mRNA_H-paniculata_contig5129.12439.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5129.12439.1
Unique NamemRNA_H-paniculata_contig5129.12439.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5129.12439.1 vs. uniprot
Match: D7G4A8_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4A8_ECTSI)

HSP 1 Score: 308 bits (788), Expect = 2.890e-94
Identity = 224/503 (44.53%), Postives = 286/503 (56.86%), Query Frame = 1 
Query:    1 FTCYDVLTRAVGPACLLLVILVPGLRSSSSRSSAPGNNSSMVSVRPATWVAVVSLLLEPLFTAFILSNSDAFGTTAANQSAVGI------GVTELLHRMLGSPTNLVLGAVNLGGGSGSXXXXXXXXXXXXVNAAANA--ISRARWLTGMSQVALWIATMLGLAHMALRFTQASRGARRTVGTYLTALKDLAARKRGTGGWARVERLTGQGGSCAGTAPNSSVPGGSXXXXXXXGERVGGSDG--------------------EYLNARKHSASH--PSFERGEVTIRGLYCSRLDVALTGKSTNNSCADHGAGIAG-------------------------STRPFYVTAALGSVTARTSVRTGFSPNFTEVFPLGLNCPIRGAVLVLAVMDSFETGRSGRGDRVVGQVHIPVDAADLVPGST-----ADM-----------SGGGPTYRLKGEWELMGVVVPGETGARLGGEIVVRGPPDPNSAAGRLRRR--ESVGWYAR 1290
            FTCYDVLT+ VGPACLLLV+L   +RS  S           V+V+PA  VA+ +LLLEPLF+A++L                        G+  LL  +L    + VLG V        XXXXXXXXXXXX         ++RARWLT  +Q+ LW A +L  A+++LR ++   G  +TVG Y++AL+ LAA+KRGTGGW R+++         GT          XXXXXXX  R  G  G                    E +   +H  S+  P FERGEVT+R +YCS LD ++TG+  +N  +  G G+ G                         S+RPFYVT +LG +TA+TS R GFSP FTEVFPLG +CPIRGA L +AV+DSFETGRSGRGDRVVG+VH+P++AA LVPG++     ADM            G GP YRL+G+WEL G +     GAR+G +I+V GPP P+SAAGRLRRR  ESVGWYAR
Sbjct:   91 FTCYDVLTKGVGPACLLLVVLSRSIRSEPS-----------VAVKPAAAVALAALLLEPLFSAYVLGXXXXXXXXXXXXXXXXXXXXTRSGLARLL--LLRDVPHRVLGQVGXXXXXXXXXXXXXXXXXXXXXXXXXXXLVARARWLTAGAQLVLWAAVVLAYANVSLRLSRGPPG--KTVGGYMSALRSLAAKKRGTGGWVRIDQW--------GTGXXXXXXXXXXXXXXXXXARANGLLGSLYETLMGXXXXXXXGRICPEAMALCQHQKSYDGPPFERGEVTVRSIYCSGLDASITGRPPSNGNSVGGVGVGGXXXXXXXXXXXXXXXXXXGGLIAGGSSRPFYVTVSLGGLTAKTSARQGFSPTFTEVFPLGCDCPIRGAYLTIAVVDSFETGRSGRGDRVVGEVHLPLEAAQLVPGTSGLDDNADMFSSSSSSGGWDGGSGPAYRLRGDWELQGALGGPLCGARVGADIMVHGPPSPSSAAGRLRRRRRESVGWYAR 570
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5129.12439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4A8_ECTSI2.890e-9444.53C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5129contigH-paniculata_contig5129:11365..14155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-02_001980.1
Exons3
Model size1649
Cds size1173
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5129.12439.1prot_H-paniculata_contig5129.12439.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5129 11485..13799 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930502.2379045-UTR-H-paniculata_contig5129:11364..114841622930502.2379045-UTR-H-paniculata_contig5129:11364..11484Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5129 11365..11484 +
1691481321.4127278-UTR-H-paniculata_contig5129:11364..114841691481321.4127278-UTR-H-paniculata_contig5129:11364..11484Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5129 11365..11484 +
1622930502.3050628-UTR-H-paniculata_contig5129:13799..141551622930502.3050628-UTR-H-paniculata_contig5129:13799..14155Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5129 13800..14155 +
1691481321.4548013-UTR-H-paniculata_contig5129:13799..141551691481321.4548013-UTR-H-paniculata_contig5129:13799..14155Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5129 13800..14155 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930502.2552931-CDS-H-paniculata_contig5129:11484..120961622930502.2552931-CDS-H-paniculata_contig5129:11484..12096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5129 11485..12096 +
1691481321.4214733-CDS-H-paniculata_contig5129:11484..120961691481321.4214733-CDS-H-paniculata_contig5129:11484..12096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5129 11485..12096 +
1622930502.2712517-CDS-H-paniculata_contig5129:12586..128701622930502.2712517-CDS-H-paniculata_contig5129:12586..12870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5129 12587..12870 +
1691481321.4294505-CDS-H-paniculata_contig5129:12586..128701691481321.4294505-CDS-H-paniculata_contig5129:12586..12870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5129 12587..12870 +
1622930502.2897754-CDS-H-paniculata_contig5129:13522..137991622930502.2897754-CDS-H-paniculata_contig5129:13522..13799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5129 13523..13799 +
1691481321.4380152-CDS-H-paniculata_contig5129:13522..137991691481321.4380152-CDS-H-paniculata_contig5129:13522..13799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5129 13523..13799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5129.12439.1

>prot_H-paniculata_contig5129.12439.1 ID=prot_H-paniculata_contig5129.12439.1|Name=mRNA_H-paniculata_contig5129.12439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=391bp
MVSVRPATWVAVVSLLLEPLFTAFILSNSDAFGTTAANQSAVGIGVTELL
HRMLGSPTNLVLGAVNLGGGSGSGRRSKKAAAAAAVNAAANAISRARWLT
GMSQVALWIATMLGLAHMALRFTQASRGARRTVGTYLTALKDLAARKRGT
GGWARVERLTGQGGSCAGTAPNSSVPGGSGGWGGWRGERVGGSDGEYLNA
RKHSASHPSFERGEVTIRGLYCSRLDVALTGKSTNNSCADHGAGIAGSTR
PFYVTAALGSVTARTSVRTGFSPNFTEVFPLGLNCPIRGAVLVLAVMDSF
ETGRSGRGDRVVGQVHIPVDAADLVPGSTADMSGGGPTYRLKGEWELMGV
VVPGETGARLGGEIVVRGPPDPNSAAGRLRRRESVGWYAR*
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mRNA from alignment at H-paniculata_contig5129:11365..14155+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5129.12439.1 ID=mRNA_H-paniculata_contig5129.12439.1|Name=mRNA_H-paniculata_contig5129.12439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2791bp|location=Sequence derived from alignment at H-paniculata_contig5129:11365..14155+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCACGTGCTACGATGTCCTCACGCGCGCGGTGGGGCCAGCCTGTCTCCT
TCTCGTGATCCTCGTTCCCGGGCTCCGGAGCAGCAGCAGCAGAAGCAGCG
CGCCCGGAAACAATAGCTCCATGGTCTCGGTAAGACCCGCGACCTGGGTT
GCCGTCGTGTCTCTCCTCCTCGAGCCCCTTTTCACCGCGTTCATCTTGAG
CAATTCGGACGCCTTCGGGACCACGGCAGCCAACCAGTCGGCGGTGGGAA
TCGGCGTCACCGAACTACTTCACCGGATGTTAGGATCGCCAACTAACTTG
GTACTCGGCGCGGTGAACCTCGGTGGCGGCAGCGGCAGCGGGCGGCGAAG
TAAAAAGGCGGCGGCAGCGGCTGCGGTGAACGCCGCCGCCAACGCGATAT
CGCGGGCACGGTGGCTCACGGGAATGTCACAGGTAGCGCTCTGGATCGCG
ACAATGCTAGGGTTAGCTCACATGGCGCTCCGCTTCACGCAAGCGTCCAG
AGGAGCTCGGCGTACTGTGGGCACGTATCTCACTGCGCTGAAGGACTTGG
CGGCGAGGAAGCGGGGGACAGGGGGGTGGGCGAGGGTCGAGAGATTGACC
GGTCAAGGTGGTAGTTGTGCTGGTACCGCACCGAATAGTTCGGTGCCTGG
TGGCAGTGGGGGATGGGGGGGGTGGAGAGGAGAACGGGTCGGGGGGTCGG
ATGGTGAATATCTTAACGCGCGCAAGCACAGCGTTCTAGGTTTTCTGTAC
GGGAGGATCGCCGAAGGATCGAACGGCGATGTGGATTCCTGCTTGTATGA
GGTAGGGAGATCTACGTATCTATACACCAATATATGTGTATATACCATTT
TTTTGGTCGGAAAGGAGGATACCCCAGAATGAAGTATGTATTTAGCAGTC
AAGGCCACAGAAAAGTTGACTCAGCTTTTCTGGTCATACCTCGAGACGGT
TTAGATCGAGAATTTTTACGATCACAAGCCCAACCTCTTGGAACTGCCGT
TTATGAACAATCACGATCAGCTCAAGGATATTGGTATTATATTGTTAAAA
GGGCTCCGCTCTTCGGTGTCGCGCTGTGGACACCTTCTTTATGGCTAAGA
AGCAATCCATTCTGACTGTTCCAGCGAGCAAACGCTAGACACGATCGGAG
GGGAAAAAGTAGTGTTGACTCTGTTCTCCCCGTACTGTTGTACTGTATAC
TCTTTTGATTTACTTCTTGAAGGCAAGTCATCCCTCGTTCGAACGTGGCG
AGGTTACGATTCGCGGTCTGTACTGCTCGCGGCTGGACGTGGCTCTCACG
GGGAAATCCACCAACAATAGCTGCGCCGATCACGGTGCGGGAATCGCGGG
ATCGACGCGACCGTTTTACGTGACGGCTGCACTCGGAAGCGTTACCGCTC
GCACTTCTGTGAGGACAGGGTTTTCGCCGAATTTCACTGAGGTGTTCCCC
TTGGGCCTCAACTGTCCGATCAGGGGTGCTGTTCTGGTTCTCGCAGTCAT
GGATAGGTATGCAATAATCATAAAATAAATAGCGCAAGGAAACACGAAAA
TTGAATCGAAGTATATATTTCAGTTGTATAGAAGTATGTATCGTCGAGCG
ATAAAGCTATTGATAGGCGGAATTTTTTCGTTGGGCGGGGGGGGGGGGGG
GGGGATTTGCGATTGATGGAACGGTGGTTAATCTTGGGGGAGATTTGGGG
TTTAGAATCGTATCAGAGTTGTTCATTTGTACGTACTAATATGATCTAGA
ATGTAAACGAGTCGTCAAGCTGCGAGTGAGGTCGTTCATCCAGTTTGTAC
CATATGCTATACATGGTATACATATCCACTTATCTGTCTCAACAACAACC
CACTACCCTATCTCATATTTTTTACTGTGTTGAGCTCGTGTTTGCCTTAA
TAAATTCATTAATAAGCAGATGCTTTGGAACTTTCGTTATTATTTATTTC
TCTGTAGGTTTAGTTCATTTCTGTTAAATATCACCTACTACTATTCAGGC
ATTATTTTTGAAGAATTTTCTCTTGGTACTACCCCTGTGATATTGTTTCC
GTGATGTACTATAATTTTATGGGTTGGATTTGACCAGATCAACTCCAAAA
AAGTAATTTATGGCGTTTCACTAACGCTCCTACCCGCGGTCGCTCTCCCT
CCCAGCAGCTTCGAGACCGGCCGCAGCGGGCGAGGTGACCGTGTGGTAGG
ACAAGTCCACATTCCCGTTGACGCGGCCGACCTAGTACCGGGGTCTACAG
CGGATATGTCTGGCGGAGGCCCCACATATCGTTTAAAGGGGGAGTGGGAG
CTCATGGGGGTGGTGGTCCCAGGAGAGACCGGGGCGCGGCTAGGCGGGGA
GATTGTAGTACGTGGACCGCCCGATCCAAACTCGGCTGCAGGCCGGCTTA
GGAGAAGGGAGTCGGTGGGGTGGTATGCGCGCTAAAGTGCAGTACGTTGA
AAAATTGCAAATTAAGGCATTCCTAAACTTGTAATAGGCCCTGTTGACTG
TTTTCGTTTGATGGATTGTTTAGTATTAGTGGGTGCCTGTGTGCGTTTTT
TTAGCGTAAAAGTGGGAAACAAACACGAGTGAATGTTTTGCATTATTTGA
GATTAGAGCATTTTTCAGGTTATGATTGACATTTGTCGTTTGTTCGGAAA
GCTTCGTTTTGTACTGTACCCCCCCCCCACGTTTGGTGTGCGTAGGGTTG
CGTAGATATATCACCACGGACAAGTACGAATGGAGCGTTCGCAACTATCT
CGAACTGTCACTATTGGTCTTGGGTAATTACGTATTTATTC
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Coding sequence (CDS) from alignment at H-paniculata_contig5129:11365..14155+

>mRNA_H-paniculata_contig5129.12439.1 ID=mRNA_H-paniculata_contig5129.12439.1|Name=mRNA_H-paniculata_contig5129.12439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2346bp|location=Sequence derived from alignment at H-paniculata_contig5129:11365..14155+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCTCGGTAAGACCCGCGACCTGGGTTGCCGTCGTGTCTCTCCTCCT
CGAGCCCCTTTTCACCGCGTTCATCTTGAGCAATTCGGACGCCTTCGGGA
CCACGGCAGCCAACCAGTCGGCGGTGGGAATCGGCGTCACCGAACTACTT
CACCGGATGTTAGGATCGCCAACTAACTTGGTACTCGGCGCGGTGAACCT
CGGTGGCGGCAGCGGCAGCGGGCGGCGAAGTAAAAAGGCGGCGGCAGCGG
CTGCGGTGAACGCCGCCGCCAACGCGATATCGCGGGCACGGTGGCTCACG
GGAATGTCACAGGTAGCGCTCTGGATCGCGACAATGCTAGGGTTAGCTCA
CATGGCGCTCCGCTTCACGCAAGCGTCCAGAGGAGCTCGGCGTACTGTGG
GCACGTATCTCACTGCGCTGAAGGACTTGGCGGCGAGGAAGCGGGGGACA
GGGGGGTGGGCGAGGGTCGAGAGATTGACCGGTCAAGGTGGTAGTTGTGC
TGGTACCGCACCGAATAGTTCGGTGCCTGGTGGCAGTGGGGGATGGGGGG
GGTGGAGAGGAGAACGGGTCGGGGGGTCGGATGGTGAATATCTTAACGCG
CGCAAGCACAGCATGGTCTCGGTAAGACCCGCGACCTGGGTTGCCGTCGT
GTCTCTCCTCCTCGAGCCCCTTTTCACCGCGTTCATCTTGAGCAATTCGG
ACGCCTTCGGGACCACGGCAGCCAACCAGTCGGCGGTGGGAATCGGCGTC
ACCGAACTACTTCACCGGATGTTAGGATCGCCAACTAACTTGGTACTCGG
CGCGGTGAACCTCGGTGGCGGCAGCGGCAGCGGGCGGCGAAGTAAAAAGG
CGGCGGCAGCGGCTGCGGTGAACGCCGCCGCCAACGCGATATCGCGGGCA
CGGTGGCTCACGGGAATGTCACAGGTAGCGCTCTGGATCGCGACAATGCT
AGGGTTAGCTCACATGGCGCTCCGCTTCACGCAAGCGTCCAGAGGAGCTC
GGCGTACTGTGGGCACGTATCTCACTGCGCTGAAGGACTTGGCGGCGAGG
AAGCGGGGGACAGGGGGGTGGGCGAGGGTCGAGAGATTGACCGGTCAAGG
TGGTAGTTGTGCTGGTACCGCACCGAATAGTTCGGTGCCTGGTGGCAGTG
GGGGATGGGGGGGGTGGAGAGGAGAACGGGTCGGGGGGTCGGATGGTGAA
TATCTTAACGCGCGCAAGCACAGCGCAAGTCATCCCTCGTTCGAACGTGG
CGAGGTTACGATTCGCGGTCTGTACTGCTCGCGGCTGGACGTGGCTCTCA
CGGGGAAATCCACCAACAATAGCTGCGCCGATCACGGTGCGGGAATCGCG
GGATCGACGCGACCGTTTTACGTGACGGCTGCACTCGGAAGCGTTACCGC
TCGCACTTCTGTGAGGACAGGGTTTTCGCCGAATTTCACTGAGGTGTTCC
CCTTGGGCCTCAACTGTCCGATCAGGGGTGCTGTTCTGGTTCTCGCAGTC
ATGGATAGGCAAGTCATCCCTCGTTCGAACGTGGCGAGGTTACGATTCGC
GGTCTGTACTGCTCGCGGCTGGACGTGGCTCTCACGGGGAAATCCACCAA
CAATAGCTGCGCCGATCACGGTGCGGGAATCGCGGGATCGACGCGACCGT
TTTACGTGACGGCTGCACTCGGAAGCGTTACCGCTCGCACTTCTGTGAGG
ACAGGGTTTTCGCCGAATTTCACTGAGGTGTTCCCCTTGGGCCTCAACTG
TCCGATCAGGGGTGCTGTTCTGGTTCTCGCAGTCATGGATAGCTTCGAGA
CCGGCCGCAGCGGGCGAGGTGACCGTGTGGTAGGACAAGTCCACATTCCC
GTTGACGCGGCCGACCTAGTACCGGGGTCTACAGCGGATATGTCTGGCGG
AGGCCCCACATATCGTTTAAAGGGGGAGTGGGAGCTCATGGGGGTGGTGG
TCCCAGGAGAGACCGGGGCGCGGCTAGGCGGGGAGATTGTAGTACGTGGA
CCGCCCGATCCAAACTCGGCTGCAGGCCGGCTTAGGAGAAGGGAGTCGGT
GGGGTGGTATGCGCGCTAACTTCGAGACCGGCCGCAGCGGGCGAGGTGAC
CGTGTGGTAGGACAAGTCCACATTCCCGTTGACGCGGCCGACCTAGTACC
GGGGTCTACAGCGGATATGTCTGGCGGAGGCCCCACATATCGTTTAAAGG
GGGAGTGGGAGCTCATGGGGGTGGTGGTCCCAGGAGAGACCGGGGCGCGG
CTAGGCGGGGAGATTGTAGTACGTGGACCGCCCGATCCAAACTCGGCTGC
AGGCCGGCTTAGGAGAAGGGAGTCGGTGGGGTGGTATGCGCGCTAA
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