mRNA_H-paniculata_contig11951.1242.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11951.1242.1
Unique NamemRNA_H-paniculata_contig11951.1242.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig11951.1242.1 vs. uniprot
Match: A0A835ZBI9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBI9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 4.150e-17
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   55 ASAKWIRPPQVQHILNYKACHSAIRFGDLLSRPECVDLIQRLSVCERPFCCAHGRPSVVPL 237
            A  + + P  + HIL YKACH AIRFGDLLS+ +C +L+  LS C  PF CAHGRPS+VPL
Sbjct:   13 APVRGVIPSTIHHILKYKACHGAIRFGDLLSQEQCCELVHGLSQCRLPFQCAHGRPSMVPL 73
[Close]
BLAST of mRNA_H-paniculata_contig11951.1242.1 vs. uniprot
Match: A0A0X8HSQ0_9SACH (HEL134Wp n=1 Tax=Eremothecium sinecaudum TaxID=45286 RepID=A0A0X8HSQ0_9SACH)

HSP 1 Score: 78.6 bits (192), Expect = 1.860e-13
Identity = 43/92 (46.74%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:    4 QDLLGFLDHLRESVLPGA-----SAKWIR-----PPQVQHILNYKACHSAIRFGDLLSRPECVDLIQRLSVCERPFCCAHGRPSVVPLCVLG 249
            +DL   L     S+LP       S +W +     P  +  I N KAC SAI FGD L+R ECV L++RLS+C  PF CAHGRPSV+P+  LG
Sbjct:  599 RDLEAHLLVRSSSILPNPITDFNSLQWWKCKNAIPRLLMEIFNSKACRSAIMFGDFLTREECVQLVERLSLCNMPFQCAHGRPSVIPILELG 690
[Close]
BLAST of mRNA_H-paniculata_contig11951.1242.1 vs. uniprot
Match: A0A383W9Q8_TETOB (MutL_C domain-containing protein (Fragment) n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W9Q8_TETOB)

HSP 1 Score: 76.6 bits (187), Expect = 9.310e-13
Identity = 50/105 (47.62%), Postives = 60/105 (57.14%), Query Frame = 1 
Query:    7 DLLGFLDHLRESVLPGASAKWIRPPQVQHILNYKACHSAIRFGDLLSRPECVDLIQRLSVCERPFCCAHGRPSVVPLCVL----GRMTPPGISRTTVTAAALAGK 309
            DL  +L  L E+   G SA    PP V  +L  KAC SAI FG LLSR +CVDL+Q+L   E  FCCAHGRP+ VPL  L     RM     +R+   AA  AG+
Sbjct: 1000 DLQLYLHQLLET---GGSASQ-PPPGVVRVLKSKACRSAIMFGKLLSRQQCVDLVQQLGQTELCFCCAHGRPTTVPLVDLVALQRRMQQQAHARSLGQAAQQAGR 1100
[Close]
BLAST of mRNA_H-paniculata_contig11951.1242.1 vs. uniprot
Match: F2U2F5_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U2F5_SALR5)

HSP 1 Score: 75.5 bits (184), Expect = 2.240e-12
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:   64 KWIRPPQVQHILNYKACHSAIRFGDLLSRPECVDLIQRLSVCERPFCCAHGRPSVVPL 237
            +W  PP +Q ILN +ACH AI+FGD LS  +C D++  L+ C+ PF CAHGRPS+ PL
Sbjct:  782 RWSIPPTLQDILNTRACHGAIKFGDELSIAQCQDILSDLASCKLPFQCAHGRPSIAPL 839
[Close]
BLAST of mRNA_H-paniculata_contig11951.1242.1 vs. uniprot
Match: A0A7S2WDY4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WDY4_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.940e-12
Identity = 36/76 (47.37%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:   13 LGFLDHLRESVLPGASAKWIRPPQVQHILNYKACHSAIRFGDLLSRPECVDLIQRLSVCERPFCCAHGRPSVVPLC 240
            LG LD       P  +   + P   Q ILNY+ACHSAI FGD L + +C  L+  L+ C  PF CAHGRPS   LC
Sbjct:  102 LGVLD-------PAVAGIHVLPASFQRILNYRACHSAITFGDHLDQDQCSQLLASLATCALPFQCAHGRPSATVLC 170
[Close]
BLAST of mRNA_H-paniculata_contig11951.1242.1 vs. uniprot
Match: UPI000C76B178 (LOW QUALITY PROTEIN: DNA mismatch repair protein Mlh3-like n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000C76B178)

HSP 1 Score: 75.1 bits (183), Expect = 2.950e-12
Identity = 33/69 (47.83%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   76 PPQVQHILNYKACHSAIRFGDLLSRPECVDLIQRLSVCERPFCCAHGRPSVVPLCVLGRMTPPGISRTT 282
            P  +Q+ILN +AC  AI+FGD LS  +C +++++LS+C+ PF CAHGRP++VPL  L  +T P + R++
Sbjct:  681 PKIIQNILNLEACRGAIKFGDKLSNNDCEEVLKKLSICDLPFQCAHGRPTLVPLITLN-LTNPTVGRSS 748
[Close]
BLAST of mRNA_H-paniculata_contig11951.1242.1 vs. uniprot
Match: A0A6H5JXH6_9PHAE (MutL_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.050e-11
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    4 QDLLGFLDHLRESVLPGASAKWIRPPQVQHILNYKACHSAIR 129
            QD +GFL  LRESV PG SA+ +RPPQVQHILNYKACHSAIR
Sbjct:   93 QDFVGFLHFLRESVEPGQSARRLRPPQVQHILNYKACHSAIR 134
[Close]
BLAST of mRNA_H-paniculata_contig11951.1242.1 vs. uniprot
Match: A0A0L8R9Q4_SACEU (MLH3-like protein n=2 Tax=Saccharomyces TaxID=4930 RepID=A0A0L8R9Q4_SACEU)

HSP 1 Score: 73.2 bits (178), Expect = 1.340e-11
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   79 PQVQH-ILNYKACHSAIRFGDLLSRPECVDLIQRLSVCERPFCCAHGRPSVVPLCVL 246
            P V H ILN KAC SAI FGD LSR EC+ L+ +LS C+ PF CAHGRPS+VP+  L
Sbjct:  658 PTVFHEILNSKACRSAIMFGDELSRQECIILVNKLSQCQNPFQCAHGRPSMVPIAEL 714
[Close]
BLAST of mRNA_H-paniculata_contig11951.1242.1 vs. uniprot
Match: K0K6B6_WICCF (DNA mismatch repair protein n=1 Tax=Wickerhamomyces ciferrii (strain ATCC 14091 / BCRC 22168 / CBS 111 / JCM 3599 / NBRC 0793 / NRRL Y-1031 F-60-10) TaxID=1206466 RepID=K0K6B6_WICCF)

HSP 1 Score: 73.2 bits (178), Expect = 1.350e-11
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   76 PPQVQHILNYKACHSAIRFGDLLSRPECVDLIQRLSVCERPFCCAHGRPSVVPLCVL 246
            P  +  ++N KAC SA+ FG  LS+PEC  LI+ L  C++PF CAHGRPS+VPLC L
Sbjct:  671 PSIIMDLINSKACRSAVMFGKSLSKPECEQLIKELVKCKQPFQCAHGRPSIVPLCDL 727
[Close]
BLAST of mRNA_H-paniculata_contig11951.1242.1 vs. uniprot
Match: A0A167QHD9_9PEZI (Vacuolar protein sorting protein n=1 Tax=Sporothrix insectorum RCEF 264 TaxID=1081102 RepID=A0A167QHD9_9PEZI)

