mRNA_H-paniculata_contig5156.12479.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5156.12479.1
Unique NamemRNA_H-paniculata_contig5156.12479.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5156.12479.1 vs. uniprot
Match: A0A6H5K453_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K453_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.360e-8
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 1 
Query: 1501 CPLLR-EREMVLCE*SGEN*SIR*RDVWKSWDCDKKAMVVLGDGNWPEHAR---VEAYRSGKTCLSHVWRSRKERLAIIGSRPGGNIGPSSQ 1764
            CPL + ERE+ + E    + + R  +++++W+ +++ + VLG   W E A    V   R GKT LSH+W+SRKERLAI G R  GN  PSS+
Sbjct:   93 CPLYKKEREVYVTELGKIDGTYR--EMFEAWNREERTVAVLGHRRWAEKAGRDIVRIGRLGKTFLSHLWQSRKERLAI-GDRSCGNNAPSSR 181
[Close]
BLAST of mRNA_H-paniculata_contig5156.12479.1 vs. uniprot
Match: A0A6H5JMW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW7_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 4.180e-8
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 1 
Query: 1501 CPLLR-EREMVLCE*S---GEN*SIR*RDVWKSWDCDKKAMVVLGDGNWPEHA---RVEAYRSGKTCLSHVWRSRKERLAIIGSRPGGNIGPSSQ 1764
            CPL + ERE+ + E     G N     R+++++W+ +++ + VLG G W E A    V   R GKT LSH+W+SRKERLAI G R  GN  PSS+
Sbjct:  292 CPLYKKEREVYVTELGKIDGTN-----REIFEAWNREERTVDVLGHGRWVEQAGRGTVRKGRLGKTFLSHLWQSRKERLAI-GDRCCGNNAPSSR 380
[Close]
BLAST of mRNA_H-paniculata_contig5156.12479.1 vs. uniprot
Match: A0A6H5K7G9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7G9_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.330e-7
Identity = 39/98 (39.80%), Postives = 59/98 (60.20%), Query Frame = 1 
Query: 1501 CPLLR-EREMVLCE*SGEN*SIR*RDVWKSWDCDKKAMVVLGDGNWPEHAR---VEAYRSGKTCLSHVWRSRKERLAIIGSRPGGNIGPSSQDVWAMV 1782
            CPL + ERE+ + E    + + R  +++++W+ +++ +  LG   W E AR   V   R GKT LSH+W+SRKERLAI G  P G +    +D W+MV
Sbjct:  674 CPLYKKEREVYVTELGKIDATYR--EMFEAWNREERTIAALGHRWWVEKARGDIVRIDRLGKTFLSHLWQSRKERLAI-GDGPVGTMLRPLEDAWSMV 768
[Close]
BLAST of mRNA_H-paniculata_contig5156.12479.1 vs. uniprot
Match: A0A6H5JCQ0_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ0_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.430e-7
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 1 
Query: 1501 CPLLR-EREMVLCE*SGEN*SIR*RDVWKSWDCDKKAMVVLGDGNWPEHAR---VEAYRSGKTCLSHVWRSRKERLAIIGSRPGGNIGPSSQ 1764
            CPL + ERE+ + E    + + R  +++++W+ +++ + VLG   W E A    V   R GKT LSH+W+SRKERLAI G R  GN  PSS+
