prot_H-paniculata_contig51428.12458.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig51428.12458.1
Unique Nameprot_H-paniculata_contig51428.12458.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length148
Homology
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BLAST of mRNA_H-paniculata_contig51428.12458.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.120e-7
Identity = 28/73 (38.36%), Postives = 47/73 (64.38%), Query Frame = 0 
Query:    1 AWFGLIDKYQNSSKQRRRILMRQLDGTTMKQNQDPDVFLARVFQLRDELAHMGEEVSEERLTDIVIEGLTDDY 73
             W  L  K+Q + + RRR L R+L+  TM+   DPD+F+  V+ L ++L  +G  V++E+L DI+++GL  +Y
Sbjct:  235 VWKELESKFQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEY 307
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51428.12458.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE1.120e-738.36Integrase catalytic domain-containing protein n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..95
e-value: 6.9E-12
score: 45.2
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 134..148
score: 9.076

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51428contigH-paniculata_contig51428:654..1097 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51428.12458.1mRNA_H-paniculata_contig51428.12458.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig51428 654..1097 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig51428.12458.1 ID=prot_H-paniculata_contig51428.12458.1|Name=mRNA_H-paniculata_contig51428.12458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
AWFGLIDKYQNSSKQRRRILMRQLDGTTMKQNQDPDVFLARVFQLRDELA
HMGEEVSEERLTDIVIEGLTDDYEQMKYNAERDPEFSLSEIEVTLRNMFA
NRVAREGSSRKSGGRESAMVATTSVSKSVKFNGKCHACGKIGHVMGDC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC