mRNA_H-paniculata_contig51456.12460.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51456.12460.1
Unique NamemRNA_H-paniculata_contig51456.12460.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51456.12460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51456contigH-paniculata_contig51456:445..813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size366
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930505.3388152-CDS-H-paniculata_contig51456:444..8101622930505.3388152-CDS-H-paniculata_contig51456:444..810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51456 445..810 -
1691481322.689675-CDS-H-paniculata_contig51456:444..8101691481322.689675-CDS-H-paniculata_contig51456:444..810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51456 445..810 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930505.3607712-UTR-H-paniculata_contig51456:810..8131622930505.3607712-UTR-H-paniculata_contig51456:810..813Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51456 811..813 -
1691481322.7032983-UTR-H-paniculata_contig51456:810..8131691481322.7032983-UTR-H-paniculata_contig51456:810..813Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51456 811..813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51456.12460.1prot_H-paniculata_contig51456.12460.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51456 445..810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51456.12460.1

>prot_H-paniculata_contig51456.12460.1 ID=prot_H-paniculata_contig51456.12460.1|Name=mRNA_H-paniculata_contig51456.12460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
MLLFSLKTAEDKKITRRHRSPTAAWQALSTHFGAKTRVARLNLLVKIIER
RVKIQEDPTLSLSASLEYATRLRGVGLPIDDKLVCEIFFVNLAKEYKGLK
ERPLADKTLLDNDEFAQLLREH
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mRNA from alignment at H-paniculata_contig51456:445..813-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51456.12460.1 ID=mRNA_H-paniculata_contig51456.12460.1|Name=mRNA_H-paniculata_contig51456.12460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=369bp|location=Sequence derived from alignment at H-paniculata_contig51456:445..813- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGATGCTGCTCTTTAGTCTGAAGACTGCAGAGGACAAGAAAATAACCCG
CCGACACCGATCCCCAACTGCTGCGTGGCAGGCGTTGTCTACCCATTTTG
GTGCAAAGACACGGGTCGCCAGGTTGAATTTGCTTGTGAAAATCATAGAA
CGGAGGGTTAAGATTCAAGAGGACCCGACACTCTCTCTTAGCGCGTCACT
TGAATACGCCACGCGTCTGCGTGGGGTTGGTCTCCCCATCGACGACAAGC
TAGTGTGCGAGATTTTCTTCGTGAATCTGGCAAAAGAATATAAGGGGCTC
AAGGAGCGCCCTCTCGCAGACAAAACTTTGTTAGACAACGATGAGTTTGC
CCAACTGCTTCGCGAGCAT
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Coding sequence (CDS) from alignment at H-paniculata_contig51456:445..813-

>mRNA_H-paniculata_contig51456.12460.1 ID=mRNA_H-paniculata_contig51456.12460.1|Name=mRNA_H-paniculata_contig51456.12460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig51456:445..813- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCTCTTTAGTCTGAAGACTGCAGAGGACAAGAAAATAACCCGCCG
ACACCGATCCCCAACTGCTGCGTGGCAGGCGTTGTCTACCCATTTTGGTG
CAAAGACACGGGTCGCCAGGTTGAATTTGCTTGTGAAAATCATAGAACGG
AGGGTTAAGATTCAAGAGGACCCGACACTCTCTCTTAGCGCGTCACTTGA
ATACGCCACGCGTCTGCGTGGGGTTGGTCTCCCCATCGACGACAAGCTAG
TGTGCGAGATTTTCTTCGTGAATCTGGCAAAAGAATATAAGGGGCTCAAG
GAGCGCCCTCTCGCAGACAAAACTTTGTTAGACAACGATGAGTTTGCCCA
ACTGCTTCGCGAGCATATGCTGCTCTTTAGTCTGAAGACTGCAGAGGACA
AGAAAATAACCCGCCGACACCGATCCCCAACTGCTGCGTGGCAGGCGTTG
TCTACCCATTTTGGTGCAAAGACACGGGTCGCCAGGTTGAATTTGCTTGT
GAAAATCATAGAACGGAGGGTTAAGATTCAAGAGGACCCGACACTCTCTC
TTAGCGCGTCACTTGAATACGCCACGCGTCTGCGTGGGGTTGGTCTCCCC
ATCGACGACAAGCTAGTGTGCGAGATTTTCTTCGTGAATCTGGCAAAAGA
ATATAAGGGGCTCAAGGAGCGCCCTCTCGCAGACAAAACTTTGTTAGACA
ACGATGAGTTTGCCCAACTGCTTCGCGAGCAT
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