mRNA_H-paniculata_contig51385.12450.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51385.12450.1
Unique NamemRNA_H-paniculata_contig51385.12450.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig51385.12450.1 vs. uniprot
Match: A0A6H5J8Z2_9PHAE (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J8Z2_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.020e-16
Identity = 35/56 (62.50%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    7 PRVVVTFSGTDPKSIRNWIDDLEAVPISQSYTTGDCENCWVHRGFLASYAVVQEQV 174
            PR+V+TFSGTDP S++NWIDDLEA  +  +Y  G CE C VHRGFLA+Y +V++QV
Sbjct:  151 PRIVITFSGTDPSSVKNWIDDLEATTVPNTYG-GLCEQCQVHRGFLAAYDLVKDQV 205
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BLAST of mRNA_H-paniculata_contig51385.12450.1 vs. uniprot
Match: A0A6B2LEG4_9EUKA (Lipase_3 domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LEG4_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 4.160e-9
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   13 VVVTFSGTDPKSIRNWIDDLEAVPISQSYTTGDCENCWVHRGFLASYAVVQEQV 174
            ++V F+GT+P SI+NWIDD++ +P S S     C  C VH GF  +Y  VQ++V
Sbjct:   31 IIVAFTGTNPLSIKNWIDDIDTIPTSYSA----CSGCAVHEGFYHTYLSVQDEV 80
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BLAST of mRNA_H-paniculata_contig51385.12450.1 vs. uniprot
Match: A0A7S3GUH3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GUH3_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.230e-8
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:   13 VVVTFSGTDPKSIRNWIDDLEAVPISQSYTTGDCENCWVHRGFLASYAVVQEQV 174
            ++++FSGTDP SIRNWIDDL+   +   Y    C+ C VH GF  S+  V++ V
Sbjct:  100 IIISFSGTDPTSIRNWIDDLKFRKVKYPY----CDKCEVHDGFYHSFQSVEDDV 149
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BLAST of mRNA_H-paniculata_contig51385.12450.1 vs. uniprot
Match: A0A7S2XH34_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XH34_9EUKA)

HSP 1 Score: 57.4 bits (137), Expect = 3.610e-8
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   13 VVVTFSGTDPKSIRNWIDDLEAVPISQS-YTTGDCENCWVHRGFLASYAVVQEQV 174
            +VV+FSGTDP  I+NWIDDL+   ++ + Y    C  C V RGF  +Y  VQ+ V
Sbjct:  138 IVVSFSGTDPLQIQNWIDDLDYFAMTPTDYVAAGCSGCKVDRGFYYTYQAVQKHV 192
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BLAST of mRNA_H-paniculata_contig51385.12450.1 vs. uniprot
Match: A0A7S0SMF3_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SMF3_9CHLO)

HSP 1 Score: 48.1 bits (113), Expect = 6.770e-5
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:   10 RVVVTFSGTDPKSIRNWIDDLEAVPISQSYTTGDCENCWVHRGFLASYAVVQEQV 174
            R VV+F GT+P S+ NW+++L+A      +  GD  +  VH GFL+SY  V++Q+
Sbjct:  181 RAVVSFRGTEPSSLENWLENLDA--SHAQWDVGDV-SYRVHAGFLSSYLAVKDQI 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51385.12450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5J8Z2_9PHAE2.020e-1662.50Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6B2LEG4_9EUKA4.160e-946.30Lipase_3 domain-containing protein n=1 Tax=Arcella... [more]
A0A7S3GUH3_9STRA3.230e-846.30Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2XH34_9EUKA3.610e-847.27Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S0SMF3_9CHLO6.770e-541.82Hypothetical protein (Fragment) n=2 Tax=Mantoniell... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51385contigH-paniculata_contig51385:743..916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue1.4e-12
Seed eggNOG ortholog2880.D8LBM6
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930504.2480564-CDS-H-paniculata_contig51385:742..9161622930504.2480564-CDS-H-paniculata_contig51385:742..916Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51385 743..916 +
1691481322.2891338-CDS-H-paniculata_contig51385:742..9161691481322.2891338-CDS-H-paniculata_contig51385:742..916Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51385 743..916 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51385.12450.1prot_H-paniculata_contig51385.12450.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51385 743..916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51385.12450.1

>prot_H-paniculata_contig51385.12450.1 ID=prot_H-paniculata_contig51385.12450.1|Name=mRNA_H-paniculata_contig51385.12450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
PSPRVVVTFSGTDPKSIRNWIDDLEAVPISQSYTTGDCENCWVHRGFLAS
YAVVQEQV
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mRNA from alignment at H-paniculata_contig51385:743..916+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51385.12450.1 ID=mRNA_H-paniculata_contig51385.12450.1|Name=mRNA_H-paniculata_contig51385.12450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig51385:743..916+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAGCCCTCGGGTGGTGGTGACATTTTCGGGCACGGATCCGAAGAGCAT
AAGGAATTGGATAGACGACCTAGAGGCCGTGCCGATTTCCCAATCGTACA
CGACAGGCGATTGCGAGAACTGTTGGGTCCATCGTGGTTTTCTAGCTTCT
TACGCAGTGGTTCAAGAGCAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig51385:743..916+

>mRNA_H-paniculata_contig51385.12450.1 ID=mRNA_H-paniculata_contig51385.12450.1|Name=mRNA_H-paniculata_contig51385.12450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig51385:743..916+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAGCCCTCGGGTGGTGGTGACATTTTCGGGCACGGATCCGAAGAGCAT
AAGGAATTGGATAGACGACCTAGAGGCCGTGCCGATTTCCCAATCGTACA
CGACAGGCGATTGCGAGAACTGTTGGGTCCATCGTGGTTTTCTAGCTTCT
TACGCAGTGGTTCAAGAGCAGGTGCCCAGCCCTCGGGTGGTGGTGACATT
TTCGGGCACGGATCCGAAGAGCATAAGGAATTGGATAGACGACCTAGAGG
CCGTGCCGATTTCCCAATCGTACACGACAGGCGATTGCGAGAACTGTTGG
GTCCATCGTGGTTTTCTAGCTTCTTACGCAGTGGTTCAAGAGCAGGTG
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