mRNA_H-paniculata_contig5121.12430.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5121.12430.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 110 bits (276), Expect = 6.510e-26 Identity = 63/146 (43.15%), Postives = 87/146 (59.59%), Query Frame = 1
Query: 7 RYCITNLGNVSLFLSMEVTCDKNSGTL---QPFQVHSFLKRFGMKEANPAKHPASGKELQQTT-DDTQLDEQRTKQYQAIVGSLIILTRFIRFGICYSVSQAARFMTKPSQEQVVAAKRILRYLRGKPDVRITFCEDSFELVGFSD 432
R+ +T+LG SL L ME+ D+ + TL Q S L+RFGM + P P G E+ +DT LDE+ T++YQ IVGSL+ + + +R+ I Y+ Q AR M KPS+ +VAAK LRYL G D IT+ + F+L FSD
Sbjct: 142 RFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSD 287
BLAST of mRNA_H-paniculata_contig5121.12430.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 110 bits (275), Expect = 2.390e-25 Identity = 63/146 (43.15%), Postives = 87/146 (59.59%), Query Frame = 1
Query: 7 RYCITNLGNVSLFLSMEVTCDKNSGTL---QPFQVHSFLKRFGMKEANPAKHPASGKELQQTT-DDTQLDEQRTKQYQAIVGSLIILTRFIRFGICYSVSQAARFMTKPSQEQVVAAKRILRYLRGKPDVRITFCEDSFELVGFSD 432
R+ +T+LG SL L ME+ D+ + TL Q S L+RFGM + P P G E+ +DT LDE+ T++YQ IVGSL+ + + +R+ I Y+ Q AR M KPS+ +VAAK LRYL G D IT+ + F+L FSD
Sbjct: 702 RFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSD 847
BLAST of mRNA_H-paniculata_contig5121.12430.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 109 bits (272), Expect = 6.280e-25 Identity = 62/146 (42.47%), Postives = 87/146 (59.59%), Query Frame = 1
Query: 7 RYCITNLGNVSLFLSMEVTCDKNSGTL---QPFQVHSFLKRFGMKEANPAKHPASGKELQQTT-DDTQLDEQRTKQYQAIVGSLIILTRFIRFGICYSVSQAARFMTKPSQEQVVAAKRILRYLRGKPDVRITFCEDSFELVGFSD 432
R+ +T+LG SL L ME+ D+ + TL Q S L+RFG+ + P P G E+ +DT LDE+ T++YQ IVGSL+ + + +R+ I Y+ Q AR M KPS+ +VAAK LRYL G D IT+ + F+L FSD
Sbjct: 1371 RFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSD 1516
BLAST of mRNA_H-paniculata_contig5121.12430.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 8.010e-21 Identity = 54/148 (36.49%), Postives = 81/148 (54.73%), Query Frame = 1
Query: 1 MDRYCITNLGNVSLFLSMEVTCDKNSGTLQPFQ---VHSFLKRFGMKEANPAKHPASGKELQ-QTTDDTQLDEQRTKQYQAIVGSLIILTRFIRFGICYSVSQAARFMTKPSQEQVVAAKRILRYLRGKPDVRITFCEDSFELVGFSD 432
MD + +T++G V + +EV D GTL Q L+R+GM++ANP P G EL + D L + +++Q I GSL+ L + R+ + Y+V Q R P+Q + AAK +LRYLRG PD+ I + + F L F+D
Sbjct: 1 MDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEEKQRFQTITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTD 148
BLAST of mRNA_H-paniculata_contig5121.12430.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 3.210e-20 Identity = 57/148 (38.51%), Postives = 80/148 (54.05%), Query Frame = 1
Query: 1 MDRYCITNLGNVSLFLSMEVTCDKNSGTLQPFQ---VHSFLKRFGMKEANPAKHPASGKELQQTTDDTQLDEQRTKQ-YQAIVGSLIILTRFIRFGICYSVSQAARFMTKPSQEQVVAAKRILRYLRGKPDVRITFCEDSFELVGFSD 432
MD + +T++G V + +EV D GTL Q L+R+GM++ANP P G EL QL KQ +QAI GSL+ L + R+ + Y+V Q R P+Q + AAK +LRYLRG PD+ I + + F L F+D
Sbjct: 1217 MDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTD 1364
BLAST of mRNA_H-paniculata_contig5121.12430.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 4.100e-20 Identity = 57/148 (38.51%), Postives = 80/148 (54.05%), Query Frame = 1
Query: 1 MDRYCITNLGNVSLFLSMEVTCDKNSGTLQPFQ---VHSFLKRFGMKEANPAKHPASGKELQQTTDDTQLDEQRTKQ-YQAIVGSLIILTRFIRFGICYSVSQAARFMTKPSQEQVVAAKRILRYLRGKPDVRITFCEDSFELVGFSD 432
MD + +T++G V + +EV D GTL Q L+R+GM++ANP P G EL QL KQ +QAI GSL+ L + R+ + Y+V Q R P+Q + AAK +LRYLRG PD+ I + + F L F+D
Sbjct: 438 MDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTD 585
BLAST of mRNA_H-paniculata_contig5121.12430.1 vs. uniprot
Match: A0A6H5L0J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J0_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 5.690e-20 Identity = 58/148 (39.19%), Postives = 80/148 (54.05%), Query Frame = 1
Query: 1 MDRYCITNLGNVSLFLSMEVTCDKNSGTLQPFQ---VHSFLKRFGMKEANPAKHPASGKELQQTTDDTQLDEQRTKQ-YQAIVGSLIILTRFIRFGICYSVSQAARFMTKPSQEQVVAAKRILRYLRGKPDVRITFCEDSFELVGFSD 432
MD + +T++G V + +EV D GTL Q L+R+GM++ANP P G EL QL KQ +QAI GSL+ L + R+ + Y+V Q R KP+Q + AAK +LRYLRG+PD+ I + F L F D
Sbjct: 683 MDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACAKPAQVHMAAAKHLLRYLRGRPDLPIVHKKGQFILSCFID 830
BLAST of mRNA_H-paniculata_contig5121.12430.1 vs. uniprot
Match: A0A6H5L4B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4B4_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 5.900e-20 Identity = 57/148 (38.51%), Postives = 79/148 (53.38%), Query Frame = 1
Query: 1 MDRYCITNLGNVSLFLSMEVTCDKNSGTLQPFQ---VHSFLKRFGMKEANPAKHPASGKELQQTTDDTQLDEQRTKQ-YQAIVGSLIILTRFIRFGICYSVSQAARFMTKPSQEQVVAAKRILRYLRGKPDVRITFCEDSFELVGFSD 432
MD + +T +G V + +EV D GTL Q L+R+GM++ANP P G EL QL KQ +QAI GSL+ L + R+ + Y+V Q R P+Q + AAK +LRYLRG PD+ I + + F L F+D
Sbjct: 1130 MDSFEMTEMGEVMRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTD 1277
BLAST of mRNA_H-paniculata_contig5121.12430.1 vs. uniprot
Match: UPI000809E574 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Phaseolus angularis TaxID=3914 RepID=UPI000809E574) HSP 1 Score: 85.5 bits (210), Expect = 2.350e-18 Identity = 60/147 (40.82%), Postives = 81/147 (55.10%), Query Frame = 1
Query: 16 ITNLGNVSLFLSMEVTCDKNSGTL-QPFQVHSFLKRFGMKEANPAKHPASGKELQQTTDDTQLDEQRTKQYQAIVGSLIILTRFIRFGICYSVSQAARFMTKPSQEQVVAAKRILRYLRGKPDVRITFC-------EDSFELVGFSD 432
+T+LG +S FL ME T K L Q V L RF M E NPAK P L+ T D+ + + + T ++ IVGSL L R + +SV +RFM KP + ++AAKR+LRY++G PD I F E+ ELVGF+D
Sbjct: 1 MTDLGKLSYFLGMEFTYTKAGLILHQKKYVKELLARFNMSECNPAKSPLE-MNLRLTNDENEAEAEET-MFKQIVGSLRFLCNS-RPDLSFSVGLISRFMGKPKKTHMLAAKRVLRYVKGTPDFGILFPVGRRKADEEFLELVGFTD 144
BLAST of mRNA_H-paniculata_contig5121.12430.1 vs. uniprot
Match: A0A6H5JW03_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW03_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 4.510e-18 Identity = 55/148 (37.16%), Postives = 77/148 (52.03%), Query Frame = 1
Query: 1 MDRYCITNLGNVSLFLSMEVTCDKNSGTLQPFQ---VHSFLKRFGMKEANPAKHPASGKELQQTTDDTQLDEQRTKQ-YQAIVGSLIILTRFIRFGICYSVSQAARFMTKPSQEQVVAAKRILRYLRGKPDVRITFCEDSFELVGFSD 432
MD + +T++G V + + V D GTL Q +R+GM++ANP P G EL QL KQ +QAI GSL+ L + R+ Y+V Q R P+Q + AAK +LRYLRG PD+ I + + F L F+D
Sbjct: 127 MDSFEMTDMGEVKRVIGIAVQRDYELGTLAISQGPYARDIQQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDPSYAVHQLKRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTD 274 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5121.12430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5121.12430.1 >prot_H-paniculata_contig5121.12430.1 ID=prot_H-paniculata_contig5121.12430.1|Name=mRNA_H-paniculata_contig5121.12430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp MDRYCITNLGNVSLFLSMEVTCDKNSGTLQPFQVHSFLKRFGMKEANPAKback to top mRNA from alignment at H-paniculata_contig5121:13579..14010- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5121.12430.1 ID=mRNA_H-paniculata_contig5121.12430.1|Name=mRNA_H-paniculata_contig5121.12430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=432bp|location=Sequence derived from alignment at H-paniculata_contig5121:13579..14010- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5121:13579..14010- >mRNA_H-paniculata_contig5121.12430.1 ID=mRNA_H-paniculata_contig5121.12430.1|Name=mRNA_H-paniculata_contig5121.12430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig5121:13579..14010- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |