mRNA_H-paniculata_contig5124.12434.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5124.12434.1
Unique NamemRNA_H-paniculata_contig5124.12434.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5124.12434.1 vs. uniprot
Match: A0A7S1XMW6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMW6_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.030e-15
Identity = 58/156 (37.18%), Postives = 78/156 (50.00%), Query Frame = 3
Query:   24 RRSALADGASSAKGLGAYGFNPYHHLTEDDAGVGS--RTMLMNEWGYFW---NLTRPVLLEKSPPNMIISTFLQEVFSTGDTLPHVDNLRTTTHRESDSRSNSXXXXXXXGTTRAKFLFISRHPIANALALGKAMPGSLGNDGLPDMFEQVLHWLV 476
            R +  A+G    +GLG Y FNP  H+TED   V +  R  L N+W YFW   + ++ V LEKSPPNM+IS FLQ +F    T+P  D                            +F+FI+RHPIANA+A    +     +     +FE VLHW+V
Sbjct:  145 RGTIKANGDLDTRGLGRYMFNPDAHITEDSNLVNAENRMDLFNQWSYFWPVHDASKRVFLEKSPPNMMISRFLQALF----TVPGAD---------------------------VRFIFITRHPIANAMAHHAWLACRSQS-----IFELVLHWVV 264          
BLAST of mRNA_H-paniculata_contig5124.12434.1 vs. uniprot
Match: A0A7S3YF46_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YF46_HETAK)

HSP 1 Score: 82.4 bits (202), Expect = 1.420e-15
Identity = 59/144 (40.97%), Postives = 76/144 (52.78%), Query Frame = 3
Query:   60 KGLGAYGFNPYHHLTEDD--AGVGSRTMLMNEWGYFWNLTR--PVLLEKSPPNMIISTFLQEVFSTGDTLPHVDNLRTTTHRESDSRSNSXXXXXXXGTTRAKFLFISRHPIANALALGK--AMPGSLGNDGLPDMFEQVLHWL 473
            +GLG Y F P  H+TE+   A    R  L N++ YFW+L R  PVLLEKSPPNM+ S F+Q++FS  D  P+            D R  S           A F+F++RHPIANALA  +  A  G         +FE VLHW+
Sbjct:  169 RGLGKYAFAPEAHMTEEHHLATERHRRKLFNQFAYFWDLRRDAPVLLEKSPPNMVYSRFIQKMFS-ADLDPNAPK---------DIRKGSS----------ASFVFVTRHPIANALAHQQWTACQGMT-------VFELVLHWV 285          
BLAST of mRNA_H-paniculata_contig5124.12434.1 vs. uniprot
Match: A0A7S1TXV3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TXV3_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.360e-14
Identity = 51/130 (39.23%), Postives = 67/130 (51.54%), Query Frame = 3
Query:   24 RRSALADGASSAKGLGAYGFNPYHHLTEDDAGVGS--RTMLMNEWGYFW---NLTRPVLLEKSPPNMIISTFLQEVFSTGDTLPHVDNLRTTTHRESDSRSNSXXXXXXXGTTRAKFLFISRHPIANALA 398
            R +  A+G    +GLG Y FNP  H+TED   V +  R  L N+W YFW   + ++ V LEKSPPNM+IS FLQ +F    T+P  D                            +F+FI+RHPIANA+A
Sbjct:  145 RGTIKANGDLDTRGLGRYMFNPDAHITEDSNLVNAENRMDLFNQWSYFWPVHDASKRVFLEKSPPNMMISRFLQALF----TVPGAD---------------------------VRFIFITRHPIANAMA 243          
BLAST of mRNA_H-paniculata_contig5124.12434.1 vs. uniprot
Match: A0A7S1SEA8_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1SEA8_ALECA)

HSP 1 Score: 74.7 bits (182), Expect = 9.160e-13
Identity = 46/135 (34.07%), Postives = 70/135 (51.85%), Query Frame = 3
Query:   60 KGLGAYGFNPYHHLTEDDAGVG--SRTMLMNEWGYFWNLTRPVLLEKSPPNMIISTFLQEVFSTG-DTLPHVDNLRTTTHRESDSRSNSXXXXXXXGTTRAKFLFISRHPIANALALGKAMPGSLGNDGLPDMFE 455
            +G+G +  +P HHL+E  A V   S+  L N+W  FW+L+RPVL+EKSP N +IS FL  ++  G D+ P                              A+F+F+ RHPIA A+A  +A   ++ + G+ D+ E
Sbjct:  150 EGVGRFALHPDHHLSEASALVSKVSQQRLFNQWALFWDLSRPVLMEKSPSNGVISPFLHRLWGLGLDSSP------------------------------ARFIFLQRHPIAVAMATQRAGGLAVNDLGIADLVE 254          
BLAST of mRNA_H-paniculata_contig5124.12434.1 vs. uniprot
Match: A0A7S0X2S3_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X2S3_9CHLO)

HSP 1 Score: 70.9 bits (172), Expect = 2.150e-11
Identity = 45/116 (38.79%), Postives = 64/116 (55.17%), Query Frame = 3
Query:   63 GLGAYGFNPYH--HLTEDDAGVG--SRTMLMNEWGYFWNLTRPVLLEKSPPNMIISTFLQEVFSTGDTLPHVDNLRTTTHRESDSRSNSXXXXXXXGTTRAKFLFISRHPIANALA 398
            GLG Y   P    H TE    V   S+  L+N +G +WN+++ VL+EKSPPN I+S F Q  ++ G+             R +D+  +        GT+ A+F+F+SRHPIANALA
Sbjct:  174 GLGRYALGPEADVHWTETHEKVTEHSQARLLNRFGGYWNISKSVLVEKSPPNAILSRFFQATYNLGNK-----------GRWTDTPDDGFGG----GTSVARFIFVSRHPIANALA 274          
BLAST of mRNA_H-paniculata_contig5124.12434.1 vs. uniprot
Match: A0A7S2EEE0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EEE0_TRICV)

HSP 1 Score: 70.5 bits (171), Expect = 2.920e-11
Identity = 50/135 (37.04%), Postives = 66/135 (48.89%), Query Frame = 3
Query:   63 GLGAY--GFNPYHHLTEDDAGVGSRTM--LMNEWGYFWNLTRPVLLEKSPPNMIISTFLQEVFSTGDTLPHVDNLRTTTHRESDSRSNSXXXXXXXGTTRAKFLFISRHPIANALALGKAMPGSLGNDGLPDMFE 455
            G+G Y  G     HLTEDD  V    M  +MN +G +WNL+ PVL EKSPP  ++S FLQ ++          NL  +   E   RS +            KFLFI+RHP+ANA A    + GS     L  + +
Sbjct:  170 GVGRYALGDEKEVHLTEDDERVTPENMARIMNRFGSYWNLSTPVLTEKSPPTAVMSRFLQALY----------NLDPSGGGEGKRRSVT------------KFLFITRHPLANAYAQQDLLGGSQAGPSLETLLK 282          
BLAST of mRNA_H-paniculata_contig5124.12434.1 vs. uniprot
Match: A0A7S0CNK2_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CNK2_9EUKA)

HSP 1 Score: 70.1 bits (170), Expect = 3.780e-11
Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = 3
Query:   72 AYGFNPYHHLTEDDAGVG--SRTMLMNEWGYFWNLTRPVLLEKSPPNMIISTFLQEVFSTGDTLPHVDNLRTTTHRESDSRSNSXXXXXXXGTTRAKFLFISRHPIANALA 398
            A G   + HL ED   V   ++  L+N +GYFWN+++PVLLEKSPPN +IS FLQ + +      + D                       G +  KF+FI+RHPIANA++
Sbjct:  175 ALGKEEWVHLLEDHRLVTEYNQARLLNRYGYFWNMSKPVLLEKSPPNAVISRFLQALMNLNVPGGYQDG---------------------EGHSPVKFVFITRHPIANAMS 264          
BLAST of mRNA_H-paniculata_contig5124.12434.1 vs. uniprot
Match: A0A7S2RKY1_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKY1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 9.750e-11
Identity = 48/128 (37.50%), Postives = 63/128 (49.22%), Query Frame = 3
Query:   27 RSALADGASSAKGLGAYGFNPYH--HLTEDDAGVG--SRTMLMNEWGYFWNLTRPVLLEKSPPNMIISTFLQEVFSTGDTLPHVDNLRTTTHRESDSRSNSXXXXXXXGTTRAKFLFISRHPIANALA 398
            +S +  G +   G+G Y F      H TE+   V   S+  L+N +GY WNL++ VLLEKSPPNM +  FLQ V + G   P                            + A+F+FISRHPIANALA
Sbjct:  154 QSMMPGGQAGKGGMGKYLFAEEELVHWTEEHPLVSEESQARLLNSFGYHWNLSKRVLLEKSPPNMHLGRFLQAVLNQGAPQPR---------------------------SVARFVFISRHPIANALA 254          
BLAST of mRNA_H-paniculata_contig5124.12434.1 vs. uniprot
Match: A0A7S2V2M0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2M0_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.050e-10
Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 3
Query:   96 HLTEDDAGVGSRTM--LMNEWGYFWNLTRPVLLEKSPPNMIISTFLQEVFSTGDTLPHVDNLRTTTHRESDSRSNSXXXXXXXGTTRAKFLFISRHPIANALALGKAMPGS 422
            HL E D  V    M  L+N +G +WNLT+PVL EKSPP  ++S FLQ +++    +P +         ES+++          GT   KFLFI+RHPIAN  A    + GS
Sbjct:  122 HLIETDEKVTPSNMAKLLNRFGSYWNLTKPVLAEKSPPTAVMSRFLQALYN----VPVI---------ESEAQ----------GTHLTKFLFITRHPIANVYAHYSLVGGS 209          
BLAST of mRNA_H-paniculata_contig5124.12434.1 vs. uniprot
Match: R1E3X3_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E3X3_EMIHU)

HSP 1 Score: 67.4 bits (163), Expect = 3.670e-10
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 3
Query:   45 GASSAKGLGAYGFNPYHHLTEDD--AGVGSRTMLMNEWGYFWN---LTRPVLLEKSPPNMIISTFLQEVFS 242
            G+  A+G+G YGF+P  HLTE    A + SR  L+++WGY+W    L RP+LLEK+P NM+ +  LQ +F+
Sbjct:  151 GSPPARGVGRYGFDPGAHLTEASPLASLASRDALLSQWGYYWGEAGLERPLLLEKTPTNMLTARLLQSLFA 221          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5124.12434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1XMW6_9STRA1.030e-1537.18Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3YF46_HETAK1.420e-1540.97Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1TXV3_9STRA2.360e-1439.23Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1SEA8_ALECA9.160e-1334.07Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S0X2S3_9CHLO2.150e-1138.79Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A7S2EEE0_TRICV2.920e-1137.04Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S0CNK2_9EUKA3.780e-1137.84Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S2RKY1_9STRA9.750e-1137.50Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S2V2M0_9STRA3.050e-1039.64Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
R1E3X3_EMIHU3.670e-1046.48Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5124contigH-paniculata_contig5124:13172..13647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog2903.EOD17741
Hectar predicted targeting categoryother localisation
EggNOG OGs2E2J6@1,2S9SH@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size478
Cds size474
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930501.6700125-UTR-H-paniculata_contig5124:13171..131731622930501.6700125-UTR-H-paniculata_contig5124:13171..13173Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5124 13172..13173 +
1691481321.170455-UTR-H-paniculata_contig5124:13171..131731691481321.170455-UTR-H-paniculata_contig5124:13171..13173Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5124 13172..13173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930501.685822-CDS-H-paniculata_contig5124:13173..136471622930501.685822-CDS-H-paniculata_contig5124:13173..13647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5124 13174..13647 +
1691481321.1790867-CDS-H-paniculata_contig5124:13173..136471691481321.1790867-CDS-H-paniculata_contig5124:13173..13647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5124 13174..13647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5124.12434.1prot_H-paniculata_contig5124.12434.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5124 13174..13647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5124.12434.1

>prot_H-paniculata_contig5124.12434.1 ID=prot_H-paniculata_contig5124.12434.1|Name=mRNA_H-paniculata_contig5124.12434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
MSRSNTKRRSALADGASSAKGLGAYGFNPYHHLTEDDAGVGSRTMLMNEW
GYFWNLTRPVLLEKSPPNMIISTFLQEVFSTGDTLPHVDNLRTTTHRESD
SRSNSGRSSSGRGTTRAKFLFISRHPIANALALGKAMPGSLGNDGLPDMF
EQVLHWLV
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mRNA from alignment at H-paniculata_contig5124:13172..13647+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5124.12434.1 ID=mRNA_H-paniculata_contig5124.12434.1|Name=mRNA_H-paniculata_contig5124.12434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=476bp|location=Sequence derived from alignment at H-paniculata_contig5124:13172..13647+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATGAGTAGGTCAAACACCAAACGCCGCTCAGCCCTCGCTGACGGAGCT TCGAGTGCGAAGGGCCTAGGAGCCTACGGCTTCAATCCCTACCACCACTT GACGGAAGACGACGCAGGTGTGGGATCCAGGACGATGCTGATGAACGAGT GGGGGTATTTCTGGAACTTGACCAGACCCGTGCTGCTGGAAAAAAGTCCC CCCAACATGATAATTTCAACCTTTCTGCAAGAGGTTTTTTCTACCGGTGA CACGTTGCCCCATGTGGACAATCTCCGAACTACGACTCATCGTGAAAGCG ACAGCCGCAGCAACAGTGGTAGGAGCAGTAGCGGTCGTGGTACCACGAGG GCCAAGTTTCTGTTCATCAGCCGACACCCCATCGCCAACGCATTGGCTCT GGGCAAAGCTATGCCAGGCAGCCTGGGGAACGACGGTCTGCCCGATATGT TCGAGCAGGTGCTCCACTGGTTGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig5124:13172..13647+

>mRNA_H-paniculata_contig5124.12434.1 ID=mRNA_H-paniculata_contig5124.12434.1|Name=mRNA_H-paniculata_contig5124.12434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig5124:13172..13647+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTAGGTCAAACACCAAACGCCGCTCAGCCCTCGCTGACGGAGCTTC
GAGTGCGAAGGGCCTAGGAGCCTACGGCTTCAATCCCTACCACCACTTGA
CGGAAGACGACGCAGGTGTGGGATCCAGGACGATGCTGATGAACGAGTGG
GGGTATTTCTGGAACTTGACCAGACCCGTGCTGCTGGAAAAAAGTCCCCC
CAACATGATAATTTCAACCTTTCTGCAAGAGGTTTTTTCTACCGGTGACA
CGTTGCCCCATGTGGACAATCTCCGAACTACGACTCATCGTGAAAGCGAC
AGCCGCAGCAACAGTGGTAGGAGCAGTAGCGGTCGTGGTACCACGAGGGC
CAAGTTTCTGTTCATCAGCCGACACCCCATCGCCAACGCATTGGCTCTGG
GCAAAGCTATGCCAGGCAGCCTGGGGAACGACGGTCTGCCCGATATGTTC
GAGCAGGTGCTCCACTGGTTGGTGATGAGTAGGTCAAACACCAAACGCCG
CTCAGCCCTCGCTGACGGAGCTTCGAGTGCGAAGGGCCTAGGAGCCTACG
GCTTCAATCCCTACCACCACTTGACGGAAGACGACGCAGGTGTGGGATCC
AGGACGATGCTGATGAACGAGTGGGGGTATTTCTGGAACTTGACCAGACC
CGTGCTGCTGGAAAAAAGTCCCCCCAACATGATAATTTCAACCTTTCTGC
AAGAGGTTTTTTCTACCGGTGACACGTTGCCCCATGTGGACAATCTCCGA
ACTACGACTCATCGTGAAAGCGACAGCCGCAGCAACAGTGGTAGGAGCAG
TAGCGGTCGTGGTACCACGAGGGCCAAGTTTCTGTTCATCAGCCGACACC
CCATCGCCAACGCATTGGCTCTGGGCAAAGCTATGCCAGGCAGCCTGGGG
AACGACGGTCTGCCCGATATGTTCGAGCAGGTGCTCCACTGGTTGGTG
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