mRNA_H-paniculata_contig5115.12418.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5115.12418.1
Unique NamemRNA_H-paniculata_contig5115.12418.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5115.12418.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 9.020e-46
Identity = 87/223 (39.01%), Postives = 136/223 (60.99%), Query Frame = 1
Query:   16 EKEEMRGIPYPEGVGALL*ASTMMRPDISSAVCTTAKRCENPGMVYWKAVVKILEYARRTQGIGITYGGDRNREIRMRAFVESDNVTCRDTRRSVSGGTVLPGGDVISWFSRAQETAAAETSEAQYVALSEIVKELLFLR*EQALIMPTLESYPIDTMEDNKGAIKMANKEQSSKRTRHIDINHNIIRDSMDEGKVRIIFAESGNQHADILIKPRDRTSFEKH 684
            E E    +P+ E VG+L+  +T  RPDI++AV   A+ C +P MV+WKA + IL Y RRT  +GIT+       + M+ FV++D  +    RRSVSGG V+ GG  ++WFSR Q+     T+EA+YVA+++++KE+LFLR     ++P      I   EDN+GAI++A+   ++  ++HID+ H+ IR+ ++  ++ I    +  QHAD L K   + SF  H
Sbjct:   91 ENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALH 313          
BLAST of mRNA_H-paniculata_contig5115.12418.1 vs. uniprot
Match: A0A6H5KJP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP2_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 4.240e-45
Identity = 87/220 (39.55%), Postives = 136/220 (61.82%), Query Frame = 1
Query:   16 EKEEMRGIPYPEGVGALL*ASTMMRPDISSAVCTTAKRCENPGMVYWKAVVKILEYARRTQGIGITYGGDRNREIRMRAFVESDNVTCRDTRRSVSGGTVLPGGDVISWFSRAQETAAAETSEAQYVALSEIVKELLFLR*EQALIMPTLESYPIDTMEDNKGAIKMANKEQSSKRTRHIDINHNIIRDSMDEGKVRIIFAESGNQHADILIKPRDRTSF 675
            E E    +P+ E VG+L+  +T  RPDI++AV   A+ C +P MV+WKA + IL Y RRT  +GIT+       + M+ FV++DN +    RRSVSGG V+ GG  ++WFSR Q+     T+E +YVA+++++KE+LFLR    L++   +   I   EDN+GAI++A+   ++  ++HID+ H+ IR+ ++  ++ I    S  QHAD L K   + SF
Sbjct:  144 ENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADNASKAADRRSVSGGVVMCGGGGVTWFSRTQKCVTLSTTEVEYVAIADVLKEVLFLRQVWRLMLLDADMSCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 363          
BLAST of mRNA_H-paniculata_contig5115.12418.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 4.730e-45
Identity = 86/223 (38.57%), Postives = 135/223 (60.54%), Query Frame = 1
Query:   16 EKEEMRGIPYPEGVGALL*ASTMMRPDISSAVCTTAKRCENPGMVYWKAVVKILEYARRTQGIGITYGGDRNREIRMRAFVESDNVTCRDTRRSVSGGTVLPGGDVISWFSRAQETAAAETSEAQYVALSEIVKELLFLR*EQALIMPTLESYPIDTMEDNKGAIKMANKEQSSKRTRHIDINHNIIRDSMDEGKVRIIFAESGNQHADILIKPRDRTSFEKH 684
            E E    +P+ E VG+L+  +T  RPDI++AV   A+ C +P MV+WKA + IL Y RRT  +GIT+       + M+ FV++D  +    RRSVSGG V+ GG  ++WFSR Q+     T+EA+YVA+++++KE+LFLR     ++P      I   EDN+GAI++ +   ++  ++HID+ H+ IR+ ++  ++ I    +  QHAD L K   + SF  H
Sbjct:  146 ENEASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALH 368          
BLAST of mRNA_H-paniculata_contig5115.12418.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 5.870e-45
Identity = 85/223 (38.12%), Postives = 134/223 (60.09%), Query Frame = 1
Query:   16 EKEEMRGIPYPEGVGALL*ASTMMRPDISSAVCTTAKRCENPGMVYWKAVVKILEYARRTQGIGITYGGDRNREIRMRAFVESDNVTCRDTRRSVSGGTVLPGGDVISWFSRAQETAAAETSEAQYVALSEIVKELLFLR*EQALIMPTLESYPIDTMEDNKGAIKMANKEQSSKRTRHIDINHNIIRDSMDEGKVRIIFAESGNQHADILIKPRDRTSFEKH 684
            + EE+   P+ E +G+L+  +T  RPDI++AV   A+ C +P  ++W+A + IL Y  RT  +GIT+       + M  F ++D  +    RRSVSGG V+ GG  +SWFSR Q+     T+EA+YV+L++++KE+LFLR  +  ++P      I  +EDN+GAI++A    S+  ++HID+ H+ IR+ +   ++ I   ES  QHAD L K  +   FE H
Sbjct:   24 QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECH 246          
BLAST of mRNA_H-paniculata_contig5115.12418.1 vs. uniprot
Match: A0A6H5K8K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K2_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.620e-44
Identity = 87/220 (39.55%), Postives = 134/220 (60.91%), Query Frame = 1
Query:   16 EKEEMRGIPYPEGVGALL*ASTMMRPDISSAVCTTAKRCENPGMVYWKAVVKILEYARRTQGIGITYGGDRNREIRMRAFVESDNVTCRDTRRSVSGGTVLPGGDVISWFSRAQETAAAETSEAQYVALSEIVKELLFLR*EQALIMPTLESYPIDTMEDNKGAIKMANKEQSSKRTRHIDINHNIIRDSMDEGKVRIIFAESGNQHADILIKPRDRTSF 675
            E E    +P+ E VG+++  +T  RPDI++AV   A+ C +P MV+WKA + IL Y RRT  +GIT+       + M+ FV++D V     RRSVSGG V+ GG  ++WFSR Q+     T+EA+YVA+++++KE+LFLR     ++P      I   EDN+GAI++A+   ++  ++HID  H++IR  ++  ++ I    S  QHAD L K   + SF
Sbjct:   63 ENEACADVPFRELVGSVMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYVRKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQVAHNPITNSNSKHIDERHHLIRKLVERKEISITHVTSEFQHADFLTKAISKESF 282          
BLAST of mRNA_H-paniculata_contig5115.12418.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 6.740e-44
Identity = 86/223 (38.57%), Postives = 135/223 (60.54%), Query Frame = 1
Query:   16 EKEEMRGIPYPEGVGALL*ASTMMRPDISSAVCTTAKRCENPGMVYWKAVVKILEYARRTQGIGITYGGDRNREIRMRAFVESDNVTCRDTRRSVSGGTVLPGGDVISWFSRAQETAAAETSEAQYVALSEIVKELLFLR*EQALIMPTLESYPIDTMEDNKGAIKMANKEQSSKRTRHIDINHNIIRDSMDEGKVRIIFAESGNQHADILIKPRDRTSFEKH 684
            E E    +P+ E VG+L+  +T  RPDI++AV   A+ C +P MV+WKA + IL Y RRT  +GIT+       + M+ FV++D  +    RRSVSGG V+ GG  ++WFSR Q+     T+EA+YVA+++++KE+LFLR     ++P      I   EDN+GAI++A+   ++  ++HID+ H+ IR+ ++  ++ I    +  QHAD L K   + S   H
Sbjct:  208 ENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLH 430          
BLAST of mRNA_H-paniculata_contig5115.12418.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 7.420e-44
Identity = 87/223 (39.01%), Postives = 134/223 (60.09%), Query Frame = 1
Query:   16 EKEEMRGIPYPEGVGALL*ASTMMRPDISSAVCTTAKRCENPGMVYWKAVVKILEYARRTQGIGITYGGDRNREIRMRAFVESDNVTCRDTRRSVSGGTVLPGGDVISWFSRAQETAAAETSEAQYVALSEIVKELLFLR*EQALIMPTLESYPIDTMEDNKGAIKMANKEQSSKRTRHIDINHNIIRDSMDEGKVRIIFAESGNQHADILIKPRDRTSFEKH 684
            E E    +P+ E VG+L+  +T  RPDI++AV   A+ C +P MV+WKA + IL Y RRT  +GIT+       + M+ FV++D  +     RSVSGG V+ GG  ++WFSR Q+     T+EA+YVA ++++KE+LFLR     ++P      I   EDN+GAI++A+   ++  ++HID+ H+ IR+ ++  ++ I    S  QHAD L K   + SF  H
Sbjct:  183 ENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKGADCRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAFADVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALH 405          
BLAST of mRNA_H-paniculata_contig5115.12418.1 vs. uniprot
Match: A0A6H5KPF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF9_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.600e-43
Identity = 85/221 (38.46%), Postives = 131/221 (59.28%), Query Frame = 1
Query:   22 EEMRGIPYPEGVGALL*ASTMMRPDISSAVCTTAKRCENPGMVYWKAVVKILEYARRTQGIGITYGGDRNREIRMRAFVESDNVTCRDTRRSVSGGTVLPGGDVISWFSRAQETAAAETSEAQYVALSEIVKELLFLR*EQALIMPTLESYPIDTMEDNKGAIKMANKEQSSKRTRHIDINHNIIRDSMDEGKVRIIFAESGNQHADILIKPRDRTSFEKH 684
            EE    P+ E VG+L+  +T  RPDI++AV   A+ C +P  V+W A + IL YA+RT  +GI++         ++ + ++D  +    RRSVSGG V  GG V+SWFSR Q+     T+EA YVAL ++VKE+LFLR     ++P +    I   EDN+GAI++A    S+  ++HID+ H+ +R+ ++  ++ +I   S  Q AD L K   + +FE H
Sbjct:  123 EEATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKRVHWDAAMGILGYAKRTSYMGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGVVSWFSRTQKCVTLSTTEAGYVALGDVVKEILFLRQVWRFMLPKVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKRLPKDAFESH 343          
BLAST of mRNA_H-paniculata_contig5115.12418.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.860e-43
Identity = 87/223 (39.01%), Postives = 132/223 (59.19%), Query Frame = 1
Query:   16 EKEEMRGIPYPEGVGALL*ASTMMRPDISSAVCTTAKRCENPGMVYWKAVVKILEYARRTQGIGITYGGDRNREIRMRAFVESDNVTCRDTRRSVSGGTVLPGGDVISWFSRAQETAAAETSEAQYVALSEIVKELLFLR*EQALIMPTLESYPIDTMEDNKGAIKMANKEQSSKRTRHIDINHNIIRDSMDEGKVRIIFAESGNQHADILIKPRDRTSFEKH 684
            + EE+   P+ E +G+L+  +T  RPDI++AV   A+ C +P  ++W+A + IL Y  RT  +GIT+       + M  FV++D  +    RRSVSGG V+ GG  ISWFSR Q+     T+EA+YV+L++++KE+LFLR     ++P      I   EDN+GAI++A    S+  ++HID+ H+ IR+ +   ++ I   ES  QHAD L K      FE H
Sbjct:  208 QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFH 430          
BLAST of mRNA_H-paniculata_contig5115.12418.1 vs. uniprot
Match: A0A6H5L8D6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D6_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 3.060e-43
Identity = 83/216 (38.43%), Postives = 130/216 (60.19%), Query Frame = 1
Query:   37 IPYPEGVGALL*ASTMMRPDISSAVCTTAKRCENPGMVYWKAVVKILEYARRTQGIGITYGGDRNREIRMRAFVESDNVTCRDTRRSVSGGTVLPGGDVISWFSRAQETAAAETSEAQYVALSEIVKELLFLR*EQALIMPTLESYPIDTMEDNKGAIKMANKEQSSKRTRHIDINHNIIRDSMDEGKVRIIFAESGNQHADILIKPRDRTSFEKH 684
             P+ E VG+L+  +T  RPDI++AV T A+ C +P +V W A + IL YARRT   GI++       + ++ + ++D  T    RRSVSGG V  GG  +SWFSR Q+     T+EA+YVAL ++VKE+LFLR     ++P +    I   EDN+GAI++A    S+  ++H+D+ H+++R+ ++  ++ +I      Q AD L K   + +FE H
Sbjct:  206 FPFHELVGSLMWLATQTRPDIANAVRTVARYCASPKLVPWNAAMDILGYARRTSQFGISFQRGTVEGLSLQGYADADFATKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQFWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHVDVRHHLVRELVERKEISVIHVPRRYQRADFLTKSLPKDAFESH 421          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5115.12418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP70_9PHAE9.020e-4639.01Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJP2_9PHAE4.240e-4539.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4G9_9PHAE4.730e-4538.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTK6_9PHAE5.870e-4538.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8K2_9PHAE1.620e-4439.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEF2_9PHAE6.740e-4438.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3H4_9PHAE7.420e-4439.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPF9_9PHAE1.600e-4338.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLN0_9PHAE1.860e-4339.01Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L8D6_9PHAE3.060e-4338.43Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5115contigH-paniculata_contig5115:1190..1885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score93.2
Seed ortholog evalue8.8e-17
Seed eggNOG ortholog5297.GMQ_25919T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs2YC45@29000,38DPC@33154,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPucciniomycotina
Best eggNOG OGNA|NA|NA
Exons1
Model size696
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5115.12418.1prot_H-paniculata_contig5115.12418.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5115 1448..1804 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930499.7229712-UTR-H-paniculata_contig5115:1189..14471622930499.7229712-UTR-H-paniculata_contig5115:1189..1447Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5115 1190..1447 -
1691481320.2787333-UTR-H-paniculata_contig5115:1189..14471691481320.2787333-UTR-H-paniculata_contig5115:1189..1447Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5115 1190..1447 -
1622930499.7593384-UTR-H-paniculata_contig5115:1804..18851622930499.7593384-UTR-H-paniculata_contig5115:1804..1885Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5115 1805..1885 -
1691481320.2982998-UTR-H-paniculata_contig5115:1804..18851691481320.2982998-UTR-H-paniculata_contig5115:1804..1885Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5115 1805..1885 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930499.7428539-CDS-H-paniculata_contig5115:1447..18041622930499.7428539-CDS-H-paniculata_contig5115:1447..1804Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5115 1448..1804 -
1691481320.289513-CDS-H-paniculata_contig5115:1447..18041691481320.289513-CDS-H-paniculata_contig5115:1447..1804Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5115 1448..1804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5115.12418.1

>prot_H-paniculata_contig5115.12418.1 ID=prot_H-paniculata_contig5115.12418.1|Name=mRNA_H-paniculata_contig5115.12418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
MMRPDISSAVCTTAKRCENPGMVYWKAVVKILEYARRTQGIGITYGGDRN
REIRMRAFVESDNVTCRDTRRSVSGGTVLPGGDVISWFSRAQETAAAETS
EAQYVALSEIVKELLFLR*
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mRNA from alignment at H-paniculata_contig5115:1190..1885-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5115.12418.1 ID=mRNA_H-paniculata_contig5115.12418.1|Name=mRNA_H-paniculata_contig5115.12418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=696bp|location=Sequence derived from alignment at H-paniculata_contig5115:1190..1885- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCAGATTCCGGGGGAGAAGGAGGAAATGCGCGGAATCCCGTACCCAGA GGGAGTGGGTGCGCTCTTGTGAGCATCGACTATGATGCGACCCGATATCT CGAGTGCTGTCTGCACCACGGCGAAACGCTGCGAGAACCCCGGCATGGTG TACTGGAAGGCTGTGGTGAAGATCCTAGAGTACGCGCGGAGGACCCAGGG CATTGGGATCACCTACGGTGGAGACAGGAACCGCGAGATCCGGATGCGAG CATTCGTAGAGTCAGACAACGTTACATGCCGGGACACCAGGCGTTCGGTT TCAGGAGGGACTGTACTTCCGGGCGGGGACGTGATCAGCTGGTTCTCGCG GGCCCAGGAGACTGCCGCGGCAGAAACTTCGGAGGCGCAGTACGTGGCAC TTTCGGAGATTGTTAAGGAGTTACTTTTTCTCCGCTAGGAGCAGGCGCTC ATCATGCCCACTCTGGAGAGCTACCCCATCGACACCATGGAGGACAACAA GGGGGCTATCAAGATGGCGAACAAGGAGCAATCCAGCAAGAGAACGAGGC ATATCGATATCAACCACAACATAATTCGCGACTCTATGGATGAGGGAAAA GTTCGCATCATCTTCGCCGAGAGTGGAAACCAACATGCGGACATACTCAT TAAGCCTCGAGATAGGACCTCGTTTGAAAAGCACTTTAGCGCTCTA
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Coding sequence (CDS) from alignment at H-paniculata_contig5115:1190..1885-

>mRNA_H-paniculata_contig5115.12418.1 ID=mRNA_H-paniculata_contig5115.12418.1|Name=mRNA_H-paniculata_contig5115.12418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig5115:1190..1885- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCGACCCGATATCTCGAGTGCTGTCTGCACCACGGCGAAACGCTG
CGAGAACCCCGGCATGGTGTACTGGAAGGCTGTGGTGAAGATCCTAGAGT
ACGCGCGGAGGACCCAGGGCATTGGGATCACCTACGGTGGAGACAGGAAC
CGCGAGATCCGGATGCGAGCATTCGTAGAGTCAGACAACGTTACATGCCG
GGACACCAGGCGTTCGGTTTCAGGAGGGACTGTACTTCCGGGCGGGGACG
TGATCAGCTGGTTCTCGCGGGCCCAGGAGACTGCCGCGGCAGAAACTTCG
GAGGCGCAGTACGTGGCACTTTCGGAGATTGTTAAGGAGTTACTTTTTCT
CCGCTAGATGATGCGACCCGATATCTCGAGTGCTGTCTGCACCACGGCGA
AACGCTGCGAGAACCCCGGCATGGTGTACTGGAAGGCTGTGGTGAAGATC
CTAGAGTACGCGCGGAGGACCCAGGGCATTGGGATCACCTACGGTGGAGA
CAGGAACCGCGAGATCCGGATGCGAGCATTCGTAGAGTCAGACAACGTTA
CATGCCGGGACACCAGGCGTTCGGTTTCAGGAGGGACTGTACTTCCGGGC
GGGGACGTGATCAGCTGGTTCTCGCGGGCCCAGGAGACTGCCGCGGCAGA
AACTTCGGAGGCGCAGTACGTGGCACTTTCGGAGATTGTTAAGGAGTTAC
TTTTTCTCCGCTAG
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