mRNA_H-paniculata_contig515.12468.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig515.12468.1
Unique NamemRNA_H-paniculata_contig515.12468.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig515.12468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig515contigH-paniculata_contig515:2880..6283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size3404
Cds size2139
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig515.12468.1prot_H-paniculata_contig515.12468.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig515 2909..5047 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930506.1303377-UTR-H-paniculata_contig515:2879..29081622930506.1303377-UTR-H-paniculata_contig515:2879..2908Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig515 2880..2908 +
1691481323.0189698-UTR-H-paniculata_contig515:2879..29081691481323.0189698-UTR-H-paniculata_contig515:2879..2908Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig515 2880..2908 +
1622930506.1667633-UTR-H-paniculata_contig515:5047..62831622930506.1667633-UTR-H-paniculata_contig515:5047..6283Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig515 5048..6283 +
1691481323.0391204-UTR-H-paniculata_contig515:5047..62831691481323.0391204-UTR-H-paniculata_contig515:5047..6283Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig515 5048..6283 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930506.1460907-CDS-H-paniculata_contig515:2908..50471622930506.1460907-CDS-H-paniculata_contig515:2908..5047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig515 2909..5047 +
1691481323.028315-CDS-H-paniculata_contig515:2908..50471691481323.028315-CDS-H-paniculata_contig515:2908..5047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig515 2909..5047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig515.12468.1

>prot_H-paniculata_contig515.12468.1 ID=prot_H-paniculata_contig515.12468.1|Name=mRNA_H-paniculata_contig515.12468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=713bp
MVSPYSNGVAIRSMDSIRRITRKLRASSGACVPQSKTLAGCQSYCSHRAN
SVAGAHLTAAPVYINLSSLKFKGRPRDPLVQYSRNCLIRRARSSSRWMTT
DAAAHPWAKARGERLDRMGTSTSHQSRSAERRLIMQQLKEAGLQRDWQKV
EAILENVVASSNVAPLRVFNAAMSALVKSGKWEKAVDILDRMEANGAAPN
VINYTTAIKACGEGKQWEKALDLLTDMEANGITPDVVSYNTVIKACRDGG
QWERAVDLLADMEANGITPDVFSYTTAMKACGDGGQWEKAVDLLAEMEEK
GVTPNVVSYNTAMKACGVAKQWEKAVDLLPDMETKGIFPDVVSYNTAMKA
CGESKQWEKAVDLLAEMEANSITPDVVSYTTVMKVCGDGGHWEAVVDLLA
EMETRGVTPNVVSYNTAIKACGEGRQWEKALDLLTEMEAKSVIPNVVSYS
TAMKACAKSKQWETTLNLLAQMEANGVTPNAISYTTAMKACGEGKQWEKA
VDILIHMEARGIAPDVFNYNAAMKACGDSGQWEKAVNILIDMMAKGTIPD
VVSYNTAMKACGKGKQWERAVDLLAEMEANGITPDVVGYTTTIKACGDSG
QWEKAVDLLVEMEAKGVIPNSVSYNTAMHACGAAKQWEKALDLLTTMEAK
GILPDVGSYSTAIAACRSAGQLEKAGDILKDMHAQRTRASVVPSRSHIKG
NAGGSWYRTIRR*
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mRNA from alignment at H-paniculata_contig515:2880..6283+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig515.12468.1 ID=mRNA_H-paniculata_contig515.12468.1|Name=mRNA_H-paniculata_contig515.12468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3404bp|location=Sequence derived from alignment at H-paniculata_contig515:2880..6283+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAACGTTCCTCGACTTCTTCATGGTGCAATGGTCTCTCCCTACTCCAAT
GGCGTTGCCATAAGATCAATGGACTCAATCCGGCGGATCACGCGAAAGCT
GAGAGCTTCCAGTGGTGCCTGTGTTCCTCAGTCCAAAACTTTAGCGGGGT
GTCAATCCTATTGTTCGCATAGGGCAAATTCTGTGGCAGGAGCCCACTTG
ACAGCGGCACCGGTATATATAAATCTAAGCAGCCTCAAGTTCAAGGGGCG
GCCACGTGACCCTCTTGTGCAATATTCTCGCAATTGCCTGATACGGCGGG
CACGGTCATCTTCTAGATGGATGACGACAGATGCGGCGGCTCATCCATGG
GCGAAGGCACGAGGTGAAAGGCTAGATAGGATGGGGACAAGTACATCACA
TCAAAGTCGATCTGCTGAAAGGCGGTTGATTATGCAGCAGCTGAAGGAGG
CTGGCCTCCAAAGAGATTGGCAAAAAGTGGAGGCTATCCTGGAGAACGTG
GTTGCATCTTCCAATGTGGCCCCTCTGCGGGTATTCAATGCTGCCATGAG
TGCTTTGGTCAAGAGCGGCAAGTGGGAGAAAGCTGTGGATATTTTGGATA
GGATGGAGGCGAATGGTGCTGCACCGAACGTGATCAACTATACGACAGCA
ATAAAAGCATGTGGAGAGGGCAAACAATGGGAGAAGGCGTTGGATCTGTT
GACCGATATGGAGGCGAACGGTATTACTCCTGACGTGGTGAGCTACAACA
CGGTGATAAAAGCATGTAGGGATGGTGGACAATGGGAGAGAGCTGTGGAT
CTGCTGGCCGACATGGAAGCGAACGGTATCACTCCTGATGTCTTCAGCTA
CACGACAGCGATGAAAGCATGTGGAGACGGTGGACAGTGGGAGAAGGCTG
TGGATCTGTTGGCTGAGATGGAGGAGAAAGGGGTCACTCCGAACGTGGTC
AGCTACAACACCGCAATGAAAGCATGCGGGGTGGCTAAGCAGTGGGAGAA
GGCTGTCGATCTACTACCCGATATGGAGACGAAGGGAATCTTTCCCGATG
TGGTCAGCTATAACACCGCAATGAAAGCATGCGGGGAGAGTAAGCAGTGG
GAGAAGGCTGTGGATCTGCTGGCCGAAATGGAGGCGAATAGTATCACTCC
TGACGTGGTCAGCTACACAACGGTAATGAAAGTATGTGGAGACGGTGGTC
ACTGGGAGGCGGTCGTGGATCTGCTGGCCGAGATGGAAACGAGGGGCGTC
ACTCCTAATGTGGTCAGCTATAACACGGCGATAAAAGCGTGTGGAGAGGG
TAGGCAGTGGGAGAAGGCGTTGGATCTGTTGACCGAGATGGAGGCGAAGA
GTGTAATCCCTAACGTGGTCAGCTACAGCACGGCGATGAAAGCATGCGCA
