prot_H-paniculata_contig51278.12437.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig51278.12437.1
Unique Nameprot_H-paniculata_contig51278.12437.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length122
Homology
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BLAST of mRNA_H-paniculata_contig51278.12437.1 vs. uniprot
Match: A0A2N9GBG4_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GBG4_FAGSY)

HSP 1 Score: 53.1 bits (126), Expect = 1.270e-5
Identity = 35/110 (31.82%), Postives = 51/110 (46.36%), Query Frame = 0 
Query:   13 QKKTKKDRDLCWVCGSLEHIARRCPKRHHDTNEGAVALLATIRGPKAMMAVTDDRKTTENPAVTREKERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVE 122
            Q K++  R LC +CG L H A  C  R     +G        R P A +A      +T N +  +  E W +DTGATDH+TS+      +TP        + NG  +P++
Sbjct:  306 QGKSENSRPLCQICGKLGHQALDCYHRMDFAYQG--------RHPPARLAAM---ASTSNSSQIQAGETWLTDTGATDHLTSNLDNLTGHTPYQGHDQVAVGNGQAIPIK 404
[Close]
BLAST of mRNA_H-paniculata_contig51278.12437.1 vs. uniprot
Match: A0A2N9HGS3_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HGS3_FAGSY)

HSP 1 Score: 53.1 bits (126), Expect = 1.280e-5
Identity = 35/110 (31.82%), Postives = 51/110 (46.36%), Query Frame = 0 
Query:   13 QKKTKKDRDLCWVCGSLEHIARRCPKRHHDTNEGAVALLATIRGPKAMMAVTDDRKTTENPAVTREKERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVE 122
            Q K++  R LC +CG L H A  C  R     +G        R P A +A      +T N +  +  E W +DTGATDH+TS+      +TP        + NG  +P++
Sbjct:  306 QGKSENSRPLCQICGKLGHQALDCYHRMDFAYQG--------RHPPARLAAM---ASTSNSSQIQAGETWLTDTGATDHLTSNLDNLTGHTPYQGHDQVAVGNGQAIPIK 404
[Close]
BLAST of mRNA_H-paniculata_contig51278.12437.1 vs. uniprot
Match: A0A2N9GSZ8_FAGSY (Uncharacterized protein n=4 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GSZ8_FAGSY)

HSP 1 Score: 53.1 bits (126), Expect = 1.320e-5
Identity = 35/110 (31.82%), Postives = 51/110 (46.36%), Query Frame = 0 
Query:   13 QKKTKKDRDLCWVCGSLEHIARRCPKRHHDTNEGAVALLATIRGPKAMMAVTDDRKTTENPAVTREKERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVE 122
            Q K++  R LC +CG L H A  C  R     +G        R P A +A      +T N +  +  E W +DTGATDH+TS+      +TP        + NG  +P++
Sbjct:  306 QGKSENSRPLCQICGKLGHQALDCYHRMDFAYQG--------RHPPARLAAM---ASTSNSSQIQAGETWLTDTGATDHLTSNLDNLTGHTPYQGHDQVAVGNGQAIPIK 404
[Close]
BLAST of mRNA_H-paniculata_contig51278.12437.1 vs. uniprot
Match: A0A2N9IKH6_FAGSY (CCHC-type domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IKH6_FAGSY)

HSP 1 Score: 51.2 bits (121), Expect = 6.080e-5
Identity = 34/110 (30.91%), Postives = 50/110 (45.45%), Query Frame = 0 
Query:   13 QKKTKKDRDLCWVCGSLEHIARRCPKRHHDTNEGAVALLATIRGPKAMMAVTDDRKTTENPAVTREKERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVE 122
            Q K++  R LC +CG L H A  C  R     +G        R P   +A      +T N +  +  E W +DTGATDH+TS+      +TP        + NG  +P++
Sbjct:  243 QGKSENSRPLCQICGKLGHQALDCYHRMDFAYQG--------RHPPERLAAM---ASTSNSSQIQAGETWLTDTGATDHLTSNLDNLTGHTPYQGHDQVAVGNGQAIPIK 341
[Close]
BLAST of mRNA_H-paniculata_contig51278.12437.1 vs. uniprot
Match: A0A2N9FUJ5_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FUJ5_FAGSY)

HSP 1 Score: 50.8 bits (120), Expect = 8.470e-5
Identity = 34/110 (30.91%), Postives = 50/110 (45.45%), Query Frame = 0 
Query:   13 QKKTKKDRDLCWVCGSLEHIARRCPKRHHDTNEGAVALLATIRGPKAMMAVTDDRKTTENPAVTREKERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVE 122
            Q K++  R +C +CG + H A  C  R     +G        R P A +A      +T N + T+  E W +DTGATDH+TS+       TP        + NG  +P+ 
Sbjct:  319 QGKSEGSRPMCQICGKVGHQALDCYHRMDFAYQG--------RHPPAKLAAM---ASTSNASQTQAGETWLTDTGATDHLTSNLGNLTGQTPYQGHDQVAVGNGQSIPIN 417
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51278.12437.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2N9GBG4_FAGSY1.270e-531.82Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9HGS3_FAGSY1.280e-531.82Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9GSZ8_FAGSY1.320e-531.82Uncharacterized protein n=4 Tax=Fagus sylvatica Ta... [more]
A0A2N9IKH6_FAGSY6.080e-530.91CCHC-type domain-containing protein n=2 Tax=Fagus ... [more]
A0A2N9FUJ5_FAGSY8.470e-530.91Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 22..38
e-value: 0.0071
score: 24.5
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 23..38
e-value: 2.5E-4
score: 21.0
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 23..38
score: 8.73
NoneNo IPR availableGENE3D4.10.60.10coord: 4..47
e-value: 1.2E-5
score: 27.1
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 8..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51278contigH-paniculata_contig51278:682..1047 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51278.12437.1mRNA_H-paniculata_contig51278.12437.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig51278 682..1047 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig51278.12437.1 ID=prot_H-paniculata_contig51278.12437.1|Name=mRNA_H-paniculata_contig51278.12437.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
RGEDYWGAKGDDQKKTKKDRDLCWVCGSLEHIARRCPKRHHDTNEGAVAL
LATIRGPKAMMAVTDDRKTTENPAVTREKERWNSDTGATDHMTSDETAFE
DYTPALPGTMCEIANGTFVPVE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf