mRNA_H-paniculata_contig5115.12418.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5115.12418.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 164 bits (414), Expect = 9.020e-46 Identity = 87/223 (39.01%), Postives = 136/223 (60.99%), Query Frame = 1
Query: 16 EKEEMRGIPYPEGVGALL*ASTMMRPDISSAVCTTAKRCENPGMVYWKAVVKILEYARRTQGIGITYGGDRNREIRMRAFVESDNVTCRDTRRSVSGGTVLPGGDVISWFSRAQETAAAETSEAQYVALSEIVKELLFLR*EQALIMPTLESYPIDTMEDNKGAIKMANKEQSSKRTRHIDINHNIIRDSMDEGKVRIIFAESGNQHADILIKPRDRTSFEKH 684
E E +P+ E VG+L+ +T RPDI++AV A+ C +P MV+WKA + IL Y RRT +GIT+ + M+ FV++D + RRSVSGG V+ GG ++WFSR Q+ T+EA+YVA+++++KE+LFLR ++P I EDN+GAI++A+ ++ ++HID+ H+ IR+ ++ ++ I + QHAD L K + SF H
Sbjct: 91 ENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALH 313
BLAST of mRNA_H-paniculata_contig5115.12418.1 vs. uniprot
Match: A0A6H5KJP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP2_9PHAE) HSP 1 Score: 164 bits (415), Expect = 4.240e-45 Identity = 87/220 (39.55%), Postives = 136/220 (61.82%), Query Frame = 1
Query: 16 EKEEMRGIPYPEGVGALL*ASTMMRPDISSAVCTTAKRCENPGMVYWKAVVKILEYARRTQGIGITYGGDRNREIRMRAFVESDNVTCRDTRRSVSGGTVLPGGDVISWFSRAQETAAAETSEAQYVALSEIVKELLFLR*EQALIMPTLESYPIDTMEDNKGAIKMANKEQSSKRTRHIDINHNIIRDSMDEGKVRIIFAESGNQHADILIKPRDRTSF 675
E E +P+ E VG+L+ +T RPDI++AV A+ C +P MV+WKA + IL Y RRT +GIT+ + M+ FV++DN + RRSVSGG V+ GG ++WFSR Q+ T+E +YVA+++++KE+LFLR L++ + I EDN+GAI++A+ ++ ++HID+ H+ IR+ ++ ++ I S QHAD L K + SF
Sbjct: 144 ENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADNASKAADRRSVSGGVVMCGGGGVTWFSRTQKCVTLSTTEVEYVAIADVLKEVLFLRQVWRLMLLDADMSCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 363
BLAST of mRNA_H-paniculata_contig5115.12418.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 163 bits (413), Expect = 4.730e-45 Identity = 86/223 (38.57%), Postives = 135/223 (60.54%), Query Frame = 1
Query: 16 EKEEMRGIPYPEGVGALL*ASTMMRPDISSAVCTTAKRCENPGMVYWKAVVKILEYARRTQGIGITYGGDRNREIRMRAFVESDNVTCRDTRRSVSGGTVLPGGDVISWFSRAQETAAAETSEAQYVALSEIVKELLFLR*EQALIMPTLESYPIDTMEDNKGAIKMANKEQSSKRTRHIDINHNIIRDSMDEGKVRIIFAESGNQHADILIKPRDRTSFEKH 684
E E +P+ E VG+L+ +T RPDI++AV A+ C +P MV+WKA + IL Y RRT +GIT+ + M+ FV++D + RRSVSGG V+ GG ++WFSR Q+ T+EA+YVA+++++KE+LFLR ++P I EDN+GAI++ + ++ ++HID+ H+ IR+ ++ ++ I + QHAD L K + SF H
Sbjct: 146 ENEASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALH 368
BLAST of mRNA_H-paniculata_contig5115.12418.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE) HSP 1 Score: 160 bits (406), Expect = 5.870e-45 Identity = 85/223 (38.12%), Postives = 134/223 (60.09%), Query Frame = 1
Query: 16 EKEEMRGIPYPEGVGALL*ASTMMRPDISSAVCTTAKRCENPGMVYWKAVVKILEYARRTQGIGITYGGDRNREIRMRAFVESDNVTCRDTRRSVSGGTVLPGGDVISWFSRAQETAAAETSEAQYVALSEIVKELLFLR*EQALIMPTLESYPIDTMEDNKGAIKMANKEQSSKRTRHIDINHNIIRDSMDEGKVRIIFAESGNQHADILIKPRDRTSFEKH 684
+ EE+ P+ E +G+L+ +T RPDI++AV A+ C +P ++W+A + IL Y RT +GIT+ + M F ++D + RRSVSGG V+ GG +SWFSR Q+ T+EA+YV+L++++KE+LFLR + ++P I +EDN+GAI++A S+ ++HID+ H+ IR+ + ++ I ES QHAD L K + FE H
Sbjct: 24 QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECH 246
BLAST of mRNA_H-paniculata_contig5115.12418.1 vs. uniprot
Match: A0A6H5K8K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K2_9PHAE) HSP 1 Score: 160 bits (405), Expect = 1.620e-44 Identity = 87/220 (39.55%), Postives = 134/220 (60.91%), Query Frame = 1
Query: 16 EKEEMRGIPYPEGVGALL*ASTMMRPDISSAVCTTAKRCENPGMVYWKAVVKILEYARRTQGIGITYGGDRNREIRMRAFVESDNVTCRDTRRSVSGGTVLPGGDVISWFSRAQETAAAETSEAQYVALSEIVKELLFLR*EQALIMPTLESYPIDTMEDNKGAIKMANKEQSSKRTRHIDINHNIIRDSMDEGKVRIIFAESGNQHADILIKPRDRTSF 675
E E +P+ E VG+++ +T RPDI++AV A+ C +P MV+WKA + IL Y RRT +GIT+ + M+ FV++D V RRSVSGG V+ GG ++WFSR Q+ T+EA+YVA+++++KE+LFLR ++P I EDN+GAI++A+ ++ ++HID H++IR ++ ++ I S QHAD L K + SF
Sbjct: 63 ENEACADVPFRELVGSVMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYVRKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQVAHNPITNSNSKHIDERHHLIRKLVERKEISITHVTSEFQHADFLTKAISKESF 282
BLAST of mRNA_H-paniculata_contig5115.12418.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 162 bits (409), Expect = 6.740e-44 Identity = 86/223 (38.57%), Postives = 135/223 (60.54%), Query Frame = 1
Query: 16 EKEEMRGIPYPEGVGALL*ASTMMRPDISSAVCTTAKRCENPGMVYWKAVVKILEYARRTQGIGITYGGDRNREIRMRAFVESDNVTCRDTRRSVSGGTVLPGGDVISWFSRAQETAAAETSEAQYVALSEIVKELLFLR*EQALIMPTLESYPIDTMEDNKGAIKMANKEQSSKRTRHIDINHNIIRDSMDEGKVRIIFAESGNQHADILIKPRDRTSFEKH 684
E E +P+ E VG+L+ +T RPDI++AV A+ C +P MV+WKA + IL Y RRT +GIT+ + M+ FV++D + RRSVSGG V+ GG ++WFSR Q+ T+EA+YVA+++++KE+LFLR ++P I EDN+GAI++A+ ++ ++HID+ H+ IR+ ++ ++ I + QHAD L K + S H
Sbjct: 208 ENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLH 430
BLAST of mRNA_H-paniculata_contig5115.12418.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE) HSP 1 Score: 161 bits (407), Expect = 7.420e-44 Identity = 87/223 (39.01%), Postives = 134/223 (60.09%), Query Frame = 1
Query: 16 EKEEMRGIPYPEGVGALL*ASTMMRPDISSAVCTTAKRCENPGMVYWKAVVKILEYARRTQGIGITYGGDRNREIRMRAFVESDNVTCRDTRRSVSGGTVLPGGDVISWFSRAQETAAAETSEAQYVALSEIVKELLFLR*EQALIMPTLESYPIDTMEDNKGAIKMANKEQSSKRTRHIDINHNIIRDSMDEGKVRIIFAESGNQHADILIKPRDRTSFEKH 684
E E +P+ E VG+L+ +T RPDI++AV A+ C +P MV+WKA + IL Y RRT +GIT+ + M+ FV++D + RSVSGG V+ GG ++WFSR Q+ T+EA+YVA ++++KE+LFLR ++P I EDN+GAI++A+ ++ ++HID+ H+ IR+ ++ ++ I S QHAD L K + SF H
Sbjct: 183 ENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKGADCRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAFADVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALH 405
BLAST of mRNA_H-paniculata_contig5115.12418.1 vs. uniprot
Match: A0A6H5KPF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF9_9PHAE) HSP 1 Score: 159 bits (401), Expect = 1.600e-43 Identity = 85/221 (38.46%), Postives = 131/221 (59.28%), Query Frame = 1
Query: 22 EEMRGIPYPEGVGALL*ASTMMRPDISSAVCTTAKRCENPGMVYWKAVVKILEYARRTQGIGITYGGDRNREIRMRAFVESDNVTCRDTRRSVSGGTVLPGGDVISWFSRAQETAAAETSEAQYVALSEIVKELLFLR*EQALIMPTLESYPIDTMEDNKGAIKMANKEQSSKRTRHIDINHNIIRDSMDEGKVRIIFAESGNQHADILIKPRDRTSFEKH 684
EE P+ E VG+L+ +T RPDI++AV A+ C +P V+W A + IL YA+RT +GI++ ++ + ++D + RRSVSGG V GG V+SWFSR Q+ T+EA YVAL ++VKE+LFLR ++P + I EDN+GAI++A S+ ++HID+ H+ +R+ ++ ++ +I S Q AD L K + +FE H
Sbjct: 123 EEATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKRVHWDAAMGILGYAKRTSYMGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGVVSWFSRTQKCVTLSTTEAGYVALGDVVKEILFLRQVWRFMLPKVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKRLPKDAFESH 343
BLAST of mRNA_H-paniculata_contig5115.12418.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 160 bits (406), Expect = 1.860e-43 Identity = 87/223 (39.01%), Postives = 132/223 (59.19%), Query Frame = 1
Query: 16 EKEEMRGIPYPEGVGALL*ASTMMRPDISSAVCTTAKRCENPGMVYWKAVVKILEYARRTQGIGITYGGDRNREIRMRAFVESDNVTCRDTRRSVSGGTVLPGGDVISWFSRAQETAAAETSEAQYVALSEIVKELLFLR*EQALIMPTLESYPIDTMEDNKGAIKMANKEQSSKRTRHIDINHNIIRDSMDEGKVRIIFAESGNQHADILIKPRDRTSFEKH 684
+ EE+ P+ E +G+L+ +T RPDI++AV A+ C +P ++W+A + IL Y RT +GIT+ + M FV++D + RRSVSGG V+ GG ISWFSR Q+ T+EA+YV+L++++KE+LFLR ++P I EDN+GAI++A S+ ++HID+ H+ IR+ + ++ I ES QHAD L K FE H
Sbjct: 208 QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFH 430
BLAST of mRNA_H-paniculata_contig5115.12418.1 vs. uniprot
Match: A0A6H5L8D6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D6_9PHAE) HSP 1 Score: 160 bits (404), Expect = 3.060e-43 Identity = 83/216 (38.43%), Postives = 130/216 (60.19%), Query Frame = 1
Query: 37 IPYPEGVGALL*ASTMMRPDISSAVCTTAKRCENPGMVYWKAVVKILEYARRTQGIGITYGGDRNREIRMRAFVESDNVTCRDTRRSVSGGTVLPGGDVISWFSRAQETAAAETSEAQYVALSEIVKELLFLR*EQALIMPTLESYPIDTMEDNKGAIKMANKEQSSKRTRHIDINHNIIRDSMDEGKVRIIFAESGNQHADILIKPRDRTSFEKH 684
P+ E VG+L+ +T RPDI++AV T A+ C +P +V W A + IL YARRT GI++ + ++ + ++D T RRSVSGG V GG +SWFSR Q+ T+EA+YVAL ++VKE+LFLR ++P + I EDN+GAI++A S+ ++H+D+ H+++R+ ++ ++ +I Q AD L K + +FE H
Sbjct: 206 FPFHELVGSLMWLATQTRPDIANAVRTVARYCASPKLVPWNAAMDILGYARRTSQFGISFQRGTVEGLSLQGYADADFATKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQFWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHVDVRHHLVRELVERKEISVIHVPRRYQRADFLTKSLPKDAFESH 421 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5115.12418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5115.12418.1 >prot_H-paniculata_contig5115.12418.1 ID=prot_H-paniculata_contig5115.12418.1|Name=mRNA_H-paniculata_contig5115.12418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp MMRPDISSAVCTTAKRCENPGMVYWKAVVKILEYARRTQGIGITYGGDRNback to top mRNA from alignment at H-paniculata_contig5115:1190..1885- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5115.12418.1 ID=mRNA_H-paniculata_contig5115.12418.1|Name=mRNA_H-paniculata_contig5115.12418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=696bp|location=Sequence derived from alignment at H-paniculata_contig5115:1190..1885- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5115:1190..1885- >mRNA_H-paniculata_contig5115.12418.1 ID=mRNA_H-paniculata_contig5115.12418.1|Name=mRNA_H-paniculata_contig5115.12418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig5115:1190..1885- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |