mRNA_H-paniculata_contig51315.12443.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51315.12443.1
Unique NamemRNA_H-paniculata_contig51315.12443.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51315.12443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51315contigH-paniculata_contig51315:122..995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51315.12443.1prot_H-paniculata_contig51315.12443.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51315 143..995 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930502.8886871-UTR-H-paniculata_contig51315:121..1421622930502.8886871-UTR-H-paniculata_contig51315:121..142Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51315 122..142 +
1691481321.7382257-UTR-H-paniculata_contig51315:121..1421691481321.7382257-UTR-H-paniculata_contig51315:121..142Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51315 122..142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930502.9067833-CDS-H-paniculata_contig51315:142..2251622930502.9067833-CDS-H-paniculata_contig51315:142..225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51315 143..225 +
1691481321.751839-CDS-H-paniculata_contig51315:142..2251691481321.751839-CDS-H-paniculata_contig51315:142..225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51315 143..225 +
1622930502.926632-CDS-H-paniculata_contig51315:859..9951622930502.926632-CDS-H-paniculata_contig51315:859..995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51315 860..995 +
1691481321.760028-CDS-H-paniculata_contig51315:859..9951691481321.760028-CDS-H-paniculata_contig51315:859..995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51315 860..995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51315.12443.1

>prot_H-paniculata_contig51315.12443.1 ID=prot_H-paniculata_contig51315.12443.1|Name=mRNA_H-paniculata_contig51315.12443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MQREGVTPNIVSYNSTITACGEGGDGKRLEEATSLWREMQREGVTPDSMC
YNSVIIACEGGQWEEAMRLLSEM
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mRNA from alignment at H-paniculata_contig51315:122..995+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51315.12443.1 ID=mRNA_H-paniculata_contig51315.12443.1|Name=mRNA_H-paniculata_contig51315.12443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=874bp|location=Sequence derived from alignment at H-paniculata_contig51315:122..995+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGTGGGTCTGTTGAGAGAGATGCAGAGGGAGGGGGTAACCCCCAACAT
CGTAAGTTACAACTCGACGATCACAGCGTGCGGAGAAGGGGGCGATGGAA
AAAGGTGATGGTTTTGTTGACGGAGATGGAGAGGGAGAGAGACGCTATAC
ACCCCAAACGTCATGACCTACCTTCAAATTCGGCTATAACAGCATCCGCG
AACGCCGGGTAGTGGGAGAAGGCCATTAGCCTGTTCGGAATAATGCCAAG
AGAGAGCTTAACCCCTAATGTTGTCAGCTACAGTTCGGCGATCACAGCGT
CTGCAAATAACAGCCCATACTAGAAGTTTACAATGGGTTTCTTTAGGATG
AAACGTGTGTTCACGATTTTCCCGATATCATGTGCCAAATCAAGCATAAG
TAGAACAGAGTCGGTGAAAGTACATGGCATCAGCGTTCGTTCGGTGTTGT
GTTTTTCATGTTGGGTCCTCTGCTGCCGAGATATCGGTATTCAAAGCAAC
GACCTCGTGGCCGTTCAATTCTCTTTGATTTTGCTGTTTTGCCATACATC
TTGAGATTCCCTGATCCGCATTTTATCACAAGTAGATGCGTTCTATCGTT
GTAGAAGAGAATATTTCAAGTTCATTAGATTTTGGGGATGGGATATAGTG
CCAAATTGTAACTGAATAGTTTTCATTCTAAAGAAAATAAATGGCCATGT
TAAGTTTCTATTTAATACGCACTGTTAAATGCTGGGAGGTTGGAGGAGGC
CACGAGTCTGTGGAGGGAGATGCAGAGGGAGGGCGTAACCCCCGACAGTA
TGTGCTACAACTCAGTGATCATTGCGTGCGAAGGAGGTCAGTGGGAGGAG
GCCATGCGACTGTTGAGCGAGATG
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Coding sequence (CDS) from alignment at H-paniculata_contig51315:122..995+

>mRNA_H-paniculata_contig51315.12443.1 ID=mRNA_H-paniculata_contig51315.12443.1|Name=mRNA_H-paniculata_contig51315.12443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig51315:122..995+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGAGGGAGGGGGTAACCCCCAACATCGTAAGTTACAACTCGACGAT
CACAGCGTGCGGAGAAGGGGGCGATGGAAAAAGATGCAGAGGGAGGGGGT
AACCCCCAACATCGTAAGTTACAACTCGACGATCACAGCGTGCGGAGAAG
GGGGCGATGGAAAAAGGTTGGAGGAGGCCACGAGTCTGTGGAGGGAGATG
CAGAGGGAGGGCGTAACCCCCGACAGTATGTGCTACAACTCAGTGATCAT
TGCGTGCGAAGGAGGTCAGTGGGAGGAGGCCATGCGACTGTTGAGCGAGA
TGGTTGGAGGAGGCCACGAGTCTGTGGAGGGAGATGCAGAGGGAGGGCGT
AACCCCCGACAGTATGTGCTACAACTCAGTGATCATTGCGTGCGAAGGAG
GTCAGTGGGAGGAGGCCATGCGACTGTTGAGCGAGATG
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