mRNA_H-paniculata_contig5126.12436.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5126.12436.1
Unique NamemRNA_H-paniculata_contig5126.12436.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5126.12436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5126contigH-paniculata_contig5126:8200..9369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionProtein kinase domain
Ec32 orthologEc-16_003920.1
Exons2
Model size225
Cds size162
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5126.12436.1prot_H-paniculata_contig5126.12436.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5126 8224..9330 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930501.720924-UTR-H-paniculata_contig5126:8199..82231622930501.720924-UTR-H-paniculata_contig5126:8199..8223Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5126 8200..8223 +
1691481321.1868377-UTR-H-paniculata_contig5126:8199..82231691481321.1868377-UTR-H-paniculata_contig5126:8199..8223Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5126 8200..8223 +
1622930501.7683315-UTR-H-paniculata_contig5126:9330..93691622930501.7683315-UTR-H-paniculata_contig5126:9330..9369Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5126 9331..9369 +
1691481321.214173-UTR-H-paniculata_contig5126:9330..93691691481321.214173-UTR-H-paniculata_contig5126:9330..9369Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5126 9331..9369 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930501.7363675-CDS-H-paniculata_contig5126:8223..83471622930501.7363675-CDS-H-paniculata_contig5126:8223..8347Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5126 8224..8347 +
1691481321.1955183-CDS-H-paniculata_contig5126:8223..83471691481321.1955183-CDS-H-paniculata_contig5126:8223..8347Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5126 8224..8347 +
1622930501.754792-CDS-H-paniculata_contig5126:9292..93301622930501.754792-CDS-H-paniculata_contig5126:9292..9330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5126 9293..9330 +
1691481321.2041662-CDS-H-paniculata_contig5126:9292..93301691481321.2041662-CDS-H-paniculata_contig5126:9292..9330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5126 9293..9330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5126.12436.1

>prot_H-paniculata_contig5126.12436.1 ID=prot_H-paniculata_contig5126.12436.1|Name=mRNA_H-paniculata_contig5126.12436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
MTVVESFSEVSKWRRVLEFGSGKTGNVTLCAQPVKNLPDPKATWHCRPSR
DIK*
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mRNA from alignment at H-paniculata_contig5126:8200..9369+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5126.12436.1 ID=mRNA_H-paniculata_contig5126.12436.1|Name=mRNA_H-paniculata_contig5126.12436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig5126:8200..9369+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAGGTGAAATCAGCAAGGGAAGAAATGACCGTAGTGGAGAGTTTTTCTGA
GGTCAGCAAGTGGCGAAGAGTGCTCGAGTTTGGGAGTGGCAAGACTGGGA
ATGTTACGCTATGCGCTCAGCCAGTCAAAAACCTACCGGATCCAAAAGGT
GATACCATGTATTACTACAAATTTAGACATCACCACTCTAGACCAAATAT
ATAGTTGTGCCTTCTGGCTTGCGGTGAACCCGCAGCGAGTGGTACGTTAA
AAACTGGCGGAGGGGAGGTGGTTGCGATACAAATGCTGCTCTGAGTCTGC
GCGGGTATCTTCGACTTGTAAGCATCGAAAGCACCCGACACAAGAAAACA
TTTATTATCTGTGCATCGAAAATGTTCCGATAATCACTACCTGGTACAGT
TGACGAGGGAAAAAAGGGTATTTTTTTGCACTGGTTCGATCAAATACCCA
CCAGTCCTTTTTCAAGATTTACTAGGGTCTGTAAGTAAGTGGTGGAAGTC
GGCACGTCTCAGTCAAGGCCCGGTCTACCAGTTCATCCGTTGCTCGACAG
CACCGCTAGGTGAACCTTCCAACGTATTTTGCATGCAGTGACAAGACATC
ATGATGAGAACACTCATATGGCAACAGAGTGTGTCACCACTGTGTTCCAC
GCTGTGAAGCGAGTGGAGCGACGAAGCCTGCAGTCCGCCGGAGCAGTCCG
AAACATAATGCGGGAGAAAAGCACACTGCAAGCTCTCAAGGGGGTGCGTA
AATGTAACGATGGGTATAACACAGCAGTCAATTCATATCCGCCTGTCGTG
GCCGTACGGCTTTCAAGGTCTGCCAGGGATTACTTGTACGTAAGTGGAAT
TTTTTCTCCTCACAATCTGAGAAGCGCCTTATCCTTTCTCATATATGACG
TCAAACAAAATTTCGAGCGTGATACCATGTTCAATGCTCTCCCTAGGTAA
TACGTCACAATACATAATCTAGATGATTTGCATGTGTACTGACTCACTAG
CTGAAGTAGCTGTATTGGCGCAATTACCGACTCTAAACGACACATCAAAC
CCCTCACCTCTCTTGTCACCCTGACACCCTCTTTCGGATACAGCAACCTG
GCATTGTCGACCTTCGAGGGACATCAAATGATGAGGATTACCTCTTTTTT
GTAATGGAGCCAGTGCTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5126:8200..9369+

>mRNA_H-paniculata_contig5126.12436.1 ID=mRNA_H-paniculata_contig5126.12436.1|Name=mRNA_H-paniculata_contig5126.12436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig5126:8200..9369+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCGTAGTGGAGAGTTTTTCTGAGGTCAGCAAGTGGCGAAGAGTGCT
CGAGTTTGGGAGTGGCAAGACTGGGAATGTTACGCTATGCGCTCAGCCAG
TCAAAAACCTACCGGATCCAAAAGATGACCGTAGTGGAGAGTTTTTCTGA
GGTCAGCAAGTGGCGAAGAGTGCTCGAGTTTGGGAGTGGCAAGACTGGGA
ATGTTACGCTATGCGCTCAGCCAGTCAAAAACCTACCGGATCCAAAAGCA
ACCTGGCATTGTCGACCTTCGAGGGACATCAAATGACAACCTGGCATTGT
CGACCTTCGAGGGACATCAAATGA
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