mRNA_H-paniculata_contig5137.12446.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig5137.12446.1 vs. uniprot
Match: A0A6H5KD48_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD48_9PHAE) HSP 1 Score: 337 bits (863), Expect = 1.400e-103 Identity = 176/192 (91.67%), Postives = 185/192 (96.35%), Query Frame = 2
Query: 803 STNNRVAHAKGLLQVMREETEAMKRDPSRAKPSEVRVRENLQNTLTRKFVDLAKDYQNRQNKYKTSIKKKAERQIRAVKPSATEEELTAVFEQEDGVKRVMEAAILQQGDPVEVTHVLEEVKDTYRDVRRLEASIIELHKMFMDLALLVDRQGEMLDQIEFQVKSAADYVRDANTDIEHAISSQKKVRKRQC 1378
+TNNRVAHAKGLLQ MREETEAMK+DPSRAKPSEVRVRENLQNTLTRKFVDLAKDYQNRQNKYKTS+KKKAERQI AVKPSATEEELT VFEQEDGV+RVMEAAILQQGDPVEVTHVLEEVKDTY DVRRLEASI+ELHKMFMDLALLVDRQGEMLDQIE+QVKSA+DYV+DANTDI HAI S KK+RKRQC
Sbjct: 98 NTNNRVAHAKGLLQAMREETEAMKKDPSRAKPSEVRVRENLQNTLTRKFVDLAKDYQNRQNKYKTSVKKKAERQILAVKPSATEEELTTVFEQEDGVQRVMEAAILQQGDPVEVTHVLEEVKDTYHDVRRLEASILELHKMFMDLALLVDRQGEMLDQIEYQVKSASDYVKDANTDIAHAIDSSKKIRKRQC 289
BLAST of mRNA_H-paniculata_contig5137.12446.1 vs. uniprot
Match: A0A836CD59_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD59_9STRA) HSP 1 Score: 243 bits (621), Expect = 3.400e-69 Identity = 130/210 (61.90%), Postives = 162/210 (77.14%), Query Frame = 2
Query: 752 KSNATQPDPTCEPLPEGSTNNRVAHAKGLLQVMREETEAMKRDPSRAKPSEVRVRENLQNTLTRKFVDLAKDYQNRQNKYKTSIKKKAERQIRAVKPSATEEELTAVFEQEDGVKRVMEAAILQQ-GDPVEVTHVLEEVKDTYRDVRRLEASIIELHKMFMDLALLVDRQGEMLDQIEFQVKSAADYVRDANTDIEHAISSQKKVRKRQC 1378
K T D E L TN V+HAK LL +R ET A+KRDP R+ + +RVR NL+ T TRKFVD+AK+YQN+QN+YK+ +K KAER ++AVKP+ TE+E+ AVF+Q+DGVKRV+EAA++QQ GDPVEV +VL EV+D Y DVRRLEASI+ELH+MFMDLALLV++QGE LD IEFQVK A DYVR N +E AI+ K+VRKRQC
Sbjct: 75 KGGETAKDKITEVL--AKTNKHVSHAKTLLHDLRTETAALKRDPKRSTNANIRVRANLETTFTRKFVDVAKEYQNKQNRYKSQVKGKAERAVKAVKPTVTEDEMAAVFQQDDGVKRVLEAAVMQQSGDPVEVANVLAEVQDQYEDVRRLEASILELHRMFMDLALLVEQQGETLDVIEFQVKQAGDYVRQGNVSLEDAIAKAKQVRKRQC 282
BLAST of mRNA_H-paniculata_contig5137.12446.1 vs. uniprot
Match: A0A836CCH9_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCH9_9STRA) HSP 1 Score: 189 bits (481), Expect = 3.810e-50 Identity = 103/191 (53.93%), Postives = 138/191 (72.25%), Query Frame = 2
Query: 806 TNNRVAHAKGLLQVMREETEAMKRDPSRAKPSEVRVRENLQNTLTRKFVDLAKDYQNRQNKYKTSIKKKAERQIRAVKPSATEEELTAVFEQEDGVKRVMEAAILQQGDPVEVTHVLEEVKDTYRDVRRLEASIIELHKMFMDLALLVDRQGEMLDQIEFQVKSAADYVRDANTDIEHAISSQKKVRKRQC 1378
TN +H+K LL +R ET +KRD + +RVR NL+ + KFVD AK+Y+N+Q++Y+ +K+KAER IRAVKP TEEE+TAVF EDGV RV++AA+LQ ++ VL EV+DTY+DVRRLEASI+ELH+MFMDLALLV++QGE LD IE QV A +Y+R + ++ A+ + K VR RQC
Sbjct: 85 TNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQSRTGID--DVLTEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQVIEAGEYIRHGDKNLAVAVDTAKTVRGRQC 273
BLAST of mRNA_H-paniculata_contig5137.12446.1 vs. uniprot
Match: A0A7S2LQF4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LQF4_9STRA) HSP 1 Score: 179 bits (453), Expect = 1.840e-47 Identity = 93/191 (48.69%), Postives = 130/191 (68.06%), Query Frame = 2
Query: 806 TNNRVAHAKGLLQVMREETEAMKRDPSRAKPSEVRVRENLQNTLTRKFVDLAKDYQNRQNKYKTSIKKKAERQIRAVKPSATEEELTAVFEQEDGVKRVMEAAILQQGDPVEVTHVLEEVKDTYRDVRRLEASIIELHKMFMDLALLVDRQGEMLDQIEFQVKSAADYVRDANTDIEHAISSQKKVRKRQC 1378
TN R K +L +++EE +K+ AKP+++RVRENL NTL RKF+D K YQN Q +YKT +KKK RQ++ V+P+AT++E+ + E G + + + IL G ++ V Y+DV LEAS+ ELH+MF+D ALL ++QGE+LDQIE+QVK+AADYV DAN D+ AI QKK+RK+QC
Sbjct: 4 TNGRAKKCKNMLGLLKEENANLKKTEGAAKPTDLRVRENLVNTLLRKFIDEMKRYQNSQQQYKTDVKKKVTRQVQMVRPNATDQEVDEIMRSEGGREALYQQQILSGGVNDQIKTQYRAVAGKYQDVLTLEASVAELHQMFLDFALLTEQQGELLDQIEYQVKTAADYVEDANVDVHEAIEYQKKIRKKQC 194
BLAST of mRNA_H-paniculata_contig5137.12446.1 vs. uniprot
Match: A0A4D9D821_9STRA (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D821_9STRA) HSP 1 Score: 182 bits (461), Expect = 3.120e-47 Identity = 101/191 (52.88%), Postives = 137/191 (71.73%), Query Frame = 2
Query: 806 TNNRVAHAKGLLQVMREETEAMKRDPSRAKPSEVRVRENLQNTLTRKFVDLAKDYQNRQNKYKTSIKKKAERQIRAVKPSATEEELTAVFEQEDGVKRVMEAAILQQGDPVEVTHVLEEVKDTYRDVRRLEASIIELHKMFMDLALLVDRQGEMLDQIEFQVKSAADYVRDANTDIEHAISSQKKVRKRQC 1378
TN + A AK +L M++ET +++D SR PS++R+R+NL NTLTRKFVD+ KDYQN Q KYK IK K +RQ++ VKP A+ EE+ AVF+ G +V+ AIL+ G + +V + V D Y+DV LEASI ELH+MF+D ALLV++QGEMLDQIE+QVK AA+YV + ++ AI++ KK RK QC
Sbjct: 105 TNPKAARAKKMLSKMKDETTKLRQD-SRCTPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKDKVQRQVQIVKPDASTEEIEAVFKSGGGGDQVITQAILK-GANESIRNVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGEMLDQIEYQVKGAANYVEEGTLQVQGAIANAKKARKYQC 293
BLAST of mRNA_H-paniculata_contig5137.12446.1 vs. uniprot
Match: A0A7S2RH32_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RH32_9STRA) HSP 1 Score: 169 bits (429), Expect = 5.350e-44 Identity = 90/190 (47.37%), Postives = 125/190 (65.79%), Query Frame = 2
Query: 806 TNNRVAHAKGLLQVMREETEAMKRDPSRAKPSEVRVRENLQNTLTRKFVDLAKDYQNRQNKYKTSIKKKAERQIRAVKPSATEEELTAVFEQEDGVKRVMEAAILQQGDPVEVTHVLEEVKDTYRDVRRLEASIIELHKMFMDLALLVDRQGEMLDQIEFQVKSAADYVRDANTDIEHAISSQKKVRKRQ 1375
TN R K +L +++EE E +K+ KPS++R+R+NL NTLTRKFVD K YQN Q KYKT ++KKA RQI+ +KP ATEEE+ + + + G + + + IL G + V Y+DV LE S+ ELH++F D ALL D+QGE+LDQIEF VK AAD++ DAN ++ +I QK +RK+Q
Sbjct: 25 TNKRAKRTKNILSLLKEENEKLKK--KNVKPSDLRIRQNLCNTLTRKFVDEIKQYQNAQQKYKTDLRKKAARQIKVIKPDATEEEVDVIMKTDGGREALYKETILSGGVNDNIKTAYANVAGKYQDVLALEQSVAELHQLFQDFALLTDQQGELLDQIEFNVKEAADHIEDANVEVFESIELQKSIRKKQ 212
BLAST of mRNA_H-paniculata_contig5137.12446.1 vs. uniprot
Match: A0A1Z5KDM7_FISSO (Syntaxin 1B/2/3 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDM7_FISSO) HSP 1 Score: 172 bits (435), Expect = 5.540e-44 Identity = 96/191 (50.26%), Postives = 128/191 (67.02%), Query Frame = 2
Query: 806 TNNRVAHAKGLLQVMREETEAMKRDPSRAKPSEVRVRENLQNTLTRKFVDLAKDYQNRQNKYKTSIKKKAERQIRAVKPSATEEELTAVFEQEDGVKRVMEAAILQQGDPVEVTHVLEEVKDTYRDVRRLEASIIELHKMFMDLALLVDRQGEMLDQIEFQVKSAADYVRDANTDIEHAISSQKKVRKRQC 1378
TN + K LL +++EET+ ++ + + K S++RVRENL NTLTRKF+D K YQ Q KYKT IKKK RQ++ VKP AT+E++ AV E G + IL G +V E+V Y+DV LE S+ ELH+MF+D ALL ++QGE+LDQIEFQVK A DYV +AN D+ AI Q+K+RK+QC
Sbjct: 92 TNKQAKRTKTLLGLLKEETQKLQEN-KQIKQSDLRVRENLCNTLTRKFIDEMKAYQAAQQKYKTDIKKKVARQVQIVKPDATDEDIDAVMRSEGGRDALYREQILAGGVNDQVKTTYEKVAGKYQDVLALEHSVAELHQMFLDFALLTEQQGELLDQIEFQVKQAGDYVEEANVDVYEAIEYQRKIRKKQC 281
BLAST of mRNA_H-paniculata_contig5137.12446.1 vs. uniprot
Match: A0A7S2K4X5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K4X5_9STRA) HSP 1 Score: 172 bits (435), Expect = 6.020e-44 Identity = 96/193 (49.74%), Postives = 132/193 (68.39%), Query Frame = 2
Query: 803 STNNRVAHAKGLLQVMREETEAMKRDPSRAKPSEVRVRENLQNTLTRKFVDLAKDYQNRQNKYKTSIKKKAERQIRAVKPSATEEELTAVFEQEDGVKRVMEAAILQQ-GDPVEVTHVLEEVKDTYRDVRRLEASIIELHKMFMDLALLVDRQGEMLDQIEFQVKSAADYVRDANTDIEHAISSQKKVRKRQC 1378
STN + HAK LL++++++ E K K S++R+RENL NTLTRKFVD K+YQN Q KYK+ IKKK +RQ++ VKP AT EE+ AV + E G + + IL DP++ + V Y+DV LEAS+ ELH+MF D ALL ++QGE+L+QIEFQV++AADY+ + N DI +I QK +RK+QC
Sbjct: 93 STNKKAKHAKALLELIKKQNEQEK-GKGNIKNSDMRIRENLNNTLTRKFVDEMKEYQNAQQKYKSDIKKKVKRQVQIVKPDATNEEIDAVMKSEGGRDALYKDKILTGVADPIKNAYA--NVAGKYQDVLALEASVTELHQMFQDFALLTEQQGELLNQIEFQVETAADYIEEGNVDIVKSIEYQKSIRKKQC 282
BLAST of mRNA_H-paniculata_contig5137.12446.1 vs. uniprot
Match: F0YHT3_AURAN (t-SNARE coiled-coil homology domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHT3_AURAN) HSP 1 Score: 169 bits (429), Expect = 9.620e-44 Identity = 101/210 (48.10%), Postives = 136/210 (64.76%), Query Frame = 2
Query: 755 SNATQPDPTCEPLP-EGSTNNRVAHAKGLLQVMREETEAMKRDPSRAKPSEVRVRENLQNTLTRKFVDLAKDYQNRQNKYKTSIKKKAERQIRAVKPSATEEELTAVFEQEDGVKRVMEAAILQ-QGDPVEVTHVLEEVKDTYRDVRRLEASIIELHKMFMDLALLVDRQGEMLDQIEFQVKSAADYVRDANTDIEHAISSQKKVRKRQC 1378
SNAT+ + E P TN RV K LLQ M +ET + K K SE R+RENL NTL RKF D+ KDYQ Q +YK+ I+K +RQ+ VKP T +E+ V + G V +AIL+ DP++ + +V D Y+DV +LE S+ ELH+MF+D ALL ++QGE+LDQIE+QVKSA +Y+ D NTDI++AI QK++RKR C
Sbjct: 42 SNATEEQLSRELTPLVDKTNRRVKATKELLQRMSDETASAK---GTVKQSEFRIRENLANTLMRKFGDVCKDYQREQQRYKSEIQKTVKRQLEIVKPDVTPDEIDTVL-RNGGTSEVFRSAILKGAADPIKSAYA--DVADKYQDVLKLEQSVAELHQMFLDFALLTEQQGELLDQIEYQVKSAGEYIEDGNTDIQYAIQYQKEIRKRYC 245
BLAST of mRNA_H-paniculata_contig5137.12446.1 vs. uniprot
Match: B7FXT5_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FXT5_PHATC) HSP 1 Score: 171 bits (433), Expect = 1.050e-43 Identity = 97/191 (50.79%), Postives = 125/191 (65.45%), Query Frame = 2
Query: 806 TNNRVAHAKGLLQVMREETEAMKRDPSRAKPSEVRVRENLQNTLTRKFVDLAKDYQNRQNKYKTSIKKKAERQIRAVKPSATEEELTAVFEQEDGVKRVMEAAILQQGDPVEVTHVLEEVKDTYRDVRRLEASIIELHKMFMDLALLVDRQGEMLDQIEFQVKSAADYVRDANTDIEHAISSQKKVRKRQC 1378
TN R K +L +++EE + +K D KPS++R ENL NTLTRKF+D K YQ Q KYKT IKKK RQ++ VKP ATEEE+ AV E G + IL G ++ ++V Y+DV LE S+ ELH+MF+D ALL ++QGE+LDQIEFQVK AADYV DAN D+ +I QK +RK+QC
Sbjct: 92 TNKRAKRTKNMLGLLKEENQKLKGDGD-VKPSDLRY-ENLCNTLTRKFIDEMKAYQASQQKYKTDIKKKVTRQVQIVKPDATEEEVDAVMRSEGGRDALYRERILAGGVNDQINTTYKKVAGKYQDVLALEQSVAELHQMFLDFALLTEQQGELLDQIEFQVKQAADYVEDANVDVYESIEHQKSIRKKQC 280 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5137.12446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5137.12446.1 >prot_H-paniculata_contig5137.12446.1 ID=prot_H-paniculata_contig5137.12446.1|Name=mRNA_H-paniculata_contig5137.12446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=200bp MREETEAMKRDPSRAKPSEVRVRENLQNTLTRKFVDLAKDYQNRQNKYKTback to top mRNA from alignment at H-paniculata_contig5137:2005..10012- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5137.12446.1 ID=mRNA_H-paniculata_contig5137.12446.1|Name=mRNA_H-paniculata_contig5137.12446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8008bp|location=Sequence derived from alignment at H-paniculata_contig5137:2005..10012- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5137:2005..10012- >mRNA_H-paniculata_contig5137.12446.1 ID=mRNA_H-paniculata_contig5137.12446.1|Name=mRNA_H-paniculata_contig5137.12446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1200bp|location=Sequence derived from alignment at H-paniculata_contig5137:2005..10012- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |