prot_H-paniculata_contig5129.12439.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5129.12439.1
Unique Nameprot_H-paniculata_contig5129.12439.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length391
Homology
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BLAST of mRNA_H-paniculata_contig5129.12439.1 vs. uniprot
Match: D7G4A8_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4A8_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 4.950e-83
Identity = 203/462 (43.94%), Postives = 262/462 (56.71%), Query Frame = 0 
Query:    2 VSVRPATWVAVVSLLLEPLFTAFILSNSDAFGTTAANQSAVGI------GVTELLHRMLGSPTNLVLGAVNLGGGSGSXXXXXXXXXXXXVNAAANA--ISRARWLTGMSQVALWIATMLGLAHMALRFTQASRGARRTVGTYLTALKDLAARKRGTGGWARVERLTGQGGSCAGTAPNSSVPGGSXXXXXXXGERVGGSDG--------------------EYLNARKHSASH--PSFERGEVTIRGLYCSRLDVALTGKSTNNSCADHGAGIAG-------------------------STRPFYVTAALGSVTARTSVRTGFSPNFTEVFPLGLNCPIRGAVLVLAVMDSFETGRSGRGDRVVGQVHIPVDAADLVPGST-----ADM-----------SGGGPTYRLKGEWELMGVVVPGETGARLGGEIVVRGPPDPNSAAGRLRRR--ESVGWYAR 390
            V+V+PA  VA+ +LLLEPLF+A++L                        G+  LL  +L    + VLG V        XXXXXXXXXXXX         ++RARWLT  +Q+ LW A +L  A+++LR ++   G  +TVG Y++AL+ LAA+KRGTGGW R+++         GT          XXXXXXX  R  G  G                    E +   +H  S+  P FERGEVT+R +YCS LD ++TG+  +N  +  G G+ G                         S+RPFYVT +LG +TA+TS R GFSP FTEVFPLG +CPIRGA L +AV+DSFETGRSGRGDRVVG+VH+P++AA LVPG++     ADM            G GP YRL+G+WEL G +     GAR+G +I+V GPP P+SAAGRLRRR  ESVGWYAR
Sbjct:  121 VAVKPAAAVALAALLLEPLFSAYVLGXXXXXXXXXXXXXXXXXXXXTRSGLARLL--LLRDVPHRVLGQVGXXXXXXXXXXXXXXXXXXXXXXXXXXXLVARARWLTAGAQLVLWAAVVLAYANVSLRLSRGPPG--KTVGGYMSALRSLAAKKRGTGGWVRIDQW--------GTGXXXXXXXXXXXXXXXXXARANGLLGSLYETLMGXXXXXXXGRICPEAMALCQHQKSYDGPPFERGEVTVRSIYCSGLDASITGRPPSNGNSVGGVGVGGXXXXXXXXXXXXXXXXXXGGLIAGGSSRPFYVTVSLGGLTAKTSARQGFSPTFTEVFPLGCDCPIRGAYLTIAVVDSFETGRSGRGDRVVGEVHLPLEAAQLVPGTSGLDDNADMFSSSSSSGGWDGGSGPAYRLRGDWELQGALGGPLCGARVGADIMVHGPPSPSSAAGRLRRRRRESVGWYAR 570
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5129.12439.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4A8_ECTSI4.950e-8343.94C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000008C2 domainPFAMPF00168C2coord: 246..321
e-value: 1.1E-5
score: 25.7
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..104
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 123..390
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 7..26
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..6
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 105..122
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.724
NoneNo IPR availableSUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 249..322
NoneNo IPR availableTMHMMTMhelixcoord: 98..120
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5129contigH-paniculata_contig5129:11485..13799 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5129.12439.1mRNA_H-paniculata_contig5129.12439.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5129 11365..14155 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5129.12439.1 ID=prot_H-paniculata_contig5129.12439.1|Name=mRNA_H-paniculata_contig5129.12439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=391bp
MVSVRPATWVAVVSLLLEPLFTAFILSNSDAFGTTAANQSAVGIGVTELL
HRMLGSPTNLVLGAVNLGGGSGSGRRSKKAAAAAAVNAAANAISRARWLT
GMSQVALWIATMLGLAHMALRFTQASRGARRTVGTYLTALKDLAARKRGT
GGWARVERLTGQGGSCAGTAPNSSVPGGSGGWGGWRGERVGGSDGEYLNA
RKHSASHPSFERGEVTIRGLYCSRLDVALTGKSTNNSCADHGAGIAGSTR
PFYVTAALGSVTARTSVRTGFSPNFTEVFPLGLNCPIRGAVLVLAVMDSF
ETGRSGRGDRVVGQVHIPVDAADLVPGSTADMSGGGPTYRLKGEWELMGV
VVPGETGARLGGEIVVRGPPDPNSAAGRLRRRESVGWYAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom