTTLTLPEVLQENDNTCCTQIHRVQYGSSGFSETPPGLLLETFLKH
ASPGDDKANRLPKFIANLDPAHPEEGMVTPRLRGPHSAQGCQCNLLPVDK
LRINHYLGSIGDYMDNKRRYWKENYSLEEVNAKAADRDRNDETSDTIIHW
ACATREILARVVEGLDPRTGLPISPKRS*

mRNA from alignment at H-paniculata_contig5158:6119..11785+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig5158.12480.1 ID=mRNA_H-paniculata_contig5158.12480.1|Name=mRNA_H-paniculata_contig5158.12480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5667bp|location=Sequence derived from alignment at H-paniculata_contig5158:6119..11785+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAAAAAATAAAGAATGAGGACTGAGCACTTCCAAAGGAGCCCTGGGCG
CTTCTCGTCTGTAATGCTCATGTGTGCATCGGTGTGTGCTACAACATTGT
TACTCCTCTCGAGTCCAGCGATTCTCACCATGGGGACTGTGCTACGTGAG
GTGATGGCCACGGTGTCACAAATGTGGGTATTGTTGTCAAGGTTTGTGAT
TGTTTTCCGGATGGATGGTAATCAGTCGATAATCTGGGGTCCTCGGAGTA
ACGGTGGATGTATCAAAACGGAGGCTGGGGGGGTGTCAGGAGTGCTGAAT
GTGGGCTCGTGGGCTCGCTAAATGGCTCTTTTAGAAAGAATAAAATACGG
TACATTTCCAGGAAATGCAGTTCTCTCTGTCTTCTATAGCGTCGTCTGAA
ACCTGCCCTTTTTCATGAACAGTTTCATTACCAGTAATGAATGAAATGGT
CTTCTGTCTTCTTATCCGGATTTTTTCAGTGCTTAGTTGGTTTCGCTCGT
TCATCGTGTTTAACCTAGTAGACGGACTTCGTCACGGCCAAAATATAGAT
TTTTAATTATTGACGTCTTGTGAAAAAATGGTGAAGATGTCAAAATAATG
CCTTAGCAGCAGCTCTAGAAAGCTGTTTAGCACATTTCAGCTGCCAAAGA
GGGTCGTGTCCTCGCTGTTTGGGGACTTTTATAGTCGATTTAGTTCTGGC
GGAGAACATTCAAAATCATTTTTTTTTCGTAACTGGCAAATAGTAACAAA
CAAGGACTCCATGGCGAATTAAGGGGTCTGAAGCTTCTAAGGGATGAAGC
ACTTTAATTGTTCCTCGTTCATCGTTTCAGCTCCAGAAAGTCAATATTTA
TCCTCATCATTTTTTCCTCACCTCTGCCCGTGTCTTCAGTCAATCTGTGC
CATACACAGTTTCCCATGGACACAAGAAGTCTGGTTCACCGTATCGAGTG
TCGAGAAAACTTTCAGACGAGGACCCCCAAGCCCCGCCAGGGCAGGCAAC
AAATGCACCCTGGGAATGGGAGAATGCAGGAGGAGAGTTTGGGCTTTCGG
CTGACTGGCAGAAGGCCGTACTGCTACCGGGGTCCGGGGAGGATATTCGG
GGAGAGCGGTGCTTGAGTGACGAGAATCAAGAACAAGTACGGCAAATATT
GGCGAGGAGAGACAGAACTGCCGCAACAGAGAAGGTATAATGTCGACGTC
ATGTTATAGCTATCCTGGTTTTTCCACTTCGCCCTCAAGATGGATAACGG
TAGGGGGGGTAATTTGAGCTTATTTGTCCCCATTTTTGAGCCGATTTGCG
AAGCGGATAGGCAATATTTATATATCTATCTATATATATATATATATAGA
TATATGTATTCCTTTTAACAGTACTACCGTTTTGAATCTTGTACTATGAA
CCCTTGGGGGTACCTGAATGCATGCCGTTAAAGAGGTTTTGATTTGAGTC
TTTTTTAGCCGATTCGCGAATCGGCACTGGTTGATCATTTTTACCCCGCC
CCTACCGTAGCCGTACTCCCTTTGTTCCCTCCTCTGAACAGGCTGCTCCA
CCCCCGTCCTTTCGTGTCCCACACGCCGCACCACCCTTTCAAGGTTGCCG
CGTGTGTCCGCACGAAGGACCGTGGCCGGTATATGTCAGAATGGATAGCC
TATCACTACGCGCTGGGAGTGGACGATATTTATATATATGACGACGACAG
CGTGGACGGCACACCAGATATCCTGAAGCCCTTCATAGATGCCGGGATAG
TGCACTACACATTCTCCCATATTGCTGCGTGAGCGATTTAAAGAGTCTGA
GTAAATAGACGGAGGAAAAATACCACTTTGGTATGAAGATGTTGCGTTGT
GTGGTGTGGGATGTGCAAGCTGCCCGTTCTCCTAGGTATGTGTTCTCTAG
GATCACGTGTATTGTGAGAGAGTTGCAATATATTTTGCGGCGGTGGTTTT
TACAGTTCATAACCTGCGTCTTGATCAGTCGTCTCCCGACGATCGTTAAG
TACGACCCCGTGCGGCCACCAACCTTCCATACCGAGATTGAACAGCCCCC
TCGCACGTCAAGCATTTGCGTTGTACTTGAACATTTACACCAAATATCTA
CTTAACCGAGGTGCCGCGGAAGCGCGCTGAACGCTGAGCTTGCTTCAGCT
CCCCAGAATTTCCCCACAACATGGCAGCGTATGTCCCGACCGCGATCCGT
ACGACCAAACGGATAAGTGTAAGTACATCAGCGAGATATGTAAGGTTGTT
GCTTTGTTGTTTCCCTCAGCGGATAATCAATTAATTTTGCCTTCTTGGTT
TGTCGATAGCTCGGGTGGTGTAATTCATGTCGGCCTTGGAACGATGTATT
TTACTTCGTTGTGCCACGCGAACCCTCCCCGTTGTGGGTGGATTTCGTCC
TTAATATCCATTAGCCTTAGCCCCGAAACTCCTGCCTCTTCGTTTTACTT
TGCCAGGCGACGGTATCAGCTGAGGCCACTTGAAGGCTTTCTGAAGCAGC
AAATCGATGCCAGGCTGGAAGACAACACTGCGCCAAAGTGGCTGGCTTTT
CACGATTCTGACGAGTACATCTTCCCCCTCAACACTACCCTCACATTGCC
AGAGGTTTTGCAGGAGAATGACAACACTTGCTGTACACAGGCAAGGTGGC
GGAACGGCGCACTATTCAAAGTAGCATTTGTATAGCTTGTAGATTGTAGC
TGTGTCAGCAGTCGAATGTTTAGGAGCTACCTTTGCTTTGCTCAAGGAAC
CTACCGCAGTACGCTTGATAAGCTTTTTGAACATAGGATTGATTGGTGGG
AGTGTAGAATAACCTCTTTGCCCGAGAGTGTTGACGAAATCTAATCCCAA
TATCGAAGTAAGCAAAACGGCATAGAGCACGTTATTTTCAACGCCACTCG
GACTCGAGACGATGCTCTTACGACGTCAGTGTTAGTTTTTGATAGTGCAT
AGGGAGGGAGCATAGGAGGAGGCGTTTTTATAACAATTCTTCTTCCTGTC
TTGCGGAAAAAGCACGAAGTTATTCTTTGCTGTACCTGACCCATTGAAAT
TTTCTGTGCTGCGATGCTTGGAACAGATACACCGCGTGCAGTACGGAAGT
TCAGGTTTCAGCGAGACCCCTCCTGGGCTGCTCCTGGAGACGTTTCTTAA
ACACGCGTCGCCCGGTGATGATAAGGCTAACCGATTGCCGAAGGTGAGAT
GACATATCTCTCTTGCACGGTTTCGATCGACTACGCTCGCTTTTGAACTC
GGCCGGTGGCATGGGGGAAGTTCGCTGGACAAATGAGCCGGGCACATATA
TAAAGGGCCCCTGCTGCTTTTATGGTTTCTCCCTCGCTGCCTACTGCGCT
ACAAAATCTAGTTTGAGCATATTCTCAACCGGTATTAGTGTAGAGGTTTT
TTTTTTCAGGGTGCCGCGCGTCTTGTGGTCGATCTGATTCTCTTGCATGG
AAACTGTACGAGCGCCGGAAGGTGCTGGAATTAACAGCGGGGAAAATTTT
ATTCGACAGCGACAGCACATGAATACTACCCAATACTTTAGGCGTGAAAT
GGGTAGCATTACAAGGATTTTCCTTCATCCTCCTGCGTTACCGACAGTAC
GGCGGGATGAATGTTTGATAAATTGCCAAGTCAAACCCTCTTCCCATTTT
TATTTTCTCCGTTCTATTGTGTGCAGTTTATCGCCAATTTGGATCCGGCG
CACCCAGAGGAGGGGATGGTGACGCCGCGCCTGCGGGGGCCGCATAGTGC
CCAAGGGTGCCAGTGCAACCTGCTGCCTGTCGACAAGCTACGTATTAATC
ACTATCTCGGTTCGATTGGGGACTACATGGACAACAAACGACGATATTGG
AAGGTGAAGTCATGAGAATAATTTACCAGGGTACATGTGCTACCCACGGT
CTCAACGACCAAGGTGTCCGTCCCTTGGAGGTTATTTTTTTACTGCTTGT
CAACATGTGATACCTTTAAATTGCCATGCATGTGCCCGCATGCTGCTTCA
TATAGTATTTTGGTTGTCCGTTGACTCGCAATGGCGACACACGTGACTTG
ATGTTGGTATTGTTTCGGCGGCGGACGCATTTGATTATCTCTCATTTCGG
CTATGTTTCATTCCGCCCATTATCCAAACGTCTCGTCAACCTGCGCGCAT
ATTTGTGTGTGTCTTGATACTATGTAGGAAAACTACAGCCTAGAGGAGGT
GAATGCCAAGGCAGCTGATCGAGACAGGAACGATGAAACCAGTGACACCA
TTATCCACTGGGCGTGCGCCACCCGAGAAATCCTTGCGAGGGTCGTGGAA
GGATTGGATCCACGCACGGGACTGCCAATCTCGCCAAAGCGATGTGCGTA
TGTTGTGTATCTGTTTCCCTCCGGCGTGTCGCTTGTTCCTGGTAGAGTTA
TGGCATGCTCAGGCATATGTGCGTTGGGTAAAGTGCGAGAGTCGAAGGGA
CGTGATCGGGCGTTAATAACGTGCGCTTTTGCGACGCAGGAGGACCGATC
CGAAGTTGGTTACCACCTCACCCCTGGCTGCAACACGACCTGATTAGTTT
TCCGCTGACAACCGTGCTTGTGTGCTTTTCTCGTTTCGCGCCAGCCTAAC
ATCTAGGCGCCCAACAATGAATGCTGTTCACCGAAGAGTGGCAGGATGCT
CCAGGAAAGAAGGGAGGGCGGGGACATCAACACGCGGTCCCTTGCCTCCC
CCGTCGCCATAGTTGGATAGTTGAGGTGTGCACGAGGCACTACACAAGTG
ACTACTTGCTTGGGATCCAAGATATTCCCAAAAACGTGTACATGAACTTT
GTTAGATAAGTAATGTGCAATCGTCCAAAATAATCCTGTGAGTCCTGGGG
ATCTGAGTTGCAACATTTTGTGACGCTCAAAATTTCGCAGTTTCGTTACG
CAAGATTAATGTGGCTATGTGAAATCAGTCCAGCTGTACTCAGATTTCAA
TAAGTTGATAGATAGTATGTAGAGATTTAGTGCAACACGTTGCGACGCTG
AGAAATTCGACTTGCTTTTTGTTTCAAACAACTGAAGTTCGTCACGGGTT
AGCTCTACGGCAGCCGGAACTTTGTTTGTGCTTGATGTGCAGGTGACGTT
AAATTTTGCGGTTGACGTAACTTCATAGTATCAAAAATTGATGTCACATC
CGCGATGTCACGAAAGGTTTGCCAACAAATCGTGAGCAAAACTCCGCGTC
TCTAATATTGAGAAATTGGTGTATAAACCAAAAGCACGTGAGCTATTCAT
AGATCGAGATCGGTTGAACACGGAAAGGGTAAAGAGTTCCTGTGATATAC
CGCGGTGTAATGGTTTCTAGAATTACAGGGTACCGATTTCGTGTACTACT
ACACAGAGTAAATGGTGTCTCACTGGGTGACAGAGGTTGCAGAATGGCGG
GGTAAAATAGTTCAAAGTACGGGGGAGTATCCTACAGATGGAATATCGAC
GCAAACAAACCTTACTACCCTCACAGTAACTGAAAAAGGGTCAGGTGATT
GGGATCGAGAGAGAAGTTCATTAATGGGATAAAAGATGTGATAATGCTGT
GAATTTTGAATTTTGAATTGTGCCAGTTGGGAAGGTCCTATCCACCTGAG
TTCACTTCGAACCAGATCTTCAACAAACCACCAATATTGGGATCAATAAT
TAATAACAGGAAAAAAT

Coding sequence (CDS) from alignment at H-paniculata_contig5158:6119..11785+

>mRNA_H-paniculata_contig5158.12480.1 ID=mRNA_H-paniculata_contig5158.12480.1|Name=mRNA_H-paniculata_contig5158.12480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2574bp|location=Sequence derived from alignment at H-paniculata_contig5158:6119..11785+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGACTGAGCACTTCCAAAGGAGCCCTGGGCGCTTCTCGTCTGTAAT
GCTCATGTGTGCATCGGTGTGTGCTACAACATTGTTACTCCTCTCGAGTC
CAGCGATTCTCACCATGGGGACTGTGCTACGTGAGGTGATGGCCACGGTG
TCACAAATATGAGGACTGAGCACTTCCAAAGGAGCCCTGGGCGCTTCTCG
TCTGTAATGCTCATGTGTGCATCGGTGTGTGCTACAACATTGTTACTCCT
CTCGAGTCCAGCGATTCTCACCATGGGGACTGTGCTACGTGAGGTGATGG
CCACGGTGTCACAAATTCAATCTGTGCCATACACAGTTTCCCATGGACAC
AAGAAGTCTGGTTCACCGTATCGAGTGTCGAGAAAACTTTCAGACGAGGA
CCCCCAAGCCCCGCCAGGGCAGGCAACAAATGCACCCTGGGAATGGGAGA
ATGCAGGAGGAGAGTTTGGGCTTTCGGCTGACTGGCAGAAGGCCGTACTG
CTACCGGGGTCCGGGGAGGATATTCGGGGAGAGCGGTGCTTGAGTGACGA
GAATCAAGAACAAGTACGGCAAATATTGGCGAGGAGAGACAGAACTGCCG
CAACAGAGAAGTCAATCTGTGCCATACACAGTTTCCCATGGACACAAGAA
GTCTGGTTCACCGTATCGAGTGTCGAGAAAACTTTCAGACGAGGACCCCC
AAGCCCCGCCAGGGCAGGCAACAAATGCACCCTGGGAATGGGAGAATGCA
GGAGGAGAGTTTGGGCTTTCGGCTGACTGGCAGAAGGCCGTACTGCTACC
GGGGTCCGGGGAGGATATTCGGGGAGAGCGGTGCTTGAGTGACGAGAATC
AAGAACAAGTACGGCAAATATTGGCGAGGAGAGACAGAACTGCCGCAACA
GAGAAGGTTGCCGCGTGTGTCCGCACGAAGGACCGTGGCCGGTATATGTC
AGAATGGATAGCCTATCACTACGCGCTGGGAGTGGACGATATTTATATAT
ATGACGACGACAGCGTGGACGGCACACCAGATATCCTGAAGCCCTTCATA
GATGCCGGGATAGTGCACTACACATTCTCCCATATTGCTGCGTTGCCGCG
TGTGTCCGCACGAAGGACCGTGGCCGGTATATGTCAGAATGGATAGCCTA
TCACTACGCGCTGGGAGTGGACGATATTTATATATATGACGACGACAGCG
TGGACGGCACACCAGATATCCTGAAGCCCTTCATAGATGCCGGGATAGTG
CACTACACATTCTCCCATATTGCTGCGCGACGGTATCAGCTGAGGCCACT
TGAAGGCTTTCTGAAGCAGCAAATCGATGCCAGGCTGGAAGACAACACTG
CGCCAAAGTGGCTGGCTTTTCACGATTCTGACGAGTACATCTTCCCCCTC
AACACTACCCTCACATTGCCAGAGGTTTTGCAGGAGAATGACAACACTTG
CTGTACACAGGCGACGGTATCAGCTGAGGCCACTTGAAGGCTTTCTGAAG
CAGCAAATCGATGCCAGGCTGGAAGACAACACTGCGCCAAAGTGGCTGGC
TTTTCACGATTCTGACGAGTACATCTTCCCCCTCAACACTACCCTCACAT
TGCCAGAGGTTTTGCAGGAGAATGACAACACTTGCTGTACACAGATACAC
CGCGTGCAGTACGGAAGTTCAGGTTTCAGCGAGACCCCTCCTGGGCTGCT
CCTGGAGACGTTTCTTAAACACGCGTCGCCCGGTGATGATAAGGCTAACC
GATTGCCGAAGATACACCGCGTGCAGTACGGAAGTTCAGGTTTCAGCGAG
ACCCCTCCTGGGCTGCTCCTGGAGACGTTTCTTAAACACGCGTCGCCCGG
TGATGATAAGGCTAACCGATTGCCGAAGTTTATCGCCAATTTGGATCCGG
CGCACCCAGAGGAGGGGATGGTGACGCCGCGCCTGCGGGGGCCGCATAGT
GCCCAAGGGTGCCAGTGCAACCTGCTGCCTGTCGACAAGCTACGTATTAA
TCACTATCTCGGTTCGATTGGGGACTACATGGACAACAAACGACGATATT
GGAAGTTTATCGCCAATTTGGATCCGGCGCACCCAGAGGAGGGGATGGTG
ACGCCGCGCCTGCGGGGGCCGCATAGTGCCCAAGGGTGCCAGTGCAACCT
GCTGCCTGTCGACAAGCTACGTATTAATCACTATCTCGGTTCGATTGGGG
ACTACATGGACAACAAACGACGATATTGGAAGGAAAACTACAGCCTAGAG
GAGGTGAATGCCAAGGCAGCTGATCGAGACAGGAACGATGAAACCAGTGA
CACCATTATCCACTGGGCGTGCGCCACCCGAGAAATCCTTGCGAGGGTCG
TGGAAGGATTGGATCCACGCACGGGACTGCCAATCTCGCCAAAGCGATGA
AAACTACAGCCTAGAGGAGGTGAATGCCAAGGCAGCTGATCGAGACAGGA
ACGATGAAACCAGTGACACCATTATCCACTGGGCGTGCGCCACCCGAGAA
ATCCTTGCGAGGGTCGTGGAAGGATTGGATCCACGCACGGGACTGCCAAT
CTCGCCAAAGCGATCCTAACCTAA