mRNA_H-paniculata_contig51381.12449.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51381.12449.1
Unique NamemRNA_H-paniculata_contig51381.12449.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51381.12449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51381contigH-paniculata_contig51381:23..394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size145
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930504.1941965-CDS-H-paniculata_contig51381:22..741622930504.1941965-CDS-H-paniculata_contig51381:22..74Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51381 23..74 +
1691481322.268236-CDS-H-paniculata_contig51381:22..741691481322.268236-CDS-H-paniculata_contig51381:22..74Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51381 23..74 +
1622930504.2112732-CDS-H-paniculata_contig51381:301..3931622930504.2112732-CDS-H-paniculata_contig51381:301..393Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51381 302..393 +
1691481322.2789493-CDS-H-paniculata_contig51381:301..3931691481322.2789493-CDS-H-paniculata_contig51381:301..393Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51381 302..393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51381.12449.1prot_H-paniculata_contig51381.12449.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51381 23..393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51381.12449.1

>prot_H-paniculata_contig51381.12449.1 ID=prot_H-paniculata_contig51381.12449.1|Name=mRNA_H-paniculata_contig51381.12449.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
LLCLKASDARIKEALQYSPQGISYDEAVVDNDNSVRLLEEDGPLAFRW
back to top

mRNA from alignment at H-paniculata_contig51381:23..394+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51381.12449.1 ID=mRNA_H-paniculata_contig51381.12449.1|Name=mRNA_H-paniculata_contig51381.12449.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=372bp|location=Sequence derived from alignment at H-paniculata_contig51381:23..394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCTGTGCCTTAAGGCTTCCGACGCGCGCATCAAGGAAGCACTACAATA
CAGTAAGTTCTGCTTTTGGTATGTGGCATTCCCAGTAACTACCTCGTCCA
TTATTCCTGGCAGGAAATTCTGTCGAGATTGGATTTCAAAGTTACTGTAA
ATATATCTATACCTACCTACGTTTTGGTGCGCAAAGGTATTTTAGTGTTT
GTTTCTTTGTTTCTTGTTCGTGAAGGAATTGTTTTCGGATGTTATACCCA
GTCTCGATTCGTATTATGTTGCGCGGCAGGTCCCCAAGGCATCTCGTACG
ATGAAGCCGTCGTGGACAACGACAACAGCGTACGACTTCTCGAGGAGGAT
GGGCCGTTGGCGTTCCGTTGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig51381:23..394+

>mRNA_H-paniculata_contig51381.12449.1 ID=mRNA_H-paniculata_contig51381.12449.1|Name=mRNA_H-paniculata_contig51381.12449.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig51381:23..394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCTGTGCCTTAAGGCTTCCGACGCGCGCATCAAGGAAGCACTACAATA
CATTGCTGTGCCTTAAGGCTTCCGACGCGCGCATCAAGGAAGCACTACAA
TACAGTCCCCAAGGCATCTCGTACGATGAAGCCGTCGTGGACAACGACAA
CAGCGTACGACTTCTCGAGGAGGATGGGCCGTTGGCGTTCCGTTGGGTCC
CCAAGGCATCTCGTACGATGAAGCCGTCGTGGACAACGACAACAGCGTAC
GACTTCTCGAGGAGGATGGGCCGTTGGCGTTCCGTTGG
back to top