mRNA_H-paniculata_contig51415.12456.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig51415.12456.1 vs. uniprot
Match: A0A146H565_MYCCL (Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H565_MYCCL) HSP 1 Score: 94.7 bits (234), Expect = 5.100e-20 Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 1
Query: 49 QEAQASPEWEHWQRAEEVEMQGLIDNRAWTQVERPKNKLVVSTMMIYKNKIGEDGKVDKYKCRLVAHGNRQIKDIHYEEVSSPTPEAASIKMVLSLAAIQDWELRHIDFEQAYL 390
+EA+ P+W HWQ A E+ L WT V RP + VV + + K G+++KYK RLVA G Q++ + Y E +PT + ASI++VL++AA DW++ DF AYL
Sbjct: 1066 EEARRRPDWPHWQAAINTELDSLKSAGTWTVVPRPSGRNVVDCKWVLRIKKNAAGEIEKYKARLVARGFTQVQGVDYYETFAPTAKIASIRLVLAIAARNDWDIDMFDFNSAYL 1179
BLAST of mRNA_H-paniculata_contig51415.12456.1 vs. uniprot
Match: A0A540NMU0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMU0_MALBA) HSP 1 Score: 87.4 bits (215), Expect = 4.110e-19 Identity = 45/121 (37.19%), Postives = 71/121 (58.68%), Query Frame = 1
Query: 28 SVEPNNHQEAQASPEWEHWQRAEEVEMQGLIDNRAWTQVERPKNKLVVSTMMIYKNKIGEDGKVDKYKCRLVAHGNRQIKDIHYEEVSSPTPEAASIKMVLSLAAIQDWELRHIDFEQAYL 390
S EP ++++A + HW+ A + E + L W V P+N+ V+ + +YK K +DGKV +YK RLVA G Q + Y+E SP ++++VLSLAA+ W+LR +D + A+L
Sbjct: 50 SSEPTHYKQAVT---YVHWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLEYDETFSPVVRHTTVRLVLSLAAMNKWDLRQLDVKNAFL 167
BLAST of mRNA_H-paniculata_contig51415.12456.1 vs. uniprot
Match: A0A1M2VH23_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VH23_TRAPU) HSP 1 Score: 85.9 bits (211), Expect = 4.790e-19 Identity = 44/113 (38.94%), Postives = 65/113 (57.52%), Query Frame = 1
Query: 34 EPNNHQEAQASPEWEHWQRAEEVEMQGLIDNRAWTQVERPKNKLVVSTMMIYKNKIGEDGKVDKYKCRLVAHGNRQIKDIHYEEVSSPTPEAASIKMVLSLAAIQDWELRHID 372
EP EAQASP+W HW+ A E+ L + + VE P N +V + +++ K +G + +YK RLVA G Q+ I + E +P + ASI+ +L+LAA DWEL +D
Sbjct: 12 EPRTLAEAQASPDWPHWENAIAKEIDNLRKHDTYDLVEPPHNTNIVGSRFVFRIKRDAEGSITQYKARLVAQGFTQMPGIDFNETFAPVAKLASIRTILALAARYDWELEQMD 124
BLAST of mRNA_H-paniculata_contig51415.12456.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA) HSP 1 Score: 90.9 bits (224), Expect = 1.130e-18 Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 1
Query: 76 EHWQRAEEVEMQGLIDNRAWTQVERPKNKLVVSTMMIYKNKIGEDGKVDKYKCRLVAHGNRQIKDIHYEEVSSPTPEAASIKMVLSLAAIQDWELRHIDFEQAYL 390
E W+ A EM L +N+ W V+ PK K VV I+ K+G DGK+D+YK RLVA G Q I YEE +P + SI++++SLAA DW+L +D + A+L
Sbjct: 862 EKWRAAVLEEMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKLHQLDVKNAFL 966
BLAST of mRNA_H-paniculata_contig51415.12456.1 vs. uniprot
Match: A0A836J0F4_9ROSI (Retrovirus-related polyprotein from transposon n=1 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836J0F4_9ROSI) HSP 1 Score: 85.1 bits (209), Expect = 1.770e-18 Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = 1
Query: 31 VEPNNHQEAQASPEWEHWQRAEEVEMQGLIDNRAWTQVERPKNKLVVSTMMIYKNKIGEDGKVDKYKCRLVAHGNRQIKDIHYEEVSSPTPEAASIKMVLSLAAIQDWELRHIDFEQAYL 390
+EP++H EA A +WQ+A E++ LI N T P K + +YK K DG +++YK RLVA G Q + I+Y++ SPT + +I+ +L++ A Q+W LR +D A+L
Sbjct: 1 MEPSSHTEAAADV---NWQQAMNSELEALITNNTLTLTSLPLGKQPIGCKWVYKLKHRSDGSIERYKARLVAKGYTQTEGINYQDTFSPTAKMITIRCLLAIVAAQNWSLRQLDVNNAFL 117
BLAST of mRNA_H-paniculata_contig51415.12456.1 vs. uniprot
Match: A0A4S4M1W0_9APHY (Uncharacterized protein (Fragment) n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4M1W0_9APHY) HSP 1 Score: 90.1 bits (222), Expect = 2.110e-18 Identity = 43/114 (37.72%), Postives = 70/114 (61.40%), Query Frame = 1
Query: 52 EAQASPEWEHWQRAEEVEMQGLIDNRAWTQVERPKNKL-VVSTMMIYKNKIGEDGKVDKYKCRLVAHGNRQIKDIHYEEVSSPTPEAASIKMVLSLAAIQDWELRHIDFEQAYL 390
EA+ P+W WQ A E++ L+ N WT VERP + + VV + ++ + K G++DKYK RLVA G Q+ + Y E +P + +S +++L++AA +W+++ DF AYL