AAGAGTAAGCAGTGGGAAACAACTTTGAATCTGTTGGCTCAGATGGAGGC
AAATGGTGTCACTCCTAACGCAATCAGCTACACCACGGCCATGAAAGCAT
GCGGAGAGGGGAAGCAGTGGGAGAAGGCTGTGGATATCTTGATCCACATG
GAAGCGAGGGGTATTGCTCCAGACGTATTCAACTACAACGCAGCGATGAA
AGCATGCGGGGACAGTGGGCAGTGGGAGAAGGCTGTGAATATTTTGATCG
ATATGATGGCGAAGGGTACAATTCCTGATGTGGTCAGCTACAACACAGCG
ATGAAAGCATGCGGGAAGGGTAAGCAGTGGGAGAGAGCTGTAGATCTCTT
AGCCGAGATGGAGGCGAACGGTATCACTCCTGACGTCGTCGGCTACACTA
CGACAATTAAAGCATGTGGGGACAGTGGGCAATGGGAGAAGGCTGTGGAT
CTGTTGGTCGAGATGGAGGCGAAGGGTGTCATCCCGAACTCGGTCAGCTA
CAACACGGCTATGCACGCGTGTGGGGCAGCTAAGCAGTGGGAGAAGGCTC
TGGATCTGTTGACCACTATGGAAGCGAAAGGTATTCTTCCTGATGTGGGC
AGCTACAGCACAGCCATCGCGGCTTGTCGCAGCGCTGGGCAATTAGAAAA
GGCTGGCGATATTTTGAAGGATATGCACGCCCAACGGACTCGTGCATCGG
TTGTGCCTTCGCGTTCACATATCAAGGGGAACGCGGGAGGAAGCTGGTAT
AGAACAATACGACGGTGATCTTGAGCGGTTCTCTGGTACTTCATCTGGCA
CATCAAGAACACTACTGAAGTGATATGCCTCGTAATACCGGAAGTTTTAT
TGCTCTACGAATGTGTATTGACAAATGGTATTCATGACACCTGGTACGTG
ATGAGAATCGTTTTTTTTCCAAAATGAGGATAAACTTTTAGATGAGGTCT
AACCCCCAAACAGTGCTTTTCCTAACCCAAAGTCATGACCGGTTACCTTT
AATTTGGACGACCCAATCACACTAGATCGCATCGTAACTGTTTTAAGGTT
TTTCACTACTCCCGTGCCCCCACAACGTTGTGCGATAGCCCTCTTTTTGG
GTTCAAAATGCCGATTTCCCCCCCTAGAAATCGTGGCAAAAAGAGTGCTT
TCTCATAAAGCTGTGGGGGGATGGAAGTAATGAAAAGGCCTAACACAGTT
ACAGCGCGATCGAGGCGCGTTGGATCCTTGACATAACTGGTCATGGAAAG
CACTGTTTTGAGGTTGAACCTCATGTAAGTGTCGAACCTCAATATGGAAC
ATACACTGTTCAAGCCGAGGGTTTGTATAATAGTCGACGTGAACAGTGAT
TCCAACTTTGGGCCTCGACAACGTCGCGAATTGCGATAGTTTTTGCGCCG
AAAGGTGGGCATCGCAAGTTATCAGGGCAGTCATAAAGGAGATGTGTCAA
TGGCGTTTGGCGTCGTCCAGAGAGAAACAAATATTTGTGTGAAGAGGACT
GAAAAATAGTGTAACTAACAGGCGATACTCGGGATCGGGGATCAACTTTC
TTGTTGGGATTAATGTTCCGTTGAATTTGAATGGAATGGGTCGAAAATGG
GGCTAGCGAAAGGCACTTTCCGTGCGAATCGAGGTATGGAAAGGTTTCCA
AATTCATTGTGCAGAGTAAATAGCGGTGAGGTGGACACGACTCTCCGCGG
GAAGTGCCTTTCGCTAGCGCCATTTTCGACGTATTCTATTCAAATTCAAC
GGAACATCAATCCCAACAAGAAAGTTGATACCCAATCCGAGTATAATCGC
CTGTTCATTTGGCAAGTTTTTGCGGGTCTTGAAATGATTTAGAGCAACCA
AGACACTATGCTAAGTCATCAAATAATATGCTTGCCGTGGTCGAGGTATT
AGCGGTTTGAAATTGGGCTGTGCTACTGTGAAGAAAATAATGTTCATACA
AGTTTAATGATATTGGTGAAATGGAGGGCGAGCTTTTTGGGGGAACGAGC
TCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig515:2880..6283+

>mRNA_H-paniculata_contig515.12468.1 ID=mRNA_H-paniculata_contig515.12468.1|Name=mRNA_H-paniculata_contig515.12468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4278bp|location=Sequence derived from alignment at H-paniculata_contig515:2880..6283+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCTCTCCCTACTCCAATGGCGTTGCCATAAGATCAATGGACTCAAT
CCGGCGGATCACGCGAAAGCTGAGAGCTTCCAGTGGTGCCTGTGTTCCTC
AGTCCAAAACTTTAGCGGGGTGTCAATCCTATTGTTCGCATAGGGCAAAT
TCTGTGGCAGGAGCCCACTTGACAGCGGCACCGGTATATATAAATCTAAG
CAGCCTCAAGTTCAAGGGGCGGCCACGTGACCCTCTTGTGCAATATTCTC
GCAATTGCCTGATACGGCGGGCACGGTCATCTTCTAGATGGATGACGACA
GATGCGGCGGCTCATCCATGGGCGAAGGCACGAGGTGAAAGGCTAGATAG
GATGGGGACAAGTACATCACATCAAAGTCGATCTGCTGAAAGGCGGTTGA
TTATGCAGCAGCTGAAGGAGGCTGGCCTCCAAAGAGATTGGCAAAAAGTG
GAGGCTATCCTGGAGAACGTGGTTGCATCTTCCAATGTGGCCCCTCTGCG
GGTATTCAATGCTGCCATGAGTGCTTTGGTCAAGAGCGGCAAGTGGGAGA
AAGCTGTGGATATTTTGGATAGGATGGAGGCGAATGGTGCTGCACCGAAC
GTGATCAACTATACGACAGCAATAAAAGCATGTGGAGAGGGCAAACAATG
GGAGAAGGCGTTGGATCTGTTGACCGATATGGAGGCGAACGGTATTACTC
CTGACGTGGTGAGCTACAACACGGTGATAAAAGCATGTAGGGATGGTGGA
CAATGGGAGAGAGCTGTGGATCTGCTGGCCGACATGGAAGCGAACGGTAT
CACTCCTGATGTCTTCAGCTACACGACAGCGATGAAAGCATGTGGAGACG
GTGGACAGTGGGAGAAGGCTGTGGATCTGTTGGCTGAGATGGAGGAGAAA
GGGGTCACTCCGAACGTGGTCAGCTACAACACCGCAATGAAAGCATGCGG
GGTGGCTAAGCAGTGGGAGAAGGCTGTCGATCTACTACCCGATATGGAGA
CGAAGGGAATCTTTCCCGATGTGGTCAGCTATAACACCGCAATGAAAGCA
TGCGGGGAGAGTAAGCAGTGGGAGAAGGCTGTGGATCTGCTGGCCGAAAT
GGAGGCGAATAGTATCACTCCTGACGTGGTCAGCTACACAACGGTAATGA
AAGTATGTGGAGACGGTGGTCACTGGGAGGCGGTCGTGGATCTGCTGGCC
GAGATGGAAACGAGGGGCGTCACTCCTAATGTGGTCAGCTATAACACGGC
GATAAAAGCGTGTGGAGAGGGTAGGCAGTGGGAGAAGGCGTTGGATCTGT
TGACCGAGATGGAGGCGAAGAGTGTAATCCCTAACGTGGTCAGCTACAGC
ACGGCGATGAAAGCATGCGCAAAGAGTAAGCAGTGGGAAACAACTTTGAA
TCTGTTGGCTCAGATGGAGGCAAATGGTGTCACTCCTAACGCAATCAGCT
ACACCACGGCCATGAAAGCATGCGGAGAGGGGAAGCAGTGGGAGAAGGCT
GTGGATATCTTGATCCACATGGAAGCGAGGGGTATTGCTCCAGACGTATT
CAACTACAACGCAGCGATGAAAGCATGCGGGGACAGTGGGCAGTGGGAGA
AGGCTGTGAATATTTTGATCGATATGATGGCGAAGGGTACAATTCCTGAT
GTGGTCAGCTACAACACAGCGATGAAAGCATGCGGGAAGGGTAAGCAGTG
GGAGAGAGCTGTAGATCTCTTAGCCGAGATGGAGGCGAACGGTATCACTC
CTGACGTCGTCGGCTACACTACGACAATTAAAGCATGTGGGGACAGTGGG
CAATGGGAGAAGGCTGTGGATCTGTTGGTCGAGATGGAGGCGAAGGGTGT
CATCCCGAACTCGGTCAGCTACAACACGGCTATGCACGCGTGTGGGGCAG
CTAAGCAGTGGGAGAAGGCTCTGGATCTGTTGACCACTATGGAAGCGAAA
GGTATTCTTCCTGATGTGGGCAGCTACAGCACAGCCATCGCGGCTTGTCG
CAGCGCTGGGCAATTAGAAAAGGCTGGCGATATTTTGAAGGATATGCACG
CCCAACGGACTCGTGCATCGGTTGTGCCTTCGCGTTCACATATCAAGGGG
AACGCGGGAGGAAGCTGGTATAGAACAATACGACGGTGAATGGTCTCTCC
CTACTCCAATGGCGTTGCCATAAGATCAATGGACTCAATCCGGCGGATCA
CGCGAAAGCTGAGAGCTTCCAGTGGTGCCTGTGTTCCTCAGTCCAAAACT
TTAGCGGGGTGTCAATCCTATTGTTCGCATAGGGCAAATTCTGTGGCAGG
AGCCCACTTGACAGCGGCACCGGTATATATAAATCTAAGCAGCCTCAAGT
TCAAGGGGCGGCCACGTGACCCTCTTGTGCAATATTCTCGCAATTGCCTG
ATACGGCGGGCACGGTCATCTTCTAGATGGATGACGACAGATGCGGCGGC
TCATCCATGGGCGAAGGCACGAGGTGAAAGGCTAGATAGGATGGGGACAA
GTACATCACATCAAAGTCGATCTGCTGAAAGGCGGTTGATTATGCAGCAG
CTGAAGGAGGCTGGCCTCCAAAGAGATTGGCAAAAAGTGGAGGCTATCCT
GGAGAACGTGGTTGCATCTTCCAATGTGGCCCCTCTGCGGGTATTCAATG
CTGCCATGAGTGCTTTGGTCAAGAGCGGCAAGTGGGAGAAAGCTGTGGAT
ATTTTGGATAGGATGGAGGCGAATGGTGCTGCACCGAACGTGATCAACTA
TACGACAGCAATAAAAGCATGTGGAGAGGGCAAACAATGGGAGAAGGCGT
TGGATCTGTTGACCGATATGGAGGCGAACGGTATTACTCCTGACGTGGTG
AGCTACAACACGGTGATAAAAGCATGTAGGGATGGTGGACAATGGGAGAG
AGCTGTGGATCTGCTGGCCGACATGGAAGCGAACGGTATCACTCCTGATG
TCTTCAGCTACACGACAGCGATGAAAGCATGTGGAGACGGTGGACAGTGG
GAGAAGGCTGTGGATCTGTTGGCTGAGATGGAGGAGAAAGGGGTCACTCC
GAACGTGGTCAGCTACAACACCGCAATGAAAGCATGCGGGGTGGCTAAGC
AGTGGGAGAAGGCTGTCGATCTACTACCCGATATGGAGACGAAGGGAATC
TTTCCCGATGTGGTCAGCTATAACACCGCAATGAAAGCATGCGGGGAGAG
TAAGCAGTGGGAGAAGGCTGTGGATCTGCTGGCCGAAATGGAGGCGAATA
GTATCACTCCTGACGTGGTCAGCTACACAACGGTAATGAAAGTATGTGGA
GACGGTGGTCACTGGGAGGCGGTCGTGGATCTGCTGGCCGAGATGGAAAC
GAGGGGCGTCACTCCTAATGTGGTCAGCTATAACACGGCGATAAAAGCGT
GTGGAGAGGGTAGGCAGTGGGAGAAGGCGTTGGATCTGTTGACCGAGATG
GAGGCGAAGAGTGTAATCCCTAACGTGGTCAGCTACAGCACGGCGATGAA
AGCATGCGCAAAGAGTAAGCAGTGGGAAACAACTTTGAATCTGTTGGCTC
AGATGGAGGCAAATGGTGTCACTCCTAACGCAATCAGCTACACCACGGCC
ATGAAAGCATGCGGAGAGGGGAAGCAGTGGGAGAAGGCTGTGGATATCTT
GATCCACATGGAAGCGAGGGGTATTGCTCCAGACGTATTCAACTACAACG
CAGCGATGAAAGCATGCGGGGACAGTGGGCAGTGGGAGAAGGCTGTGAAT
ATTTTGATCGATATGATGGCGAAGGGTACAATTCCTGATGTGGTCAGCTA
CAACACAGCGATGAAAGCATGCGGGAAGGGTAAGCAGTGGGAGAGAGCTG
TAGATCTCTTAGCCGAGATGGAGGCGAACGGTATCACTCCTGACGTCGTC
GGCTACACTACGACAATTAAAGCATGTGGGGACAGTGGGCAATGGGAGAA
GGCTGTGGATCTGTTGGTCGAGATGGAGGCGAAGGGTGTCATCCCGAACT
CGGTCAGCTACAACACGGCTATGCACGCGTGTGGGGCAGCTAAGCAGTGG
GAGAAGGCTCTGGATCTGTTGACCACTATGGAAGCGAAAGGTATTCTTCC
TGATGTGGGCAGCTACAGCACAGCCATCGCGGCTTGTCGCAGCGCTGGGC
AATTAGAAAAGGCTGGCGATATTTTGAAGGATATGCACGCCCAACGGACT
CGTGCATCGGTTGTGCCTTCGCGTTCACATATCAAGGGGAACGCGGGAGG
AAGCTGGTATAGAACAATACGACGGTGA
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