mRNA_H-paniculata_contig51415.12456.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51415.12456.1
Unique NamemRNA_H-paniculata_contig51415.12456.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig51415.12456.1 vs. uniprot
Match: A0A146H565_MYCCL (Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H565_MYCCL)

HSP 1 Score: 94.7 bits (234), Expect = 5.100e-20
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 1
Query:   49 QEAQASPEWEHWQRAEEVEMQGLIDNRAWTQVERPKNKLVVSTMMIYKNKIGEDGKVDKYKCRLVAHGNRQIKDIHYEEVSSPTPEAASIKMVLSLAAIQDWELRHIDFEQAYL 390
            +EA+  P+W HWQ A   E+  L     WT V RP  + VV    + + K    G+++KYK RLVA G  Q++ + Y E  +PT + ASI++VL++AA  DW++   DF  AYL
Sbjct: 1066 EEARRRPDWPHWQAAINTELDSLKSAGTWTVVPRPSGRNVVDCKWVLRIKKNAAGEIEKYKARLVARGFTQVQGVDYYETFAPTAKIASIRLVLAIAARNDWDIDMFDFNSAYL 1179          
BLAST of mRNA_H-paniculata_contig51415.12456.1 vs. uniprot
Match: A0A540NMU0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMU0_MALBA)

HSP 1 Score: 87.4 bits (215), Expect = 4.110e-19
Identity = 45/121 (37.19%), Postives = 71/121 (58.68%), Query Frame = 1
Query:   28 SVEPNNHQEAQASPEWEHWQRAEEVEMQGLIDNRAWTQVERPKNKLVVSTMMIYKNKIGEDGKVDKYKCRLVAHGNRQIKDIHYEEVSSPTPEAASIKMVLSLAAIQDWELRHIDFEQAYL 390
            S EP ++++A     + HW+ A + E + L     W  V  P+N+ V+ +  +YK K  +DGKV +YK RLVA G  Q   + Y+E  SP     ++++VLSLAA+  W+LR +D + A+L
Sbjct:   50 SSEPTHYKQAVT---YVHWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLEYDETFSPVVRHTTVRLVLSLAAMNKWDLRQLDVKNAFL 167          
BLAST of mRNA_H-paniculata_contig51415.12456.1 vs. uniprot
Match: A0A1M2VH23_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VH23_TRAPU)

HSP 1 Score: 85.9 bits (211), Expect = 4.790e-19
Identity = 44/113 (38.94%), Postives = 65/113 (57.52%), Query Frame = 1
Query:   34 EPNNHQEAQASPEWEHWQRAEEVEMQGLIDNRAWTQVERPKNKLVVSTMMIYKNKIGEDGKVDKYKCRLVAHGNRQIKDIHYEEVSSPTPEAASIKMVLSLAAIQDWELRHID 372
            EP    EAQASP+W HW+ A   E+  L  +  +  VE P N  +V +  +++ K   +G + +YK RLVA G  Q+  I + E  +P  + ASI+ +L+LAA  DWEL  +D
Sbjct:   12 EPRTLAEAQASPDWPHWENAIAKEIDNLRKHDTYDLVEPPHNTNIVGSRFVFRIKRDAEGSITQYKARLVAQGFTQMPGIDFNETFAPVAKLASIRTILALAARYDWELEQMD 124          
BLAST of mRNA_H-paniculata_contig51415.12456.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA)

