mRNA_H-paniculata_contig514.12453.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig514.12453.1
Unique NamemRNA_H-paniculata_contig514.12453.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig514.12453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig514contigH-paniculata_contig514:25287..27232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size829
Cds size786
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig514.12453.1prot_H-paniculata_contig514.12453.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig514 25287..27191 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930504.307007-CDS-H-paniculata_contig514:25286..260501622930504.307007-CDS-H-paniculata_contig514:25286..26050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig514 25287..26050 -
1691481322.3034277-CDS-H-paniculata_contig514:25286..260501691481322.3034277-CDS-H-paniculata_contig514:25286..26050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig514 25287..26050 -
1622930504.3228343-CDS-H-paniculata_contig514:27169..271911622930504.3228343-CDS-H-paniculata_contig514:27169..27191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig514 27170..27191 -
1691481322.3150356-CDS-H-paniculata_contig514:27169..271911691481322.3150356-CDS-H-paniculata_contig514:27169..27191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig514 27170..27191 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930504.3361702-UTR-H-paniculata_contig514:27191..272321622930504.3361702-UTR-H-paniculata_contig514:27191..27232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig514 27192..27232 -
1691481322.3263125-UTR-H-paniculata_contig514:27191..272321691481322.3263125-UTR-H-paniculata_contig514:27191..27232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig514 27192..27232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig514.12453.1

>prot_H-paniculata_contig514.12453.1 ID=prot_H-paniculata_contig514.12453.1|Name=mRNA_H-paniculata_contig514.12453.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=262bp
MLGSSLEEEHQHRILMGMSCPHSPARHHHTLASRQAPRYTTRRSHNRPHN
STTGAIWISCRRTMTAMAAAAVAACFGLAAAAPCASIHLYGSSQHHGLNS
PLAAPTKELSVSSQSSSFHPCFAATRCSNRRSTASLGSALQDSCRRSRRH
RHSGRRLVVADREAARGGCFVLCVTPASAACSELLAPAGRSGRQRRREGG
RRGVAVTGLSTDTVRRTRAGAASAVSTLSGFLHCSENGDIWGGGSRRAGA
GVRRARGLEFMS
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mRNA from alignment at H-paniculata_contig514:25287..27232-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig514.12453.1 ID=mRNA_H-paniculata_contig514.12453.1|Name=mRNA_H-paniculata_contig514.12453.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1946bp|location=Sequence derived from alignment at H-paniculata_contig514:25287..27232- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAATGAGCGTCACAATATAGATCCTGCGGTTCTTGATACATGCTGGGT
TCTTCCCTAGAAGGTACGCTGGTTGGGGTAACAAAAAGGGGCGATGCTGG
GTAGTGATGAACTTGACCCATTTTTGTCAGTTTCGTGTGATGGTGACAGT
TTTGCTGTGATTTATTTTACGTATATTTTCGGAACGGTGCACCAGGAAAT
ATCAAATCTGGCCAGGGTAACATCTGGCTAAGTGCTGTTCAAAACCTGCT
CCCTGAGGAAGACTGAGTTGCACATATTTTCGTATGTTTTCGTTGCTGCT
TTTAATCGATGCTCCTATAGTCGATTACTCGAGTGTCTTGCATGAGATTG
ATGTAGTTTTCAACATCTGATCTATCTGCCCCAGGTTTCGTACTTCAACC
CGTAAACTTGAAAAATATACAGGATTTGGTCCACCGACAGGGGCAGAGAA
ATTCAGTTGAGTACTTGCAGCACGTATATAAGCAGCATGTGTCACTTCGG
TCACTCAAACCCCCTCTCTGACAAATTGGTATTTTGATCTGCTACGGATT
GAGAGAGGTTGTTTGGAGAGGCAAGTTTGTCAGTAGTACCGTTGGTGCCC
AAAGTTGCTCACAAATTGGCTGTCTGTCCTGTGATGTGCTGTGCTGAGTG
AGTCCCGAGTTTGTAACACCGGCAGACGTTTTGACTTTTTGACAGGTACC
CAGTTTTGTTTCCGAAAAAGAAAATGTGTGTGTTTCGAGTCGTTGCGGAT
GCTTGCTTACCCCCACTCCATGAACAGGTGCAACGACGACGTTTTATGTA
CATCGAGCATTTTGGGTGTTGAACTGGCCGTTATTTTGGACTCATTGGCA
AGAATTTGGTATCTGTGCTCGGCCCGTGTCAAAACCTTTGCCAGCGCAGC
TGCGTAATATTACCGTCCAACATTAGCCACCGCCGTATCCTAATTTTCGT
GTTTCTTGTGCTTCAGATTGGGAAAGACATGAAGTAACAGATATATTGAA
AGACTTGTACACACACAAATAGACAAGACAGTCAGTGCAGTCAGTATCTT
CCCGGCATGATGCCCGATTCAAAATGTGTTTTTTCCGGTGGTACTGTACC
GTACTTATTCCCGAAGACAAGCGTCCGCTCGAAACCCCCGCGCGATTCCC
CCGACCTCGATCCCAACCTCTGCACACTCCAGAAGAGCACCAACACCGAA
TCTTGATGGGCATGTCTTGCCCACACAGTCCAGCCCGCCACCACCACACC
CTAGCGTCACGACAGGCCCCGCGCTATACTACGCGCCGAAGTCACAATCG
CCCACACAACAGTACCACCGGAGCAATCTGGATTTCGTGTCGTCGTACTA
TGACGGCAATGGCGGCGGCGGCAGTAGCAGCCTGCTTTGGCTTGGCGGCC
GCCGCCCCGTGCGCAAGCATTCACCTCTATGGCAGCTCCCAACACCACGG
CCTAAACTCTCCCTTGGCCGCACCGACCAAAGAGCTATCCGTCAGTAGTC
AGTCATCGTCATTCCACCCTTGTTTCGCAGCCACGCGATGCAGCAATCGC
CGCTCCACCGCGTCACTGGGGAGCGCATTGCAGGACTCTTGCCGACGGAG
CCGACGGCATCGGCACAGCGGGCGGAGGCTAGTAGTAGCAGACCGAGAGG
CAGCGCGCGGGGGATGCTTTGTGCTGTGTGTAACGCCAGCGTCAGCCGCA
TGTTCTGAGCTTTTGGCCCCCGCCGGTCGCAGCGGCCGCCAACGGCGACG
TGAGGGGGGGCGCCGCGGGGTGGCGGTCACGGGTCTTTCGACGGACACCG
TGCGGCGTACTCGCGCAGGGGCTGCGTCTGCGGTTTCTACCCTGTCGGGG
TTTCTACATTGTAGTGAGAATGGAGACATTTGGGGTGGAGGAAGCAGGAG
GGCGGGGGCAGGGGTTAGGAGAGCGCGCGGGCTTGAGTTCATGTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig514:25287..27232-

>mRNA_H-paniculata_contig514.12453.1 ID=mRNA_H-paniculata_contig514.12453.1|Name=mRNA_H-paniculata_contig514.12453.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1572bp|location=Sequence derived from alignment at H-paniculata_contig514:25287..27232- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGGGTTCTTCCCTAGAAGATGCTGGGTTCTTCCCTAGAAGAAGAGC
ACCAACACCGAATCTTGATGGGCATGTCTTGCCCACACAGTCCAGCCCGC
CACCACCACACCCTAGCGTCACGACAGGCCCCGCGCTATACTACGCGCCG
AAGTCACAATCGCCCACACAACAGTACCACCGGAGCAATCTGGATTTCGT
GTCGTCGTACTATGACGGCAATGGCGGCGGCGGCAGTAGCAGCCTGCTTT
GGCTTGGCGGCCGCCGCCCCGTGCGCAAGCATTCACCTCTATGGCAGCTC
CCAACACCACGGCCTAAACTCTCCCTTGGCCGCACCGACCAAAGAGCTAT
CCGTCAGTAGTCAGTCATCGTCATTCCACCCTTGTTTCGCAGCCACGCGA
TGCAGCAATCGCCGCTCCACCGCGTCACTGGGGAGCGCATTGCAGGACTC
TTGCCGACGGAGCCGACGGCATCGGCACAGCGGGCGGAGGCTAGTAGTAG
CAGACCGAGAGGCAGCGCGCGGGGGATGCTTTGTGCTGTGTGTAACGCCA
GCGTCAGCCGCATGTTCTGAGCTTTTGGCCCCCGCCGGTCGCAGCGGCCG
CCAACGGCGACGTGAGGGGGGGCGCCGCGGGGTGGCGGTCACGGGTCTTT
CGACGGACACCGTGCGGCGTACTCGCGCAGGGGCTGCGTCTGCGGTTTCT
ACCCTGTCGGGGTTTCTACATTGTAGTGAGAATGGAGACATTTGGGGTGG
AGGAAGCAGGAGGGCGGGGGCAGGGGTTAGGAGAGCGCGCGGGCTTGAGT
TCATGTCGAAGAGCACCAACACCGAATCTTGATGGGCATGTCTTGCCCAC
ACAGTCCAGCCCGCCACCACCACACCCTAGCGTCACGACAGGCCCCGCGC
TATACTACGCGCCGAAGTCACAATCGCCCACACAACAGTACCACCGGAGC
AATCTGGATTTCGTGTCGTCGTACTATGACGGCAATGGCGGCGGCGGCAG
TAGCAGCCTGCTTTGGCTTGGCGGCCGCCGCCCCGTGCGCAAGCATTCAC
CTCTATGGCAGCTCCCAACACCACGGCCTAAACTCTCCCTTGGCCGCACC
GACCAAAGAGCTATCCGTCAGTAGTCAGTCATCGTCATTCCACCCTTGTT
TCGCAGCCACGCGATGCAGCAATCGCCGCTCCACCGCGTCACTGGGGAGC
GCATTGCAGGACTCTTGCCGACGGAGCCGACGGCATCGGCACAGCGGGCG
GAGGCTAGTAGTAGCAGACCGAGAGGCAGCGCGCGGGGGATGCTTTGTGC
TGTGTGTAACGCCAGCGTCAGCCGCATGTTCTGAGCTTTTGGCCCCCGCC
GGTCGCAGCGGCCGCCAACGGCGACGTGAGGGGGGGCGCCGCGGGGTGGC
GGTCACGGGTCTTTCGACGGACACCGTGCGGCGTACTCGCGCAGGGGCTG
CGTCTGCGGTTTCTACCCTGTCGGGGTTTCTACATTGTAGTGAGAATGGA
GACATTTGGGGTGGAGGAAGCAGGAGGGCGGGGGCAGGGGTTAGGAGAGC
GCGCGGGCTTGAGTTCATGTCG
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