Sbjct:  161 CPLYKKEREVYVTELGKIDGTYR--EMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAI-GDRSCGNNAPSSR 249
[Close]
BLAST of mRNA_H-paniculata_contig5156.12479.1 vs. uniprot
Match: A0A6H5K5X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X1_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.610e-7
Identity = 44/119 (36.97%), Postives = 65/119 (54.62%), Query Frame = 1 
Query: 1501 CPLLR-EREMVLCE*SGEN*SIR*RDVWKSWDCDKKAMVVLGDGNWPEHAR---VEAYRSGKTCLSHVWRSRKERLAIIGSRPGGNIGPSSQDVWAMVKRNYAPSPPSNTHDHTPSGAH 1845
            CPL + ERE+ + E    + + R  +++++W+ +++ + VLG   W E A    V   R GKT LSH+W+SRKERLAI G R  GN  PSS+    + +  Y        H H   G+H
Sbjct:  438 CPLYKKEREVYVTELGKIDGTYR--EMFEAWNREERTVAVLGYSKWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAI-GDRSCGNNAPSSRGRVDIEEHRYG-------HMHQGLGSH 546
[Close]
BLAST of mRNA_H-paniculata_contig5156.12479.1 vs. uniprot
Match: A0A6H5J590_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J590_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.940e-7
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 1 
Query: 1501 CPLLR-EREMVLCE*SGEN*SIR*RDVWKSWDCDKKAMVVLGDGNWPEHAR---VEAYRSGKTCLSHVWRSRKERLAIIGSRPGGNIGPSSQ 1764
            CPL + ERE+ + E    + + R  +++++W+ +++ + VLG   W E A    V   R GKT LSH+W+SRKERLAI G R  GN  PSS+
Sbjct:  270 CPLYKKERELYMTELGKIDGTYR--EMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAI-GDRSCGNNAPSSR 358
[Close]
BLAST of mRNA_H-paniculata_contig5156.12479.1 vs. uniprot
Match: A0A6H5L9S2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9S2_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.970e-7
Identity = 36/98 (36.73%), Postives = 57/98 (58.16%), Query Frame = 1 
Query: 1501 CPLLR-EREMVLCE*SGEN*SIR*RDVWKSWDCDKKAMVVLGDGNWPEHAR---VEAYRSGKTCLSHVWRSRKERLAIIGSRPGGNIGPSSQDVWAMV 1782
            CPL + ERE+ + E    + + R  +++++W+ +++ + V+G   W E A    V   R GKT LSH+W+SRKERLAI     G  +    +D W+MV
Sbjct:  155 CPLYKKEREVYVTELGKIDGTYR--EMFEAWNREERTVAVVGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGRTMLRPLEDAWSMV 250
[Close]
BLAST of mRNA_H-paniculata_contig5156.12479.1 vs. uniprot
Match: A0A6H5JLM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 4.320e-7
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 1 
Query: 1501 CPLLR-EREMVLCE*SGEN*SIR*RDVWKSWDCDKKAMVVLGDGNWPEHAR---VEAYRSGKTCLSHVWRSRKERLAIIGSRPGGNIGPSSQ 1764
            CPL + ERE+ + E    + + R  +++++W+ +++ + VLG   W E A    V   R GKT LSH+W+SRKERLAI G R  GN  PSS+
Sbjct:  287 CPLYKKEREVYVTELGKIDGTYR--EMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAI-GDRSCGNNAPSSR 375
[Close]
BLAST of mRNA_H-paniculata_contig5156.12479.1 vs. uniprot
Match: A0A6H5LRL5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRL5_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 5.150e-7
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 1 
Query: 1501 CPLLR-EREMVLCE*SGEN*SIR*RDVWKSWDCDKKAMVVLGDGNWPEHAR---VEAYRSGKTCLSHVWRSRKERLAIIGSRPGGNIGPSSQ 1764
            CPL + ERE+ + E    + + R  +++++W+ +++ + VLG   W E A    V   R GKT LSH+W+SRKERLAI G R  GN  PSS+
Sbjct:  345 CPLYKKEREVYVTELGKIDGTYR--EMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAI-GDRSCGNNAPSSR 433
[Close]
BLAST of mRNA_H-paniculata_contig5156.12479.1 vs. uniprot
Match: A0A6H5KVX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX2_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 5.150e-7
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 1 
Query: 1501 CPLLR-EREMVLCE*SGEN*SIR*RDVWKSWDCDKKAMVVLGDGNWPEHAR---VEAYRSGKTCLSHVWRSRKERLAIIGSRPGGNIGPSSQ 1764
            CPL + ERE+ + E    + + R  +++++W+ +++ + VLG   W E A    V   R GKT LSH+W+SRKERLAI G R  GN  PSS+
Sbjct:  396 CPLYKKEREVYVTELGKIDGTYR--EMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAI-GDRSCGNNAPSSR 484
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5156.12479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K453_9PHAE3.360e-842.39Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JMW7_9PHAE4.180e-844.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7G9_9PHAE1.330e-739.80Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCQ0_9PHAE1.430e-742.39Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5X1_9PHAE1.610e-736.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J590_9PHAE1.940e-742.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L9S2_9PHAE2.970e-736.73Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLM8_9PHAE4.320e-742.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LRL5_9PHAE5.150e-742.39Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KVX2_9PHAE5.150e-742.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5156contigH-paniculata_contig5156:3603..9327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1858
Cds size1335
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5156.12479.1prot_H-paniculata_contig5156.12479.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5156 5781..9011 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930507.3461409-UTR-H-paniculata_contig5156:3602..38021622930507.3461409-UTR-H-paniculata_contig5156:3602..3802Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5156 3603..3802 +
1691481323.594148-UTR-H-paniculata_contig5156:3602..38021691481323.594148-UTR-H-paniculata_contig5156:3602..3802Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5156 3603..3802 +
1622930507.3590517-UTR-H-paniculata_contig5156:5773..57801622930507.3590517-UTR-H-paniculata_contig5156:5773..5780Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5156 5774..5780 +
1691481323.608928-UTR-H-paniculata_contig5156:5773..57801691481323.608928-UTR-H-paniculata_contig5156:5773..5780Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5156 5774..5780 +
1622930507.4211965-UTR-H-paniculata_contig5156:9011..93271622930507.4211965-UTR-H-paniculata_contig5156:9011..9327Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5156 9012..9327 +
1691481323.6517792-UTR-H-paniculata_contig5156:9011..93271691481323.6517792-UTR-H-paniculata_contig5156:9011..9327Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5156 9012..9327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930507.3727834-CDS-H-paniculata_contig5156:5780..58671622930507.3727834-CDS-H-paniculata_contig5156:5780..5867Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5156 5781..5867 +
1691481323.6197786-CDS-H-paniculata_contig5156:5780..58671691481323.6197786-CDS-H-paniculata_contig5156:5780..5867Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5156 5781..5867 +
1622930507.3856575-CDS-H-paniculata_contig5156:7507..86471622930507.3856575-CDS-H-paniculata_contig5156:7507..8647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5156 7508..8647 +
1691481323.6309097-CDS-H-paniculata_contig5156:7507..86471691481323.6309097-CDS-H-paniculata_contig5156:7507..8647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5156 7508..8647 +
1622930507.4016616-CDS-H-paniculata_contig5156:8903..90111622930507.4016616-CDS-H-paniculata_contig5156:8903..9011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5156 8904..9011 +
1691481323.6414135-CDS-H-paniculata_contig5156:8903..90111691481323.6414135-CDS-H-paniculata_contig5156:8903..9011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5156 8904..9011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5156.12479.1

>prot_H-paniculata_contig5156.12479.1 ID=prot_H-paniculata_contig5156.12479.1|Name=mRNA_H-paniculata_contig5156.12479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=445bp
