mRNA_H-paniculata_contig51278.12437.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51278.12437.1
Unique NamemRNA_H-paniculata_contig51278.12437.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig51278.12437.1 vs. uniprot
Match: A0A2N9GBG4_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GBG4_FAGSY)

HSP 1 Score: 53.1 bits (126), Expect = 1.270e-5
Identity = 35/110 (31.82%), Postives = 51/110 (46.36%), Query Frame = 1 
Query:   37 QKKTKKDRDLCWVCGSLEHIARRCPKRHHDTNEGAVALLATIRGPKAMMAVTDDRKTTENPAVTREKERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVE 366
            Q K++  R LC +CG L H A  C  R     +G        R P A +A      +T N +  +  E W +DTGATDH+TS+      +TP        + NG  +P++
Sbjct:  306 QGKSENSRPLCQICGKLGHQALDCYHRMDFAYQG--------RHPPARLAAM---ASTSNSSQIQAGETWLTDTGATDHLTSNLDNLTGHTPYQGHDQVAVGNGQAIPIK 404
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BLAST of mRNA_H-paniculata_contig51278.12437.1 vs. uniprot
Match: A0A2N9HGS3_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HGS3_FAGSY)

HSP 1 Score: 53.1 bits (126), Expect = 1.280e-5
Identity = 35/110 (31.82%), Postives = 51/110 (46.36%), Query Frame = 1 
Query:   37 QKKTKKDRDLCWVCGSLEHIARRCPKRHHDTNEGAVALLATIRGPKAMMAVTDDRKTTENPAVTREKERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVE 366
            Q K++  R LC +CG L H A  C  R     +G        R P A +A      +T N +  +  E W +DTGATDH+TS+      +TP        + NG  +P++
Sbjct:  306 QGKSENSRPLCQICGKLGHQALDCYHRMDFAYQG--------RHPPARLAAM---ASTSNSSQIQAGETWLTDTGATDHLTSNLDNLTGHTPYQGHDQVAVGNGQAIPIK 404
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BLAST of mRNA_H-paniculata_contig51278.12437.1 vs. uniprot
Match: A0A2N9GSZ8_FAGSY (Uncharacterized protein n=4 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GSZ8_FAGSY)

HSP 1 Score: 53.1 bits (126), Expect = 1.320e-5
Identity = 35/110 (31.82%), Postives = 51/110 (46.36%), Query Frame = 1 
Query:   37 QKKTKKDRDLCWVCGSLEHIARRCPKRHHDTNEGAVALLATIRGPKAMMAVTDDRKTTENPAVTREKERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVE 366
            Q K++  R LC +CG L H A  C  R     +G        R P A +A      +T N +  +  E W +DTGATDH+TS+      +TP        + NG  +P++
Sbjct:  306 QGKSENSRPLCQICGKLGHQALDCYHRMDFAYQG--------RHPPARLAAM---ASTSNSSQIQAGETWLTDTGATDHLTSNLDNLTGHTPYQGHDQVAVGNGQAIPIK 404
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BLAST of mRNA_H-paniculata_contig51278.12437.1 vs. uniprot
Match: A0A2N9IKH6_FAGSY (CCHC-type domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IKH6_FAGSY)

HSP 1 Score: 51.2 bits (121), Expect = 6.080e-5
Identity = 34/110 (30.91%), Postives = 50/110 (45.45%), Query Frame = 1 
Query:   37 QKKTKKDRDLCWVCGSLEHIARRCPKRHHDTNEGAVALLATIRGPKAMMAVTDDRKTTENPAVTREKERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVE 366
            Q K++  R LC +CG L H A  C  R     +G        R P   +A      +T N +  +  E W +DTGATDH+TS+      +TP        + NG  +P++
Sbjct:  243 QGKSENSRPLCQICGKLGHQALDCYHRMDFAYQG--------RHPPERLAAM---ASTSNSSQIQAGETWLTDTGATDHLTSNLDNLTGHTPYQGHDQVAVGNGQAIPIK 341
[Close]
BLAST of mRNA_H-paniculata_contig51278.12437.1 vs. uniprot
Match: A0A2N9FUJ5_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FUJ5_FAGSY)

HSP 1 Score: 50.8 bits (120), Expect = 8.470e-5
Identity = 34/110 (30.91%), Postives = 50/110 (45.45%), Query Frame = 1 
Query:   37 QKKTKKDRDLCWVCGSLEHIARRCPKRHHDTNEGAVALLATIRGPKAMMAVTDDRKTTENPAVTREKERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVE 366
            Q K++  R +C +CG + H A  C  R     +G        R P A +A      +T N + T+  E W +DTGATDH+TS+       TP        + NG  +P+ 
Sbjct:  319 QGKSEGSRPMCQICGKVGHQALDCYHRMDFAYQG--------RHPPAKLAAM---ASTSNASQTQAGETWLTDTGATDHLTSNLGNLTGQTPYQGHDQVAVGNGQSIPIN 417
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51278.12437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2N9GBG4_FAGSY1.270e-531.82Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9HGS3_FAGSY1.280e-531.82Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9GSZ8_FAGSY1.320e-531.82Uncharacterized protein n=4 Tax=Fagus sylvatica Ta... [more]
A0A2N9IKH6_FAGSY6.080e-530.91CCHC-type domain-containing protein n=2 Tax=Fagus ... [more]
A0A2N9FUJ5_FAGSY8.470e-530.91Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51278contigH-paniculata_contig51278:682..1047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930501.9692204-CDS-H-paniculata_contig51278:681..10471622930501.9692204-CDS-H-paniculata_contig51278:681..1047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51278 682..1047 +
1691481321.3217316-CDS-H-paniculata_contig51278:681..10471691481321.3217316-CDS-H-paniculata_contig51278:681..1047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51278 682..1047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51278.12437.1prot_H-paniculata_contig51278.12437.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51278 682..1047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51278.12437.1

>prot_H-paniculata_contig51278.12437.1 ID=prot_H-paniculata_contig51278.12437.1|Name=mRNA_H-paniculata_contig51278.12437.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
RGEDYWGAKGDDQKKTKKDRDLCWVCGSLEHIARRCPKRHHDTNEGAVAL
LATIRGPKAMMAVTDDRKTTENPAVTREKERWNSDTGATDHMTSDETAFE
DYTPALPGTMCEIANGTFVPVE
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mRNA from alignment at H-paniculata_contig51278:682..1047+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51278.12437.1 ID=mRNA_H-paniculata_contig51278.12437.1|Name=mRNA_H-paniculata_contig51278.12437.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at H-paniculata_contig51278:682..1047+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGGTGAGGATTACTGGGGCGCCAAAGGGGACGATCAAAAGAAAACGAA
AAAGGATCGAGACCTATGCTGGGTGTGCGGTAGCTTAGAGCACATCGCGA
GACGGTGCCCGAAACGTCACCACGATACCAACGAAGGAGCAGTAGCGCTC
CTGGCTACCATAAGAGGACCCAAGGCAATGATGGCCGTAACTGACGATCG
CAAAACAACAGAAAACCCTGCCGTGACCAGAGAGAAGGAACGCTGGAATT
CAGACACCGGCGCGACAGACCACATGACGTCAGATGAGACTGCGTTTGAG
GACTACACCCCAGCACTCCCGGGGACCATGTGTGAAATCGCCAACGGGAC
ATTCGTGCCGGTAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig51278:682..1047+

>mRNA_H-paniculata_contig51278.12437.1 ID=mRNA_H-paniculata_contig51278.12437.1|Name=mRNA_H-paniculata_contig51278.12437.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig51278:682..1047+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGGTGAGGATTACTGGGGCGCCAAAGGGGACGATCAAAAGAAAACGAA
AAAGGATCGAGACCTATGCTGGGTGTGCGGTAGCTTAGAGCACATCGCGA
GACGGTGCCCGAAACGTCACCACGATACCAACGAAGGAGCAGTAGCGCTC
CTGGCTACCATAAGAGGACCCAAGGCAATGATGGCCGTAACTGACGATCG
CAAAACAACAGAAAACCCTGCCGTGACCAGAGAGAAGGAACGCTGGAATT
CAGACACCGGCGCGACAGACCACATGACGTCAGATGAGACTGCGTTTGAG
GACTACACCCCAGCACTCCCGGGGACCATGTGTGAAATCGCCAACGGGAC
ATTCGTGCCGGTAGAGCGCGGTGAGGATTACTGGGGCGCCAAAGGGGACG
ATCAAAAGAAAACGAAAAAGGATCGAGACCTATGCTGGGTGTGCGGTAGC
TTAGAGCACATCGCGAGACGGTGCCCGAAACGTCACCACGATACCAACGA
AGGAGCAGTAGCGCTCCTGGCTACCATAAGAGGACCCAAGGCAATGATGG
CCGTAACTGACGATCGCAAAACAACAGAAAACCCTGCCGTGACCAGAGAG
AAGGAACGCTGGAATTCAGACACCGGCGCGACAGACCACATGACGTCAGA
TGAGACTGCGTTTGAGGACTACACCCCAGCACTCCCGGGGACCATGTGTG
AAATCGCCAACGGGACATTCGTGCCGGTAGAG
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