mRNA_H-paniculata_contig5122.12432.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5122.12432.1
Unique NamemRNA_H-paniculata_contig5122.12432.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5122.12432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5122contigH-paniculata_contig5122:1253..1597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size306
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930501.3977602-CDS-H-paniculata_contig5122:1252..15581622930501.3977602-CDS-H-paniculata_contig5122:1252..1558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5122 1253..1558 +
1691481321.0750263-CDS-H-paniculata_contig5122:1252..15581691481321.0750263-CDS-H-paniculata_contig5122:1252..1558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5122 1253..1558 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930501.421613-UTR-H-paniculata_contig5122:1558..15971622930501.421613-UTR-H-paniculata_contig5122:1558..1597Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5122 1559..1597 +
1691481321.0862093-UTR-H-paniculata_contig5122:1558..15971691481321.0862093-UTR-H-paniculata_contig5122:1558..1597Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5122 1559..1597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5122.12432.1prot_H-paniculata_contig5122.12432.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5122 1253..1558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5122.12432.1

>prot_H-paniculata_contig5122.12432.1 ID=prot_H-paniculata_contig5122.12432.1|Name=mRNA_H-paniculata_contig5122.12432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MANWEVRTSDEFSLRGGRLALPTLTSLSGSFFIQWTGPFIHEFYLSTILA
SFTQDQLIPGFSLARNVAPSISKAHKDNLCPWGFELTISFCTESSLVVKS
V*
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mRNA from alignment at H-paniculata_contig5122:1253..1597+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5122.12432.1 ID=mRNA_H-paniculata_contig5122.12432.1|Name=mRNA_H-paniculata_contig5122.12432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at H-paniculata_contig5122:1253..1597+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTAATTGGGAGGTTCGAACAAGCGACGAATTTTCGCTCCGAGGAGG
TCGACTCGCCTTGCCAACCCTAACGTCACTTTCTGGTTCGTTTTTTATTC
AATGGACAGGTCCATTTATTCACGAGTTTTATCTCTCCACGATACTTGCA
TCCTTCACTCAGGACCAACTTATTCCGGGTTTTTCTCTCGCTAGAAATGT
CGCACCTTCCATATCGAAAGCACACAAAGACAATCTGTGTCCTTGGGGGT
TCGAACTCACGATTAGTTTTTGTACAGAAAGCAGCCTGGTGGTAAAGTCA
GTGTGACCTACCGTAACTCCAGCTGTTGATGATTCCGGACGGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig5122:1253..1597+

>mRNA_H-paniculata_contig5122.12432.1 ID=mRNA_H-paniculata_contig5122.12432.1|Name=mRNA_H-paniculata_contig5122.12432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig5122:1253..1597+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTAATTGGGAGGTTCGAACAAGCGACGAATTTTCGCTCCGAGGAGG
TCGACTCGCCTTGCCAACCCTAACGTCACTTTCTGGTTCGTTTTTTATTC
AATGGACAGGTCCATTTATTCACGAGTTTTATCTCTCCACGATACTTGCA
TCCTTCACTCAGGACCAACTTATTCCGGGTTTTTCTCTCGCTAGAAATGT
CGCACCTTCCATATCGAAAGCACACAAAGACAATCTGTGTCCTTGGGGGT
TCGAACTCACGATTAGTTTTTGTACAGAAAGCAGCCTGGTGGTAAAGTCA
GTGTGAATGGCTAATTGGGAGGTTCGAACAAGCGACGAATTTTCGCTCCG
AGGAGGTCGACTCGCCTTGCCAACCCTAACGTCACTTTCTGGTTCGTTTT
TTATTCAATGGACAGGTCCATTTATTCACGAGTTTTATCTCTCCACGATA
CTTGCATCCTTCACTCAGGACCAACTTATTCCGGGTTTTTCTCTCGCTAG
AAATGTCGCACCTTCCATATCGAAAGCACACAAAGACAATCTGTGTCCTT
GGGGGTTCGAACTCACGATTAGTTTTTGTACAGAAAGCAGCCTGGTGGTA
AAGTCAGTGTGA
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