MTSGDFTNSNGGRFGLGVGFALSPELAQKVREGQRLCPAPAVNSSGLTFL
KGAAVAATATTTPATHGKSCNTAPAQGASATSNGASATSNGANADDFVVD
GSLPNGYVVDRPGTLSSSDSASNHDAGIGSRSLGVELADGGEGLLRENES
GVGSNDQLLSSNVQPVSPATEADQMMRVHAESDQHVGIGAAPVHCSTATE
DPSKLEKGRNNSSSDAVDDGAERKSATSLSNAYELRSVKDPSPAAMEDND
SGRDEGIRLDNEQDTAALVISTNSEKQTRTIEHSVPAQDNFEAPDNWEDL
DDDTSAPLDALSVTRTDDTASALPNAALTPKHAAGDMEIPPVEAFSPSPA
VESREDPGSGRGSQGGNSGRNKQQDGEERFVDVGELEGGQAGRRHFEGRE
AAAERPIVAARCSSVTAVVRARTGCIRLGNACPLLREREMVLCE*
back to top

mRNA from alignment at H-paniculata_contig5156:3603..9327+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5156.12479.1 ID=mRNA_H-paniculata_contig5156.12479.1|Name=mRNA_H-paniculata_contig5156.12479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5725bp|location=Sequence derived from alignment at H-paniculata_contig5156:3603..9327+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGTTCAGAGGTGTATTGCGGTTTGGTTCCCCCCCGCTCCACGTAGAAG
AGAATACTGTATTGCTGCATCTCTGGCTGTATGATATGGCGCAGTCTTCA
GGTTGTTGTGTCTGGGTAGTGTTGTCCCGGTCGTAGAGTCGGGGTTGCTT
GGTTGGTGCCGCTTCAAGCACAACGAGAACTATCTGGGGAAGAATCACAG
GTAGATGGTTGCACGAGGTGAAGGGGGACGTCAGATGCTCATCTTGTTGC
AAGTTTCTCAGAGTATTTACCCTGGGGGGACTCTACAGCTGCCTGTCAAA
CGATACCTTCTTGCGGCGTAGTCTTCGCCAATCGCGGTGAAGGGGCTGCC
GGATGTTGGGTTGTTGTCGACAAGTTTCAAAACCGGCCCAAGGGATGCAC
TGGTTGCAAAAGCTTCCACGAGGATTATTTTTAGGCTAATCTTATCCTAG
GCAGTCTTGACGAGGGTGGTCTGTTGTGTGTCATGTGAAAATGTCGAGCG
CTGCAGTCCTTTAGGGCAAAACACGCCAACTCCCCATCTGTCCTCTAATG
TACATATCTGAACAGCGCCAGCTCCCTATCCCTGCAACCCCTGCAATCGC
GTTAGATCGGCGTTGTTTTCGTCGTTGGGGTAAAGATTAGATGTGGCCTG
GGAGTAAATGGGTTGGTAATAAGCGAGGTTCTAACTTCTAAACATAAATT
GAGATTTTTGAAACGCATTTTGGTGGCTACACGTTCGTGTAAACTGGGAC
TATCACTTGCACCAGAGGATGTGATACTCTTCTAGTCTTTATCCATCGAT
TCACAGAAGAGAATAAACAATGCCGTGTTTGCCTGTTCATCTGTTGGCAT
CCGTCTCTCACAAGAAGGGGGGGGGGGGGGTACTTATCTTTGTATGCCAC
AATTATTGGACCATTGACCATGCGTCCCCGATACGACGAAACTTTCTTGT
ATAGGAGCGATTTTTGACGGCCAATCGGTCTCTCCTATGTTGTCACATAT
GACCCAAGACACTTTTACCTATATCTGCCTCAACCCTCGCCTTTTCAGGT
TAATTTCTATTTCCCAGATATCCTCTCTTACAGAGGGAGGAAGATAATAG
ATGGACCTCCACAACGGTGATCTTTATGGTCAACGCACGGTAGCGCTTAT
CCATTTTTTGTTCACACTCCTGGAACCCCTAGGAGTCGAGATTCCGCAAC
TCCGACGACGTCTGGATATGGTAAACGGATCCTCAAATAGCGTGGGCCAA
GAGTGAAAAGAGTTAAGAGGGTATATATTGTTGTCTTATGTCGAGATGAA
GTTGCCTCGCAAAAGCGACCTCACAAATGAGACTTTACACATTCTACATA
CCAATAGACAATGCAAACCCGGGGGTAGCTCTAGGTTACGACCAGGCGAT
CATATCTTATCTCGCTTCCTCACTGGAAGCTAGGAGATAAGATATCAACC
CGTTCAGTACCGTTCTCGTCTGATCCTCATCTAGTCATTATCTATCATCC
CTACCTCGAACACAAGGTGAAAAAACCGACCCCTATGACATGACCACAGG
