mRNA_H-paniculata_contig51404.12454.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51404.12454.1
Unique NamemRNA_H-paniculata_contig51404.12454.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig51404.12454.1 vs. uniprot
Match: A0A6H5JF92_9PHAE (6-phosphogluconolactonase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JF92_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.130e-25
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    1 QVIFIGTGGGKASLLPQLLVVTGARKLKSAGDASPYPAARVRVGEGRELLWCVDQAAASQCPPEIMELATTC 216
             V+FIGTG GKASLLPQLL V     L+SAG++SPYPAARV+V EG+ L WCVD+AAASQCPPEI+ LAT C
Sbjct:  204 NVMFIGTGEGKASLLPQLLSVGTDGALESAGESSPYPAARVKVAEGKALAWCVDEAAASQCPPEIVALATKC 275
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BLAST of mRNA_H-paniculata_contig51404.12454.1 vs. uniprot
Match: A0A852IYC7_9PICI (6-phosphogluconolactonase (Fragment) n=1 Tax=Tricholaema leucomelas TaxID=240729 RepID=A0A852IYC7_9PICI)

HSP 1 Score: 51.2 bits (121), Expect = 2.190e-6
Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:    1 QVIFIGTGGGKASLLPQLLVVTGARKLKSAGDASPYPAARVRVGEGRELLWCVDQAAASQ---CPPE 192
            +V+F+GTG GKA+ + ++L          A D +P PAARVR   G +LLW +DQ AA Q   CP E
Sbjct:   67 EVVFVGTGAGKAAAVKRIL---------EAEDPNPLPAARVRPRSG-QLLWLLDQEAAQQLSSCPQE 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51404.12454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JF92_9PHAE1.130e-2570.836-phosphogluconolactonase n=2 Tax=Ectocarpus TaxID... [more]
A0A852IYC7_9PICI2.190e-644.786-phosphogluconolactonase (Fragment) n=1 Tax=Trich... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51404contigH-paniculata_contig51404:939..1157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue3e-20
Seed eggNOG ortholog2880.D8LJ68
KEGG rclassRC00537
KEGG koko:K01057
KEGG ReactionR02035
KEGG Pathwayko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00004,M00006,M00008
Hectar predicted targeting categoryother localisation
EggNOG free text desc.6-phosphogluconolactonase activity
EggNOG OGsCOG0363@1,KOG3147@2759
Ec32 ortholog description6-Phosphogluconolactonase
Ec32 orthologEc-02_004960.1
EC3.1.1.31
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930504.6764102-CDS-H-paniculata_contig51404:938..11571622930504.6764102-CDS-H-paniculata_contig51404:938..1157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51404 939..1157 -
1691481322.4345033-CDS-H-paniculata_contig51404:938..11571691481322.4345033-CDS-H-paniculata_contig51404:938..1157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51404 939..1157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51404.12454.1prot_H-paniculata_contig51404.12454.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51404 939..1157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51404.12454.1

>prot_H-paniculata_contig51404.12454.1 ID=prot_H-paniculata_contig51404.12454.1|Name=mRNA_H-paniculata_contig51404.12454.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
QVIFIGTGGGKASLLPQLLVVTGARKLKSAGDASPYPAARVRVGEGRELL
WCVDQAAASQCPPEIMELATTC*
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mRNA from alignment at H-paniculata_contig51404:939..1157-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51404.12454.1 ID=mRNA_H-paniculata_contig51404.12454.1|Name=mRNA_H-paniculata_contig51404.12454.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig51404:939..1157- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTAATATTCATCGGCACCGGCGGGGGTAAAGCCTCGTTGCTCCCGCA
ACTCCTTGTTGTGACTGGCGCGAGGAAGCTAAAATCGGCCGGTGACGCGT
CCCCGTACCCGGCAGCTAGAGTAAGAGTCGGCGAGGGACGCGAACTGCTG
TGGTGTGTGGATCAAGCGGCTGCTTCGCAATGCCCTCCCGAGATTATGGA
ACTGGCGACAACGTGCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig51404:939..1157-

>mRNA_H-paniculata_contig51404.12454.1 ID=mRNA_H-paniculata_contig51404.12454.1|Name=mRNA_H-paniculata_contig51404.12454.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig51404:939..1157- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTAATATTCATCGGCACCGGCGGGGGTAAAGCCTCGTTGCTCCCGCA
ACTCCTTGTTGTGACTGGCGCGAGGAAGCTAAAATCGGCCGGTGACGCGT
CCCCGTACCCGGCAGCTAGAGTAAGAGTCGGCGAGGGACGCGAACTGCTG
TGGTGTGTGGATCAAGCGGCTGCTTCGCAATGCCCTCCCGAGATTATGGA
ACTGGCGACAACGTGCTAACAGGTAATATTCATCGGCACCGGCGGGGGTA
AAGCCTCGTTGCTCCCGCAACTCCTTGTTGTGACTGGCGCGAGGAAGCTA
AAATCGGCCGGTGACGCGTCCCCGTACCCGGCAGCTAGAGTAAGAGTCGG
CGAGGGACGCGAACTGCTGTGGTGTGTGGATCAAGCGGCTGCTTCGCAAT
GCCCTCCCGAGATTATGGAACTGGCGACAACGTGCTAA
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