mRNA_H-paniculata_contig51219.12431.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51219.12431.1
Unique NamemRNA_H-paniculata_contig51219.12431.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig51219.12431.1 vs. uniprot
Match: D7FTT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT6_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.300e-14
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 MLQAGEEARYRQSLARTRGECAVAIGNFLPTLKKRLFLAVDVTGPVR 141
            ++QAG +AR RQ ++RTRGEC  A+ NFLP L+KRLFLAVDVTGPVR
Sbjct:   54 LVQAGHDARRRQCMSRTRGECVAALANFLPALRKRLFLAVDVTGPVR 100
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BLAST of mRNA_H-paniculata_contig51219.12431.1 vs. uniprot
Match: A0A6H5L882_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L882_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 8.690e-14
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 MLQAGEEARYRQSLARTRGECAVAIGNFLPTLKKRLFLAVDVTGPVR 141
            ++QAG +AR RQ ++RTRGEC  A+ NFLP L+KRLFLAVDVTGPVR
Sbjct:   54 LVQAGRDARRRQCMSRTRGECVAALANFLPALRKRLFLAVDVTGPVR 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51219.12431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTT6_ECTSI1.300e-1470.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L882_9PHAE8.690e-1470.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51219contigH-paniculata_contig51219:863..1003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930501.3396225-CDS-H-paniculata_contig51219:862..10031622930501.3396225-CDS-H-paniculata_contig51219:862..1003Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51219 863..1003 +
1691481321.0548058-CDS-H-paniculata_contig51219:862..10031691481321.0548058-CDS-H-paniculata_contig51219:862..1003Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51219 863..1003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51219.12431.1prot_H-paniculata_contig51219.12431.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51219 863..1003 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51219.12431.1

>prot_H-paniculata_contig51219.12431.1 ID=prot_H-paniculata_contig51219.12431.1|Name=mRNA_H-paniculata_contig51219.12431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
MLQAGEEARYRQSLARTRGECAVAIGNFLPTLKKRLFLAVDVTGPVR
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mRNA from alignment at H-paniculata_contig51219:863..1003+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51219.12431.1 ID=mRNA_H-paniculata_contig51219.12431.1|Name=mRNA_H-paniculata_contig51219.12431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at H-paniculata_contig51219:863..1003+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTACAGGCGGGTGAGGAGGCTAGATACCGACAGAGCCTGGCCAGAAC
GCGGGGCGAATGCGCCGTGGCCATCGGGAATTTCTTACCTACGCTAAAGA
AGCGTCTATTTCTAGCTGTGGACGTCACAGGCCCGGTGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig51219:863..1003+

>mRNA_H-paniculata_contig51219.12431.1 ID=mRNA_H-paniculata_contig51219.12431.1|Name=mRNA_H-paniculata_contig51219.12431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig51219:863..1003+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTACAGGCGGGTGAGGAGGCTAGATACCGACAGAGCCTGGCCAGAAC
GCGGGGCGAATGCGCCGTGGCCATCGGGAATTTCTTACCTACGCTAAAGA
AGCGTCTATTTCTAGCTGTGGACGTCACAGGCCCGGTGAGGATGCTACAG
GCGGGTGAGGAGGCTAGATACCGACAGAGCCTGGCCAGAACGCGGGGCGA
ATGCGCCGTGGCCATCGGGAATTTCTTACCTACGCTAAAGAAGCGTCTAT
TTCTAGCTGTGGACGTCACAGGCCCGGTGAGG
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