HSP 1 Score: 90.9 bits (224), Expect = 1.130e-18
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 1
Query:   76 EHWQRAEEVEMQGLIDNRAWTQVERPKNKLVVSTMMIYKNKIGEDGKVDKYKCRLVAHGNRQIKDIHYEEVSSPTPEAASIKMVLSLAAIQDWELRHIDFEQAYL 390
            E W+ A   EM  L +N+ W  V+ PK K VV    I+  K+G DGK+D+YK RLVA G  Q   I YEE  +P  +  SI++++SLAA  DW+L  +D + A+L
Sbjct:  862 EKWRAAVLEEMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKLHQLDVKNAFL 966          
BLAST of mRNA_H-paniculata_contig51415.12456.1 vs. uniprot
Match: A0A836J0F4_9ROSI (Retrovirus-related polyprotein from transposon n=1 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836J0F4_9ROSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.770e-18
Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = 1
Query:   31 VEPNNHQEAQASPEWEHWQRAEEVEMQGLIDNRAWTQVERPKNKLVVSTMMIYKNKIGEDGKVDKYKCRLVAHGNRQIKDIHYEEVSSPTPEAASIKMVLSLAAIQDWELRHIDFEQAYL 390
            +EP++H EA A     +WQ+A   E++ LI N   T    P  K  +    +YK K   DG +++YK RLVA G  Q + I+Y++  SPT +  +I+ +L++ A Q+W LR +D   A+L
Sbjct:    1 MEPSSHTEAAADV---NWQQAMNSELEALITNNTLTLTSLPLGKQPIGCKWVYKLKHRSDGSIERYKARLVAKGYTQTEGINYQDTFSPTAKMITIRCLLAIVAAQNWSLRQLDVNNAFL 117          
BLAST of mRNA_H-paniculata_contig51415.12456.1 vs. uniprot
Match: A0A4S4M1W0_9APHY (Uncharacterized protein (Fragment) n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4M1W0_9APHY)

HSP 1 Score: 90.1 bits (222), Expect = 2.110e-18
Identity = 43/114 (37.72%), Postives = 70/114 (61.40%), Query Frame = 1
Query:   52 EAQASPEWEHWQRAEEVEMQGLIDNRAWTQVERPKNKL-VVSTMMIYKNKIGEDGKVDKYKCRLVAHGNRQIKDIHYEEVSSPTPEAASIKMVLSLAAIQDWELRHIDFEQAYL 390
            EA+  P+W  WQ A   E++ L+ N  WT VERP + + VV + ++ + K    G++DKYK RLVA G  Q+  + Y E  +P  + +S +++L++AA  +W+++  DF  AYL
Sbjct: 1159 EARKRPDWPKWQAAIGAEIENLVANNTWTVVERPPDDVNVVDSKIVLRVKKNAAGEIDKYKARLVARGFTQVHGVDYFETFAPVAKLSSFRLLLAIAARNNWDIKSFDFSSAYL 1272          
BLAST of mRNA_H-paniculata_contig51415.12456.1 vs. uniprot
Match: A0A0J7K690_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K690_LASNI)

HSP 1 Score: 89.7 bits (221), Expect = 2.800e-18
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   34 EPNNHQEAQASPEWEHWQRAEEVEMQGLIDNRAWTQVERPKNKLVVSTMMIYKNKIGEDGKVDKYKCRLVAHGNRQIKDIHYEEVSSPTPEAASIKMVLSLAAIQDWELRHIDFEQAYL 390
            EP  ++EA AS E E W+RA E E   LI N  WT+ + P  +  ++  +I+K K   DGKV +YK RLV  G  Q   I Y E  +P     SI+ + SLAA +D+E+   D + A+L
Sbjct:  564 EPQTYEEAMASNEVEQWRRAIEEEESALIKNNTWTKTKLPTGRKAITAKIIFKKKRDADGKVHRYKARLVVRGFSQRPGIDYNETYAPVIRYESIRFLFSLAAKEDFEIAQFDIKTAFL 682          
BLAST of mRNA_H-paniculata_contig51415.12456.1 vs. uniprot
Match: A0A6S7GWB8_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GWB8_PARCT)

HSP 1 Score: 89.0 bits (219), Expect = 5.030e-18
Identity = 49/129 (37.98%), Postives = 75/129 (58.14%), Query Frame = 1
Query:    7 EELRGDLSVEPNNHQEAQASPEWEHWQRAEEVEMQGLIDNRAWTQVERPKNKLVVSTMMIYKNKIGEDGKVDKYKCRLVAHGNRQIKDIHYEEVSSPTPEAASIKMVLSLAAIQDWELRHIDFEQAYLQ 393
            ++L  D++ EP N  EA ++     W++A + E   L++N  W  V  P +K +V +  ++K K   DG V+K+K RLVA G  Q + I Y EV SP     SI+ +L+LA I DWE+  +D + A+LQ
Sbjct:  544 DDLTADIN-EPRNISEAWSNEYNTQWKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVKTAFLQ 671          
BLAST of mRNA_H-paniculata_contig51415.12456.1 vs. uniprot
Match: A0A8I6XHP4_HORVV (Uncharacterized protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6XHP4_HORVV)

HSP 1 Score: 89.0 bits (219), Expect = 5.160e-18
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = 1
Query:   34 EPNNHQEAQASPEWEHWQRAEEVEMQGLIDNRAWTQVERPKNKLVVSTMMIYKNKIGEDGKVDKYKCRLVAHGNRQIKDIHYEEVSSPTPEAASIKMVLSLAAIQDWELRHIDFEQAYL 390
            EP N  EA  SP W H   A + EM+ +  N  WT V RP N+  V    +YK K    G + KYK RLVA G  Q + + Y+EV +P     +++++L+LAA +DW++ H+D + A+L
Sbjct:  669 EPANFVEASKSPSWTH---AMDEEMKAIESNGTWTLVTRPPNQKTVGLKWVYKLKKDTKGAIVKYKARLVAKGYVQRQGVDYDEVFAPVARIETVRVLLALAAQEDWKVHHMDVKSAFL 784          
BLAST of mRNA_H-paniculata_contig51415.12456.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 88.6 bits (218), Expect = 7.250e-18
Identity = 49/129 (37.98%), Postives = 74/129 (57.36%), Query Frame = 1
Query:    7 EELRGDLSVEPNNHQEAQASPEWEHWQRAEEVEMQGLIDNRAWTQVERPKNKLVVSTMMIYKNKIGEDGKVDKYKCRLVAHGNRQIKDIHYEEVSSPTPEAASIKMVLSLAAIQDWELRHIDFEQAYLQ 393
            ++L  D++ EP N  EA ++     W++A + E   L++N  W  V  P +K +V +  ++K K   DG V+K+K RLVA G  Q + I Y EV SP     SI+ +L+LA I DWE+  +D   A+LQ
Sbjct:  824 DDLTADIN-EPRNISEAWSNEYNTQWKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVRTAFLQ 951          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51415.12456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A146H565_MYCCL5.100e-2040.35Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473... [more]
A0A540NMU0_MALBA4.110e-1937.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2VH23_TRAPU4.790e-1938.94Retrovirus-related Pol polyprotein from transposon... [more]
A0A151T5R4_CAJCA1.130e-1843.81Retrovirus-related Pol polyprotein from transposon... [more]
A0A836J0F4_9ROSI1.770e-1836.67Retrovirus-related polyprotein from transposon n=1... [more]
A0A4S4M1W0_9APHY2.110e-1837.72Uncharacterized protein (Fragment) n=1 Tax=Antrodi... [more]
A0A0J7K690_LASNI2.800e-1840.34Retrovirus-related pol polyprotein from transposon... [more]
A0A6S7GWB8_PARCT5.030e-1837.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8I6XHP4_HORVV5.160e-1839.50Uncharacterized protein n=1 Tax=Hordeum vulgare su... [more]
A0A7D9IUY0_PARCT7.250e-1837.98Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51415contigH-paniculata_contig51415:864..1256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score96.3
Seed ortholog evalue1.1e-17
Seed eggNOG ortholog15368.BRADI2G06305.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs37V5Q@33090,3GFFK@35493,3IKJW@38820,3M7B5@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size393
Cds size393
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930504.768097-CDS-H-paniculata_contig51415:863..12561622930504.768097-CDS-H-paniculata_contig51415:863..1256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51415 864..1256 +
1691481322.4650447-CDS-H-paniculata_contig51415:863..12561691481322.4650447-CDS-H-paniculata_contig51415:863..1256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51415 864..1256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51415.12456.1prot_H-paniculata_contig51415.12456.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51415 864..1256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51415.12456.1

>prot_H-paniculata_contig51415.12456.1 ID=prot_H-paniculata_contig51415.12456.1|Name=mRNA_H-paniculata_contig51415.12456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
MPEELRGDLSVEPNNHQEAQASPEWEHWQRAEEVEMQGLIDNRAWTQVER
PKNKLVVSTMMIYKNKIGEDGKVDKYKCRLVAHGNRQIKDIHYEEVSSPT
PEAASIKMVLSLAAIQDWELRHIDFEQAYLQ
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mRNA from alignment at H-paniculata_contig51415:864..1256+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51415.12456.1 ID=mRNA_H-paniculata_contig51415.12456.1|Name=mRNA_H-paniculata_contig51415.12456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=393bp|location=Sequence derived from alignment at H-paniculata_contig51415:864..1256+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGAAGAACTGAGGGGCGACCTCTCCGTGGAGCCCAATAATCACCA GGAGGCGCAGGCGTCGCCGGAGTGGGAACATTGGCAAAGAGCGGAGGAAG TCGAGATGCAAGGCCTAATCGACAACAGAGCTTGGACGCAAGTGGAGCGC CCGAAGAACAAGCTGGTCGTGAGCACGATGATGATATACAAAAACAAAAT CGGCGAGGACGGCAAAGTGGACAAATATAAGTGCCGCCTGGTCGCCCACG GAAACCGTCAGATCAAGGACATCCACTACGAAGAAGTTTCGTCCCCTACA CCCGAAGCGGCCAGCATCAAAATGGTGCTGTCGCTTGCGGCAATCCAGGA CTGGGAGCTACGGCACATCGACTTTGAACAAGCGTACCTGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig51415:864..1256+

>mRNA_H-paniculata_contig51415.12456.1 ID=mRNA_H-paniculata_contig51415.12456.1|Name=mRNA_H-paniculata_contig51415.12456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig51415:864..1256+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGAAGAACTGAGGGGCGACCTCTCCGTGGAGCCCAATAATCACCA
GGAGGCGCAGGCGTCGCCGGAGTGGGAACATTGGCAAAGAGCGGAGGAAG
TCGAGATGCAAGGCCTAATCGACAACAGAGCTTGGACGCAAGTGGAGCGC
CCGAAGAACAAGCTGGTCGTGAGCACGATGATGATATACAAAAACAAAAT
CGGCGAGGACGGCAAAGTGGACAAATATAAGTGCCGCCTGGTCGCCCACG
GAAACCGTCAGATCAAGGACATCCACTACGAAGAAGTTTCGTCCCCTACA
CCCGAAGCGGCCAGCATCAAAATGGTGCTGTCGCTTGCGGCAATCCAGGA
CTGGGAGCTACGGCACATCGACTTTGAACAAGCGTACCTGCAGATGCCCG
AAGAACTGAGGGGCGACCTCTCCGTGGAGCCCAATAATCACCAGGAGGCG
CAGGCGTCGCCGGAGTGGGAACATTGGCAAAGAGCGGAGGAAGTCGAGAT
GCAAGGCCTAATCGACAACAGAGCTTGGACGCAAGTGGAGCGCCCGAAGA
ACAAGCTGGTCGTGAGCACGATGATGATATACAAAAACAAAATCGGCGAG
GACGGCAAAGTGGACAAATATAAGTGCCGCCTGGTCGCCCACGGAAACCG
TCAGATCAAGGACATCCACTACGAAGAAGTTTCGTCCCCTACACCCGAAG
CGGCCAGCATCAAAATGGTGCTGTCGCTTGCGGCAATCCAGGACTGGGAG
CTACGGCACATCGACTTTGAACAAGCGTACCTGCAG
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