Sbjct: 1159 EARKRPDWPKWQAAIGAEIENLVANNTWTVVERPPDDVNVVDSKIVLRVKKNAAGEIDKYKARLVARGFTQVHGVDYFETFAPVAKLSSFRLLLAIAARNNWDIKSFDFSSAYL 1272
BLAST of mRNA_H-paniculata_contig51415.12456.1 vs. uniprot
Match: A0A0J7K690_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K690_LASNI) HSP 1 Score: 89.7 bits (221), Expect = 2.800e-18 Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 1
Query: 34 EPNNHQEAQASPEWEHWQRAEEVEMQGLIDNRAWTQVERPKNKLVVSTMMIYKNKIGEDGKVDKYKCRLVAHGNRQIKDIHYEEVSSPTPEAASIKMVLSLAAIQDWELRHIDFEQAYL 390
EP ++EA AS E E W+RA E E LI N WT+ + P + ++ +I+K K DGKV +YK RLV G Q I Y E +P SI+ + SLAA +D+E+ D + A+L
Sbjct: 564 EPQTYEEAMASNEVEQWRRAIEEEESALIKNNTWTKTKLPTGRKAITAKIIFKKKRDADGKVHRYKARLVVRGFSQRPGIDYNETYAPVIRYESIRFLFSLAAKEDFEIAQFDIKTAFL 682
BLAST of mRNA_H-paniculata_contig51415.12456.1 vs. uniprot
Match: A0A6S7GWB8_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GWB8_PARCT) HSP 1 Score: 89.0 bits (219), Expect = 5.030e-18 Identity = 49/129 (37.98%), Postives = 75/129 (58.14%), Query Frame = 1
Query: 7 EELRGDLSVEPNNHQEAQASPEWEHWQRAEEVEMQGLIDNRAWTQVERPKNKLVVSTMMIYKNKIGEDGKVDKYKCRLVAHGNRQIKDIHYEEVSSPTPEAASIKMVLSLAAIQDWELRHIDFEQAYLQ 393
++L D++ EP N EA ++ W++A + E L++N W V P +K +V + ++K K DG V+K+K RLVA G Q + I Y EV SP SI+ +L+LA I DWE+ +D + A+LQ
Sbjct: 544 DDLTADIN-EPRNISEAWSNEYNTQWKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVKTAFLQ 671
BLAST of mRNA_H-paniculata_contig51415.12456.1 vs. uniprot
Match: A0A8I6XHP4_HORVV (Uncharacterized protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6XHP4_HORVV) HSP 1 Score: 89.0 bits (219), Expect = 5.160e-18 Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = 1
Query: 34 EPNNHQEAQASPEWEHWQRAEEVEMQGLIDNRAWTQVERPKNKLVVSTMMIYKNKIGEDGKVDKYKCRLVAHGNRQIKDIHYEEVSSPTPEAASIKMVLSLAAIQDWELRHIDFEQAYL 390
EP N EA SP W H A + EM+ + N WT V RP N+ V +YK K G + KYK RLVA G Q + + Y+EV +P +++++L+LAA +DW++ H+D + A+L
Sbjct: 669 EPANFVEASKSPSWTH---AMDEEMKAIESNGTWTLVTRPPNQKTVGLKWVYKLKKDTKGAIVKYKARLVAKGYVQRQGVDYDEVFAPVARIETVRVLLALAAQEDWKVHHMDVKSAFL 784
BLAST of mRNA_H-paniculata_contig51415.12456.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT) HSP 1 Score: 88.6 bits (218), Expect = 7.250e-18 Identity = 49/129 (37.98%), Postives = 74/129 (57.36%), Query Frame = 1
Query: 7 EELRGDLSVEPNNHQEAQASPEWEHWQRAEEVEMQGLIDNRAWTQVERPKNKLVVSTMMIYKNKIGEDGKVDKYKCRLVAHGNRQIKDIHYEEVSSPTPEAASIKMVLSLAAIQDWELRHIDFEQAYLQ 393
++L D++ EP N EA ++ W++A + E L++N W V P +K +V + ++K K DG V+K+K RLVA G Q + I Y EV SP SI+ +L+LA I DWE+ +D A+LQ
Sbjct: 824 DDLTADIN-EPRNISEAWSNEYNTQWKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVRTAFLQ 951 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51415.12456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig51415.12456.1 >prot_H-paniculata_contig51415.12456.1 ID=prot_H-paniculata_contig51415.12456.1|Name=mRNA_H-paniculata_contig51415.12456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp MPEELRGDLSVEPNNHQEAQASPEWEHWQRAEEVEMQGLIDNRAWTQVERback to top mRNA from alignment at H-paniculata_contig51415:864..1256+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig51415.12456.1 ID=mRNA_H-paniculata_contig51415.12456.1|Name=mRNA_H-paniculata_contig51415.12456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=393bp|location=Sequence derived from alignment at H-paniculata_contig51415:864..1256+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig51415:864..1256+ >mRNA_H-paniculata_contig51415.12456.1 ID=mRNA_H-paniculata_contig51415.12456.1|Name=mRNA_H-paniculata_contig51415.12456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig51415:864..1256+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |