mRNA_H-paniculata_contig5121.12430.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5121.12430.1
Unique NamemRNA_H-paniculata_contig5121.12430.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5121.12430.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 6.510e-26
Identity = 63/146 (43.15%), Postives = 87/146 (59.59%), Query Frame = 1
Query:    7 RYCITNLGNVSLFLSMEVTCDKNSGTL---QPFQVHSFLKRFGMKEANPAKHPASGKELQQTT-DDTQLDEQRTKQYQAIVGSLIILTRFIRFGICYSVSQAARFMTKPSQEQVVAAKRILRYLRGKPDVRITFCEDSFELVGFSD 432
            R+ +T+LG  SL L ME+  D+ + TL   Q     S L+RFGM  + P   P  G E+     +DT LDE+ T++YQ IVGSL+ + + +R+ I Y+  Q AR M KPS+  +VAAK  LRYL G  D  IT+ +  F+L  FSD
Sbjct:  142 RFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSD 287          
BLAST of mRNA_H-paniculata_contig5121.12430.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.390e-25
Identity = 63/146 (43.15%), Postives = 87/146 (59.59%), Query Frame = 1
Query:    7 RYCITNLGNVSLFLSMEVTCDKNSGTL---QPFQVHSFLKRFGMKEANPAKHPASGKELQQTT-DDTQLDEQRTKQYQAIVGSLIILTRFIRFGICYSVSQAARFMTKPSQEQVVAAKRILRYLRGKPDVRITFCEDSFELVGFSD 432
            R+ +T+LG  SL L ME+  D+ + TL   Q     S L+RFGM  + P   P  G E+     +DT LDE+ T++YQ IVGSL+ + + +R+ I Y+  Q AR M KPS+  +VAAK  LRYL G  D  IT+ +  F+L  FSD
Sbjct:  702 RFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSD 847          
BLAST of mRNA_H-paniculata_contig5121.12430.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 6.280e-25
Identity = 62/146 (42.47%), Postives = 87/146 (59.59%), Query Frame = 1
Query:    7 RYCITNLGNVSLFLSMEVTCDKNSGTL---QPFQVHSFLKRFGMKEANPAKHPASGKELQQTT-DDTQLDEQRTKQYQAIVGSLIILTRFIRFGICYSVSQAARFMTKPSQEQVVAAKRILRYLRGKPDVRITFCEDSFELVGFSD 432
            R+ +T+LG  SL L ME+  D+ + TL   Q     S L+RFG+  + P   P  G E+     +DT LDE+ T++YQ IVGSL+ + + +R+ I Y+  Q AR M KPS+  +VAAK  LRYL G  D  IT+ +  F+L  FSD
Sbjct: 1371 RFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSD 1516          
BLAST of mRNA_H-paniculata_contig5121.12430.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 8.010e-21
Identity = 54/148 (36.49%), Postives = 81/148 (54.73%), Query Frame = 1
Query:    1 MDRYCITNLGNVSLFLSMEVTCDKNSGTLQPFQ---VHSFLKRFGMKEANPAKHPASGKELQ-QTTDDTQLDEQRTKQYQAIVGSLIILTRFIRFGICYSVSQAARFMTKPSQEQVVAAKRILRYLRGKPDVRITFCEDSFELVGFSD 432
            MD + +T++G V   + +EV  D   GTL   Q       L+R+GM++ANP   P  G EL  +   D  L  +  +++Q I GSL+ L +  R+ + Y+V Q  R    P+Q  + AAK +LRYLRG PD+ I + +  F L  F+D
Sbjct:    1 MDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEEKQRFQTITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTD 148          
BLAST of mRNA_H-paniculata_contig5121.12430.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.210e-20
Identity = 57/148 (38.51%), Postives = 80/148 (54.05%), Query Frame = 1
Query:    1 MDRYCITNLGNVSLFLSMEVTCDKNSGTLQPFQ---VHSFLKRFGMKEANPAKHPASGKELQQTTDDTQLDEQRTKQ-YQAIVGSLIILTRFIRFGICYSVSQAARFMTKPSQEQVVAAKRILRYLRGKPDVRITFCEDSFELVGFSD 432
            MD + +T++G V   + +EV  D   GTL   Q       L+R+GM++ANP   P  G EL       QL     KQ +QAI GSL+ L +  R+ + Y+V Q  R    P+Q  + AAK +LRYLRG PD+ I + +  F L  F+D
Sbjct: 1217 MDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTD 1364          
BLAST of mRNA_H-paniculata_contig5121.12430.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.100e-20
Identity = 57/148 (38.51%), Postives = 80/148 (54.05%), Query Frame = 1
Query:    1 MDRYCITNLGNVSLFLSMEVTCDKNSGTLQPFQ---VHSFLKRFGMKEANPAKHPASGKELQQTTDDTQLDEQRTKQ-YQAIVGSLIILTRFIRFGICYSVSQAARFMTKPSQEQVVAAKRILRYLRGKPDVRITFCEDSFELVGFSD 432
            MD + +T++G V   + +EV  D   GTL   Q       L+R+GM++ANP   P  G EL       QL     KQ +QAI GSL+ L +  R+ + Y+V Q  R    P+Q  + AAK +LRYLRG PD+ I + +  F L  F+D
Sbjct:  438 MDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTD 585          
BLAST of mRNA_H-paniculata_contig5121.12430.1 vs. uniprot
Match: A0A6H5L0J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J0_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 5.690e-20
Identity = 58/148 (39.19%), Postives = 80/148 (54.05%), Query Frame = 1
Query:    1 MDRYCITNLGNVSLFLSMEVTCDKNSGTLQPFQ---VHSFLKRFGMKEANPAKHPASGKELQQTTDDTQLDEQRTKQ-YQAIVGSLIILTRFIRFGICYSVSQAARFMTKPSQEQVVAAKRILRYLRGKPDVRITFCEDSFELVGFSD 432
            MD + +T++G V   + +EV  D   GTL   Q       L+R+GM++ANP   P  G EL       QL     KQ +QAI GSL+ L +  R+ + Y+V Q  R   KP+Q  + AAK +LRYLRG+PD+ I   +  F L  F D
Sbjct:  683 MDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACAKPAQVHMAAAKHLLRYLRGRPDLPIVHKKGQFILSCFID 830          
BLAST of mRNA_H-paniculata_contig5121.12430.1 vs. uniprot
Match: A0A6H5L4B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4B4_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 5.900e-20
Identity = 57/148 (38.51%), Postives = 79/148 (53.38%), Query Frame = 1
Query:    1 MDRYCITNLGNVSLFLSMEVTCDKNSGTLQPFQ---VHSFLKRFGMKEANPAKHPASGKELQQTTDDTQLDEQRTKQ-YQAIVGSLIILTRFIRFGICYSVSQAARFMTKPSQEQVVAAKRILRYLRGKPDVRITFCEDSFELVGFSD 432
            MD + +T +G V   + +EV  D   GTL   Q       L+R+GM++ANP   P  G EL       QL     KQ +QAI GSL+ L +  R+ + Y+V Q  R    P+Q  + AAK +LRYLRG PD+ I + +  F L  F+D
Sbjct: 1130 MDSFEMTEMGEVMRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTD 1277          
BLAST of mRNA_H-paniculata_contig5121.12430.1 vs. uniprot
Match: UPI000809E574 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Phaseolus angularis TaxID=3914 RepID=UPI000809E574)

HSP 1 Score: 85.5 bits (210), Expect = 2.350e-18
Identity = 60/147 (40.82%), Postives = 81/147 (55.10%), Query Frame = 1
Query:   16 ITNLGNVSLFLSMEVTCDKNSGTL-QPFQVHSFLKRFGMKEANPAKHPASGKELQQTTDDTQLDEQRTKQYQAIVGSLIILTRFIRFGICYSVSQAARFMTKPSQEQVVAAKRILRYLRGKPDVRITFC-------EDSFELVGFSD 432
            +T+LG +S FL ME T  K    L Q   V   L RF M E NPAK P     L+ T D+ + + + T  ++ IVGSL  L    R  + +SV   +RFM KP +  ++AAKR+LRY++G PD  I F        E+  ELVGF+D
Sbjct:    1 MTDLGKLSYFLGMEFTYTKAGLILHQKKYVKELLARFNMSECNPAKSPLE-MNLRLTNDENEAEAEET-MFKQIVGSLRFLCNS-RPDLSFSVGLISRFMGKPKKTHMLAAKRVLRYVKGTPDFGILFPVGRRKADEEFLELVGFTD 144          
BLAST of mRNA_H-paniculata_contig5121.12430.1 vs. uniprot
Match: A0A6H5JW03_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW03_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 4.510e-18
Identity = 55/148 (37.16%), Postives = 77/148 (52.03%), Query Frame = 1
Query:    1 MDRYCITNLGNVSLFLSMEVTCDKNSGTLQPFQ---VHSFLKRFGMKEANPAKHPASGKELQQTTDDTQLDEQRTKQ-YQAIVGSLIILTRFIRFGICYSVSQAARFMTKPSQEQVVAAKRILRYLRGKPDVRITFCEDSFELVGFSD 432
            MD + +T++G V   + + V  D   GTL   Q        +R+GM++ANP   P  G EL       QL     KQ +QAI GSL+ L +  R+   Y+V Q  R    P+Q  + AAK +LRYLRG PD+ I + +  F L  F+D
Sbjct:  127 MDSFEMTDMGEVKRVIGIAVQRDYELGTLAISQGPYARDIQQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDPSYAVHQLKRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTD 274          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5121.12430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE6.510e-2643.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE2.390e-2543.15Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE6.280e-2542.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC04_9PHAE8.010e-2136.49Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHG5_9PHAE3.210e-2038.51Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5JF46_9PHAE4.100e-2038.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L0J0_9PHAE5.690e-2039.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4B4_9PHAE5.900e-2038.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000809E5742.350e-1840.82uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A6H5JW03_9PHAE4.510e-1837.16Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5121contigH-paniculata_contig5121:13579..14010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score80.1
Seed ortholog evalue9.3e-13
Seed eggNOG ortholog28564.XP_002488419.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Integrase core domain
EggNOG OGs20JX9@147545,38W9N@33154,3Q0HF@4751,3RA3H@4890,3SA39@5042,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelEurotiales
Best eggNOG OGNA|NA|NA
Exons1
Model size432
Cds size432
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930501.2997925-CDS-H-paniculata_contig5121:13578..140101622930501.2997925-CDS-H-paniculata_contig5121:13578..14010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5121 13579..14010 -
1691481321.0393488-CDS-H-paniculata_contig5121:13578..140101691481321.0393488-CDS-H-paniculata_contig5121:13578..14010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5121 13579..14010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5121.12430.1prot_H-paniculata_contig5121.12430.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5121 13579..14010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5121.12430.1

>prot_H-paniculata_contig5121.12430.1 ID=prot_H-paniculata_contig5121.12430.1|Name=mRNA_H-paniculata_contig5121.12430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
MDRYCITNLGNVSLFLSMEVTCDKNSGTLQPFQVHSFLKRFGMKEANPAK
HPASGKELQQTTDDTQLDEQRTKQYQAIVGSLIILTRFIRFGICYSVSQA
ARFMTKPSQEQVVAAKRILRYLRGKPDVRITFCEDSFELVGFSD
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mRNA from alignment at H-paniculata_contig5121:13579..14010-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5121.12430.1 ID=mRNA_H-paniculata_contig5121.12430.1|Name=mRNA_H-paniculata_contig5121.12430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=432bp|location=Sequence derived from alignment at H-paniculata_contig5121:13579..14010- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACAGATATTGCATCACGAACTTAGGCAACGTCTCATTATTTCTTAG CATGGAGGTCACGTGTGACAAGAACTCTGGCACACTGCAGCCGTTCCAAG TACATTCTTTTCTAAAACGATTTGGAATGAAAGAGGCTAATCCAGCCAAA CACCCAGCATCAGGAAAGGAACTGCAGCAAACCACGGACGACACTCAGTT AGACGAGCAAAGAACCAAGCAGTATCAAGCTATCGTGGGGAGCCTCATTA TCCTCACTCGTTTTATAAGGTTTGGTATCTGCTACAGCGTGAGCCAAGCA GCTCGCTTCATGACTAAGCCTTCCCAGGAACAGGTGGTGGCTGCAAAGCG CATTCTACGATATCTGCGTGGGAAACCTGATGTTCGCATAACATTCTGTG AGGACAGCTTTGAGCTCGTGGGCTTTTCAGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig5121:13579..14010-

>mRNA_H-paniculata_contig5121.12430.1 ID=mRNA_H-paniculata_contig5121.12430.1|Name=mRNA_H-paniculata_contig5121.12430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig5121:13579..14010- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACAGATATTGCATCACGAACTTAGGCAACGTCTCATTATTTCTTAG
CATGGAGGTCACGTGTGACAAGAACTCTGGCACACTGCAGCCGTTCCAAG
TACATTCTTTTCTAAAACGATTTGGAATGAAAGAGGCTAATCCAGCCAAA
CACCCAGCATCAGGAAAGGAACTGCAGCAAACCACGGACGACACTCAGTT
AGACGAGCAAAGAACCAAGCAGTATCAAGCTATCGTGGGGAGCCTCATTA
TCCTCACTCGTTTTATAAGGTTTGGTATCTGCTACAGCGTGAGCCAAGCA
GCTCGCTTCATGACTAAGCCTTCCCAGGAACAGGTGGTGGCTGCAAAGCG
CATTCTACGATATCTGCGTGGGAAACCTGATGTTCGCATAACATTCTGTG
AGGACAGCTTTGAGCTCGTGGGCTTTTCAGACATGGACAGATATTGCATC
ACGAACTTAGGCAACGTCTCATTATTTCTTAGCATGGAGGTCACGTGTGA
CAAGAACTCTGGCACACTGCAGCCGTTCCAAGTACATTCTTTTCTAAAAC
GATTTGGAATGAAAGAGGCTAATCCAGCCAAACACCCAGCATCAGGAAAG
GAACTGCAGCAAACCACGGACGACACTCAGTTAGACGAGCAAAGAACCAA
GCAGTATCAAGCTATCGTGGGGAGCCTCATTATCCTCACTCGTTTTATAA
GGTTTGGTATCTGCTACAGCGTGAGCCAAGCAGCTCGCTTCATGACTAAG
CCTTCCCAGGAACAGGTGGTGGCTGCAAAGCGCATTCTACGATATCTGCG
TGGGAAACCTGATGTTCGCATAACATTCTGTGAGGACAGCTTTGAGCTCG
TGGGCTTTTCAGAC
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