GATGGGAAGCCGCCACTGTTGAGACAAACATGCATCGCAGACAGTACATA
CCGGTACAGCATAAACAGGTGACATGAATGATTATTTTCCCCACAAGAAC
TGCCGTGTTCGATATTCGTTGTCAGATGCCTCTTTAGTTCGGAAACAGTT
TCTCTAAAAGGCGCTAGATTAGTTGACCCGTTGGGAACCAGACTTCGTAA
TGATCAATATATATATATATATATATATATATATATATATATATATATAT
ATACTTGCTGACGGCCAGTCGTAAATAATGAAAAATCCGTCGACAGAATG
CTTAACCACCTCTGCATAGGAACTGTCTAGTGTATCTCAGGCCCAGAACG
GGTTCGATTTTTGTCGTTTTGGGCTTTATCTCGGATTTGTGTAGAGCGAG
AACGGGCTAACACCACCTTTTTTTCTTGGAACCCAAATAATACACAGGCA
CTCAACAGCCAGATTAGGCGATCAGAAGTTCCTAGAGGGTTAACATACAC
GCAGATACACGTATATGCAAATCCTCGTGTTGTCACAAGTTGTATGTACA
TGCGAATCCATGCAGTTCGTACTCCTTATTCGTTGCCTCAAAATGTCAAA
CACCTCGTCTATCCAACCCAGGACAATCATGACGAGCGGAGACTTCACAA
ACAGCAATGGAGGGAGATTTGGGCTGGGCGTAGGGTTCGCCTTATCTCCT
GAACTCGCGCAGAAGGTAGGTAGCGATCGTCCCGGGGGGTACAACAAAAT
TAAGTCACGAAGGGTTATCACGGTATCACTCGTATGTGTACTGTACACGT
GAACATGACAATATTTCCACATGAACGACTGACACCCCGAAAATAAATCG
CCCTTCCCTTTCATTCACTAGGATTCTCATTAATAAGTCAACTCACTTAC
CACAGCTAGCAGAAGTATAGTTGTAACGCGTATGTAATAACTCTATTGCA
CGGTACCCAGATTAGGGTCATGTAGCTGACCTCAAACTTCAGTTTTGTAC
ACTTGGCACCAAACTTAGATCAATAAGTGGGAGGGGGTACTCATATCGCG
AAGGGCGCGCGGGAAGGGATCGCCAACGCGATCATCGCGACCTTTTTGTA
TGTGTACCAAGGGGGGGGTTGTTCGCGATAACGTATGCCGGGGCCAGACA
GCCAATTTTTTTTTTTTAACCCCCGGAAGGCTACACGAGCTACCCTACCC
GTTCGGGCGTAGGTCCGTGGGCCAGACAGCCATTGATATCATGTTGCTCC
CATGCCGGGACGGAGGTATTGCGTTTTCGATGGACGTTGGTGGAATTTGA
CTGTCTCCAAGCCATACCTCGTGCCTTTTACATGGCCATGACGTCTTTGC
TCTAAAGGGACACATTGAATCCCCGTCGTATCATAATGACGTTCTCGGTA
AAATATGATCGATGCTGCGTTTTTTTTTACGTTATTCAATTTTGGGAACT
TTCTTGTCATTGGTGGTTTGTGTTCTTGATTTTATTCGTATTTACTCGCC
GTAGTCGTCAGTCATAATCCAGAATATATTGTGTTGTATACTGTGTACTG
TAGTACCCCTGGTGATGACCTTTTTCGAAATCGTTTTTTGTCGAGAAGTG
CGTACTCGTCACGAAGATTAGTTGTGTCGCCTGATTAGTATCTTGTCGAT
ATATTTGTCATAAGACAGAAGTGATCTTTCGGCAGTGCAGAGTTATTTCT
CTTGTCGAGAAAATAGAGTTCGAAAGTAACTACAAGGGTTGAAATTTTTT
TGGCTTATCTAGATCTGTTTGGCACTCCATTGATATATGTGAAAAAGTGA
GGAAGTGGAAATCGATTTGCTCAAGTCACCCCCAAAGCTCCCACGAGCGA
GGTTGGAAATTGTATTGTATTACCTTAAAATATCATATTACATGGGCGGT
ATTCCGTGGTTTTGGGGCATATCTTTGGTAACATCCGAGCAGTGAGTATA
ATAGATGTATATTATATTGTATTACATGCGATGTTCCGCATTCTTTGTCG
ATATTATGTATTATACCACGCGTCAATTTAAACGAGTTCCAACCCTGCCA
GCGAGTCTGCGTCGGTTTTACTCGCGCCACTCCCAAAGCGCCCACGAGTC
TACCTCGTTTTTACCCGACTCACCCTTGAAGCTCCCACAAGCCTAACTAA
GTTTTACTCAATTCACCCCTGAAATTCCCACGAGCCGAATTCGGTTTGCC
GGACTCATCTTCGATATATATGTACATATTGATATCGAGTCCAGTGAACG
GGGCAGTCACCGGTACTGGTGCTGCACTGTAGTTTGATGACGTTGGTTAG
TTTTCTAATGTCTCGCACATAATACAACATACATTTTTTGTGTCTTTGTT
TGAAGGTGCGAGAAGGCCAACGACTATGCCCGGCCCCGGCGGTGAATTCT
TCTGGGCTCACTTTCCTTAAAGGCGCCGCTGTCGCCGCCACTGCCACCAC
CACCCCGGCTACCCACGGCAAATCCTGCAACACTGCTCCTGCCCAGGGTG
CTTCGGCGACATCCAATGGTGCTTCGGCGACATCCAATGGTGCTAATGCC
GACGACTTCGTGGTAGACGGCAGTCTCCCCAACGGCTATGTTGTTGACAG
ACCGGGTACGCTGTCGTCATCAGATTCAGCGAGCAACCACGATGCTGGTA
TCGGTAGCCGTAGTCTTGGGGTTGAGCTTGCGGACGGTGGCGAAGGATTG
CTCCGAGAGAACGAATCGGGTGTCGGCAGCAACGACCAGTTGTTGTCATC
GAACGTTCAGCCTGTCTCGCCCGCAACTGAAGCGGATCAAATGATGAGGG
TGCACGCTGAATCGGATCAGCATGTTGGTATTGGTGCTGCTCCAGTACAT
TGTAGTACCGCCACAGAAGATCCTTCGAAACTTGAGAAAGGCCGAAACAA
CAGCTCTTCAGACGCTGTCGATGACGGGGCGGAACGGAAATCAGCTACGT
CATTATCGAATGCGTACGAACTTCGAAGCGTAAAAGATCCTTCTCCGGCG
GCGATGGAGGATAACGATAGCGGCCGCGACGAAGGGATACGGTTGGATAA
TGAACAGGATACCGCCGCTCTTGTAATAAGCACAAATTCCGAAAAACAAA
CTCGAACAATCGAACACTCTGTACCCGCACAAGATAACTTCGAAGCCCCC
GATAATTGGGAAGACTTGGATGACGATACATCGGCGCCCCTCGACGCTCT
ATCCGTGACGAGAACGGATGATACTGCGTCCGCTCTGCCTAATGCTGCAC
TGACCCCAAAACATGCTGCTGGAGATATGGAAATCCCCCCGGTGGAGGCG
TTTTCTCCGTCGCCAGCGGTGGAATCGAGAGAGGACCCTGGGTCAGGAAG
AGGAAGTCAGGGTGGCAATAGTGGTCGCAACAAGCAACAGGATGGAGAAG
AGAGATTTGTCGATGTGGGGGAATTGGAGGGTGGTCAGGCGGGAAGGAGG
CATTTCGAGGGCAGGGAGGCAGCGGCGGAACGACCGATCGTAGCGGTAAG
AGAACTGGTCATGTAAAAATCTATCCCCCTTTCAGCAAAGCTCTAGCTTT
CGTCGAGGACGCGTGGTGTTCGCTGGTCTATAAAATACTGCATGCGAAAC
GTGTGTACTGCGCCTATTATAGTTGATGTAATTTCGCTTGATTAGGTTTA
CACAATTGAATTTTGAGATTAGCTGCATAACCTTAACATGGGTAAGATAC
GATGGAGTTATTATTTGAACCCCCCCCCCCCTCTCCCACGCACATACCAA
GGCGAGATGTTCAAGTGTGACTGCGGTAGTGCGTGCGAGGACTGGATGCA
TACGGTTGGGGAATGCATGTCCTCTACTACGAGAAAGAGAGATGGTGCTT
TGTGAATGAAGCGGGGAAAATTGAAGTATTCGATAGAGAGACGTTTGGAA
ATCCTGGGATTGCGACAAGAAAGCGATGGTGGTTCTAGGAGATGGAAACT
GGCCTGAACACGCGAGGGTTGAGGCATATAGGTCAGGTAAAACGTGCTTG
AGTCACGTTTGGCGAAGTAGGAAAGAGCGATTGGCTATAATCGGAAGTCG
CCCTGGTGGGAATATAGGTCCTTCTTCCCAAGACGTATGGGCAATGGTCA
AACGTAACTACGCTCCCTCACCGCCCTCCAATACTCATGACCATACTCCA
TCAGGAGCACATGAGAAGATTTTAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5156:3603..9327+

>mRNA_H-paniculata_contig5156.12479.1 ID=mRNA_H-paniculata_contig5156.12479.1|Name=mRNA_H-paniculata_contig5156.12479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2670bp|location=Sequence derived from alignment at H-paniculata_contig5156:3603..9327+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGAGCGGAGACTTCACAAACAGCAATGGAGGGAGATTTGGGCTGGG
CGTAGGGTTCGCCTTATCTCCTGAACTCGCGCAGAAGATGACGAGCGGAG
ACTTCACAAACAGCAATGGAGGGAGATTTGGGCTGGGCGTAGGGTTCGCC
TTATCTCCTGAACTCGCGCAGAAGGTGCGAGAAGGCCAACGACTATGCCC
GGCCCCGGCGGTGAATTCTTCTGGGCTCACTTTCCTTAAAGGCGCCGCTG
TCGCCGCCACTGCCACCACCACCCCGGCTACCCACGGCAAATCCTGCAAC
ACTGCTCCTGCCCAGGGTGCTTCGGCGACATCCAATGGTGCTTCGGCGAC
ATCCAATGGTGCTAATGCCGACGACTTCGTGGTAGACGGCAGTCTCCCCA
ACGGCTATGTTGTTGACAGACCGGGTACGCTGTCGTCATCAGATTCAGCG
AGCAACCACGATGCTGGTATCGGTAGCCGTAGTCTTGGGGTTGAGCTTGC
GGACGGTGGCGAAGGATTGCTCCGAGAGAACGAATCGGGTGTCGGCAGCA
ACGACCAGTTGTTGTCATCGAACGTTCAGCCTGTCTCGCCCGCAACTGAA
GCGGATCAAATGATGAGGGTGCACGCTGAATCGGATCAGCATGTTGGTAT
TGGTGCTGCTCCAGTACATTGTAGTACCGCCACAGAAGATCCTTCGAAAC
TTGAGAAAGGCCGAAACAACAGCTCTTCAGACGCTGTCGATGACGGGGCG
GAACGGAAATCAGCTACGTCATTATCGAATGCGTACGAACTTCGAAGCGT
AAAAGATCCTTCTCCGGCGGCGATGGAGGATAACGATAGCGGCCGCGACG
AAGGGATACGGTTGGATAATGAACAGGATACCGCCGCTCTTGTAATAAGC
ACAAATTCCGAAAAACAAACTCGAACAATCGAACACTCTGTACCCGCACA
AGATAACTTCGAAGCCCCCGATAATTGGGAAGACTTGGATGACGATACAT
CGGCGCCCCTCGACGCTCTATCCGTGACGAGAACGGATGATACTGCGTCC
GCTCTGCCTAATGCTGCACTGACCCCAAAACATGCTGCTGGAGATATGGA
AATCCCCCCGGTGGAGGCGTTTTCTCCGTCGCCAGCGGTGGAATCGAGAG
AGGACCCTGGGTCAGGAAGAGGAAGTCAGGGTGGCAATAGTGGTCGCAAC
AAGCAACAGGATGGAGAAGAGAGATTTGTCGATGTGGGGGAATTGGAGGG
TGGTCAGGCGGGAAGGAGGCATTTCGAGGGCAGGGAGGCAGCGGCGGAAC
GACCGATCGTAGCGGTGCGAGAAGGCCAACGACTATGCCCGGCCCCGGCG
GTGAATTCTTCTGGGCTCACTTTCCTTAAAGGCGCCGCTGTCGCCGCCAC
TGCCACCACCACCCCGGCTACCCACGGCAAATCCTGCAACACTGCTCCTG
CCCAGGGTGCTTCGGCGACATCCAATGGTGCTTCGGCGACATCCAATGGT
GCTAATGCCGACGACTTCGTGGTAGACGGCAGTCTCCCCAACGGCTATGT
TGTTGACAGACCGGGTACGCTGTCGTCATCAGATTCAGCGAGCAACCACG
ATGCTGGTATCGGTAGCCGTAGTCTTGGGGTTGAGCTTGCGGACGGTGGC
GAAGGATTGCTCCGAGAGAACGAATCGGGTGTCGGCAGCAACGACCAGTT
GTTGTCATCGAACGTTCAGCCTGTCTCGCCCGCAACTGAAGCGGATCAAA
TGATGAGGGTGCACGCTGAATCGGATCAGCATGTTGGTATTGGTGCTGCT
CCAGTACATTGTAGTACCGCCACAGAAGATCCTTCGAAACTTGAGAAAGG
CCGAAACAACAGCTCTTCAGACGCTGTCGATGACGGGGCGGAACGGAAAT
CAGCTACGTCATTATCGAATGCGTACGAACTTCGAAGCGTAAAAGATCCT
TCTCCGGCGGCGATGGAGGATAACGATAGCGGCCGCGACGAAGGGATACG
GTTGGATAATGAACAGGATACCGCCGCTCTTGTAATAAGCACAAATTCCG
AAAAACAAACTCGAACAATCGAACACTCTGTACCCGCACAAGATAACTTC
GAAGCCCCCGATAATTGGGAAGACTTGGATGACGATACATCGGCGCCCCT
CGACGCTCTATCCGTGACGAGAACGGATGATACTGCGTCCGCTCTGCCTA
ATGCTGCACTGACCCCAAAACATGCTGCTGGAGATATGGAAATCCCCCCG
GTGGAGGCGTTTTCTCCGTCGCCAGCGGTGGAATCGAGAGAGGACCCTGG
GTCAGGAAGAGGAAGTCAGGGTGGCAATAGTGGTCGCAACAAGCAACAGG
ATGGAGAAGAGAGATTTGTCGATGTGGGGGAATTGGAGGGTGGTCAGGCG
GGAAGGAGGCATTTCGAGGGCAGGGAGGCAGCGGCGGAACGACCGATCGT
AGCGGCGAGATGTTCAAGTGTGACTGCGGTAGTGCGTGCGAGGACTGGAT
GCATACGGTTGGGGAATGCATGTCCTCTACTACGAGAAAGAGAGATGGTG
CTTTGTGAATGAGCGAGATGTTCAAGTGTGACTGCGGTAGTGCGTGCGAG
GACTGGATGCATACGGTTGGGGAATGCATGTCCTCTACTACGAGAAAGAG
AGATGGTGCTTTGTGAATGA
back to top