HSP 1 Score: 72.8 bits (177), Expect = 1.870e-11
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   76 PPQVQHILNYKACHSAIRFGDLLSRPECVDLIQRLSVCERPFCCAHGRPSVVPLCVLG 249
            P  +  +LN KACHSAIRF D LSR  CV+L++ L  C  PF CAHGRPS+VPL  LG
Sbjct:  737 PQGILDLLNSKACHSAIRFNDSLSREACVNLLRALLRCSFPFQCAHGRPSMVPLLSLG 794
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11951.1242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZBI9_9STRA4.150e-1759.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0X8HSQ0_9SACH1.860e-1346.74HEL134Wp n=1 Tax=Eremothecium sinecaudum TaxID=452... [more]
A0A383W9Q8_TETOB9.310e-1347.62MutL_C domain-containing protein (Fragment) n=1 Ta... [more]
F2U2F5_SALR52.240e-1255.17Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A7S2WDY4_9STRA2.940e-1247.37Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
UPI000C76B1782.950e-1247.83LOW QUALITY PROTEIN: DNA mismatch repair protein M... [more]
A0A6H5JXH6_9PHAE1.050e-1178.57MutL_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A0L8R9Q4_SACEU1.340e-1163.16MLH3-like protein n=2 Tax=Saccharomyces TaxID=4930... [more]
K0K6B6_WICCF1.350e-1156.14DNA mismatch repair protein n=1 Tax=Wickerhamomyce... [more]
A0A167QHD9_9PEZI1.870e-1160.34Vacuolar protein sorting protein n=1 Tax=Sporothri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11951contigH-paniculata_contig11951:4366..7757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue2.1e-12
Seed eggNOG ortholog164328.Phyra94687
Preferred nameMLH3
KEGG koko:K08739
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000793,GO:0000794,GO:0000795,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003696,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005712,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0031974,GO:0031981,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048285,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0099086,GO:0140013,GO:1901360,GO:1901363,GO:1903046,GO:1990391,GO:1990837
EggNOG free text desc.mismatched DNA binding
EggNOG OGs3Q784@4776,COG0323@1,KOG1977@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons2
Model size610
Cds size333
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11951.1242.1prot_H-paniculata_contig11951.1242.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11951 4641..7757 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928910.8373737-UTR-H-paniculata_contig11951:4365..46401622928910.8373737-UTR-H-paniculata_contig11951:4365..4640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11951 4366..4640 -
1691480664.2753851-UTR-H-paniculata_contig11951:4365..46401691480664.2753851-UTR-H-paniculata_contig11951:4365..4640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11951 4366..4640 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928910.8613453-CDS-H-paniculata_contig11951:4640..48451622928910.8613453-CDS-H-paniculata_contig11951:4640..4845Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11951 4641..4845 -
1691480664.2906616-CDS-H-paniculata_contig11951:4640..48451691480664.2906616-CDS-H-paniculata_contig11951:4640..4845Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11951 4641..4845 -
1622928910.8736112-CDS-H-paniculata_contig11951:7629..77571622928910.8736112-CDS-H-paniculata_contig11951:7629..7757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11951 7630..7757 -
1691480664.2984283-CDS-H-paniculata_contig11951:7629..77571691480664.2984283-CDS-H-paniculata_contig11951:7629..7757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11951 7630..7757 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11951.1242.1

>prot_H-paniculata_contig11951.1242.1 ID=prot_H-paniculata_contig11951.1242.1|Name=mRNA_H-paniculata_contig11951.1242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
GQDLLGFLDHLRESVLPGASAKWIRPPQVQHILNYKACHSAIRFGDLLSR
PECVDLIQRLSVCERPFCCAHGRPSVVPLCVLGRMTPPGISRTTVTAAAL
AGKRTRGVVA*
back to top

mRNA from alignment at H-paniculata_contig11951:4366..7757-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11951.1242.1 ID=mRNA_H-paniculata_contig11951.1242.1|Name=mRNA_H-paniculata_contig11951.1242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3392bp|location=Sequence derived from alignment at H-paniculata_contig11951:4366..7757- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCAGGATCTCTTGGGGTTCTTAGATCATCTTCGAGAGAGCGTATTGCC
TGGTGCTTCTGCAAAGTGGATTAGACCTCCACAGGTGCAGCACATTCTCA
ACTACAAGGCCTGTCATTCCGCCATTAGGTGCGTGTGCACACAGAGGTTT
TCCCACCTTAACGTTGCTAACCAAAACGGTACAAGGTGGCGGTTATTATA
GCAACGATCTTCTTCTTGTGTGCTTTGTCTCAGCGTCTTTAGTATGATGA
TCAATTATTGGACGTAGGTGCATTAATCTTACTGTAATTTCCAAGTGCCT
TTCGCGGTGTACAGACATAGGTCATCATGCCCTAACTACGAGTCACTAGC
TTCGTTTATACGTCTCGAGAGCGTGGTGTTTCGAGCTCCAGATCCATTTT
TGCTGCGATTAGTGATTGGTGTAATAGAGGGTCCTGTAGTGCAGAGCATT
ACTCTCTGTCTGTCTGAGAGACGATGACCCTGTGGCATGAAATAAGGGCG
CTTGGTGGTAGATTCAGACGAGGGGGTACGTATCTGTCTACTACGGGGGC
AATGTCCCTCACTCGTAAAGATTGCACACCTCTAATACAGGAGAGGTAAA
GGACCTAGTATGCCTTCATCCCCAAGTCAATTTTCGTTATTAGCTGCCTT
CATCACCTTCATTGAACTTCATCGTAGTGTGGATGGAGGTTAATGAAGGC
ATAGCACCTTCATCGGACCGCTCCTTCGTCGGAGGTGTGAAAGATTCATT
CATATTCGGTGATGTAACGAGTGAAGGCTACATAAGATGAGCGTGGCACG
TGCTATGATGTTTTCGGCTTGTGGGTGCGAAAGAACCCCCCTTATTGATC
TATGCCTGCTGATGAGTGTACACACGTCAGCTGTATAAGCTAAAAATGTC
CTGGTACTCGGTCAGGATGAGGTTCAAATGTATGTCATGTGTGCAAGACC
CTATCGATCTACCAAGCAAAATACCGAAATAGCTTGTCAAGTCCATTCGA
AAGTCCCTTCACCTCGTCGACATGTGTGGTTTTTTTAGCTGTGACAGGGA
TGATGGGGAAGTAAGCACTTGCTCATGTACAGCCCTCCCTAAGCATAGTG
TACTCCAAGGTCGCACGATGGGGTTATCTAGGCCCCAGGCAATGGGCTAG
CACTCCGAAACATGAGTACATCATGTGCATAGAGCTCTGCGGGGGTTGTT
CGTTAAATGTTTTATCCCCTGGACAAATACGAATGGAGCATTCGCAGCTA
TCTCGAACCATCATTATTTGTCTCGAGTGAATCGTATTTATTCGTTTACA
AGGTCTATGAATGGCCACTTTGCAGATGGTCACTAGGTGGTCGTTTACCC
GGCGAACGGTCACACATGCAGGTCTTGTTTATCTTCCGGATGGTACTGTA
TAGATTGAATACTCTATCTGCCCGAGCTTTTCGATGCTCCATGGTATATC
GAGTACACTGCATACTATTCGCGTCAGATGGACATCTTCCCCAACCCAAA
CAGAGACAGTATTCATTCCAGATTTTTCGTATTGATTCGTGTCTTGTATT
CATATTTGTCCGAGGAGTAAATTGTTTCTGTGTCCCTAATTGTTGTCCTA
TGTGTTATCAGATGTTTCGATGGCTGTCCCTCAAATGAAGCTTTCGCCTG
TACCTTTTCGTGAGGAATATCCCAAAGTAATACAAAGGTAGATAAGGTAC
AGTAGGAACGGGTCAAATTATTCTGTGTCTGTTTTTCCCGCTTTTTCGCT
GAATGTTCGTCAATTTCACTTAAAACGTTTAGGATCGGTAGATATTGGCA
TGAAAGATAGGTCATTCATTGGAAATATGTTCCACTTTTGTACTAGCGGA
ACAGTATAGGAGAAAAACGTTTTTTTTAAGGGGAGGGGGGTGTTATTCGC
CGTATTTTGGTCGAAAACACGGTTTTTGAGCTTCGCGCCATGATTTTCTT
GAAAATTCGACAATTGAAGCCATCACCCTTTCCACCAGAGATTTAGGAAT
ACGTTAGATCAAAAACAAGAAATCAAGAGCCAAAATCTGGAGAGGAGGTA
GGAGTAGGACCCCAGACGACGGGTAAGCCCGAACCTCGTTCAAATTTCAT
CGTGGAAATAAAGCATTTTCCGCATCACATGTAACACACTAGTATCTATC
GATCCCCATATTTTGGAATCAGAGACCGACCCTGATAACTCATGATACCC
GAAAAAAAAGAAAAACAAAAGTGACAAATTCCCAAGAATAGTTTGACCCG
TGCCTACTTACTGTAGGTGAAACATTTTTGAGCCACATTTGGCAACGTAG
AAAAGAACCGTTGGCCATCGGAAATCGCTCTGACAGGAACAAAGCTCTGT
CCTCCCGAAGACGTGTGGTCAATGGTTTAACAAGTGCGACCTGTAAAACA
TGGGTACATCTCCTCCCCCCCTCCTTTTGGGATTGGCTACGTAGGTTTAT
CCTTGGCAAAGTGCTTGATTTCAGAGTACTGTCAAGATATAGTTGGTCTC
AACCAATGATGATTAGCGTCAATGCCCAGACGAGCACGAGTACTCGTTGT
CTGAATCTGATATCATTAAAACCTTGAGTTCAAAGAGTAAATTCAATTCA
GCACGGTTGTATATTAGTGCTGTGTTGAAACCGGCTCGAAGTGATTCAAT
TGACTCATGTGGAGATAAACCACTCGAGACTTCGGTGTGTCGCCAAACTG
CGTGGTTTCAGTATACCTCCCCCCCCCGCCTCTTTCGGCCCTCGGTTATT
TAGTCTCGAGAAGGTATGTGAGTCACGACCTCTGTGGTGACTTACTATGG
ATTACCTGAATCAAAATAAGGCACGTACTAGACGTCAACTTGTAAACGCA
TATTTATGTATAAGCTCACTTTCCATGCTGGTCGTGTTTTCTGGCTTCAC
TTGAATGTTCAGGTTCGGAGATTTGCTGTCTCGGCCGGAGTGCGTTGACC
TCATCCAAAGGCTCTCGGTTTGCGAGCGGCCATTTTGCTGTGCCCACGGC
CGTCCGAGTGTGGTGCCCCTGTGCGTCTTGGGACGGATGACCCCGCCGGG
AATTAGCCGAACAACGGTTACCGCTGCTGCTTTGGCGGGGAAAAGGACGA
GAGGAGTAGTGGCCTAGCTGCTGTTGTGGGGGAAAAAGTGACTGTTGGAA
TCGTGGAGTTATGTTTCTGTTGGAGACTTGTTTATCTGTTTATACGCCAC
TTCTTGTGACTGTTTTCTTGTGCCGTCATTTTGCTCCAGACAAGAGCACA
AGTTGAAAGAAATCAAGCACAAGTTATATGGGCGGGGGACTCGGGAAAAC
TCATTTGTTAGGGACATATCGGTCTTTGGAGTATGGCAAGATACACGTCG
CGCATCTCCCACCATGACGAGCTGCCAAGGTACACGCCTGCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11951:4366..7757-

>mRNA_H-paniculata_contig11951.1242.1 ID=mRNA_H-paniculata_contig11951.1242.1|Name=mRNA_H-paniculata_contig11951.1242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig11951:4366..7757- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCAGGATCTCTTGGGGTTCTTAGATCATCTTCGAGAGAGCGTATTGCC
TGGTGCTTCTGCAAAGTGGATTAGACCTCCACAGGTGCAGCACATTCTCA
ACTACAAGGCCTGTCATTCCGCCATTAGGGGCAGGATCTCTTGGGGTTCT
TAGATCATCTTCGAGAGAGCGTATTGCCTGGTGCTTCTGCAAAGTGGATT
AGACCTCCACAGGTGCAGCACATTCTCAACTACAAGGCCTGTCATTCCGC
CATTAGGTTCGGAGATTTGCTGTCTCGGCCGGAGTGCGTTGACCTCATCC
AAAGGCTCTCGGTTTGCGAGCGGCCATTTTGCTGTGCCCACGGCCGTCCG
AGTGTGGTGCCCCTGTGCGTCTTGGGACGGATGACCCCGCCGGGAATTAG
CCGAACAACGGTTACCGCTGCTGCTTTGGCGGGGAAAAGGACGAGAGGAG
TAGTGGCCTAGGTTCGGAGATTTGCTGTCTCGGCCGGAGTGCGTTGACCT
CATCCAAAGGCTCTCGGTTTGCGAGCGGCCATTTTGCTGTGCCCACGGCC
GTCCGAGTGTGGTGCCCCTGTGCGTCTTGGGACGGATGACCCCGCCGGGA
ATTAGCCGAACAACGGTTACCGCTGCTGCTTTGGCGGGGAAAAGGACGAG
AGGAGTAGTGGCCTAG
back to top