mRNA_H-paniculata_contig5112.12412.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5112.12412.1
Unique NamemRNA_H-paniculata_contig5112.12412.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5112.12412.1 vs. uniprot
Match: D8LCV3_ECTSI (Proteasome subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV3_ECTSI)

HSP 1 Score: 355 bits (912), Expect = 4.460e-113
Identity = 185/241 (76.76%), Postives = 206/241 (85.48%), Query Frame = 3 
Query:  297 AGRCGKSGSNPYELVAPGADEPLRLSHGTTTVALLFDGGVIAAVDSRASMGSFVGSRTTQKVIPVSDYILGTMAGGAADCTFWLRYLGMQASIFEARNGRRMPVATAARVLGDTLMGQRGRGLSVGTMVMGCDGGQPDAA-------------HLYYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRPGMSLKEAADLARRAVRHATYRDAFSGGFINVFVVDASGWSKMTTDDSGFMEV 980
            AGR G  G +PY + APGA EPL+LSHGTTTVAL+ DGGVIAAVDSRASMGSFVGSRTTQKVIPVS +ILGTMAGGAADCTFWLRYLGMQA +FE RNG +MPVATAARVL D L+GQRG+GLSVGTM+MG D G  D++              L+YVDSDGARVKGRYFSVGSGSTYAYSVLDEGYR GMSL+EAADLA+RAVRHATYRDAFSGGFINVFVVDASGW+++  DDSGF+++
Sbjct:   11 AGRAG--GGDPYTVAAPGA-EPLKLSHGTTTVALVCDGGVIAAVDSRASMGSFVGSRTTQKVIPVSQHILGTMAGGAADCTFWLRYLGMQAKVFEDRNGFQMPVATAARVLADALLGQRGKGLSVGTMIMGHDRGNRDSSGRGSVSGGNQGGGQLFYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRDGMSLEEAADLAKRAVRHATYRDAFSGGFINVFVVDASGWTRLDVDDSGFLDL 248
[Close]
BLAST of mRNA_H-paniculata_contig5112.12412.1 vs. uniprot
Match: A0A836CP51_9STRA (Proteasome endopeptidase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP51_9STRA)

HSP 1 Score: 241 bits (615), Expect = 4.800e-70
Identity = 129/218 (59.17%), Postives = 163/218 (74.77%), Query Frame = 3 
Query:  303 RCGKSGSNPYELVAPGADEPLRLSHGTTTVALLFDGGVIAAVDSRASMGSFVGSRTTQKVIPVSDYILGTMAGGAADCTFWLRYLGMQASIFEARNGRRMPVATAARVLGDTLMGQRGRGLSVGTMVMGCDGG-QPDAAHLYYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRPGMSLKEAADLARRAVRHATYRDAFSGGFINVFVVDASGWSKMT 953
            R G S    ++L  PGA  PL L+HGTTTVA++ DGG+IAAVDSRASMG+F+GS TT K IP+S  I+GTMAGGAADC+FWLR LG Q  +    NG R+ V  AARVL + L G  G GLS+GTM+MG DGG +  +  LYYVDS+G RV+G YF+VGSGSTYAY VLD GY+  M++  AA LA RAV+ A +RDA+SGGFINV+ V+A+G ++++
Sbjct:   19 RGGGSEDQNHQLDVPGAS-PLLLAHGTTTVAMVIDGGIIAAVDSRASMGAFIGSSTTTKFIPISKTIVGTMAGGAADCSFWLRVLGEQVRVLTG-NGARVTVRAAARVLANVLHGLSGGGLSIGTMIMGWDGGAEGGSPDLYYVDSEGTRVRGSYFAVGSGSTYAYGVLDAGYQRNMTVGAAAALAARAVQRAAFRDAYSGGFINVYHVNATGVTQLS 234
[Close]
BLAST of mRNA_H-paniculata_contig5112.12412.1 vs. uniprot
Match: M2W568_GALSU (Proteasome subunit beta n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W568_GALSU)

HSP 1 Score: 236 bits (602), Expect = 9.570e-68
Identity = 113/203 (55.67%), Postives = 156/203 (76.85%), Query Frame = 3 
Query:  363 LRLSHGTTTVALLFDGGVIAAVDSRASMGSFVGSRTTQKVIPVSDYILGTMAGGAADCTFWLRYLGMQASIFEARNGRRMPVATAARVLGDTLMGQRGRGLSVGTMVMGCDGGQPDAAHLYYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRPGMSLKEAADLARRAVRHATYRDAFSGGFINVFVVDASGWSKMTTDDSGF 971
            ++  HGTTT++ +F  G++AAVDSRASMG ++GS + +KVI ++ Y+LGTMAGGAADCTFW RYLGM+  IFE +N  R+ VA A+++L +T+   +G GLS+GTM+MG D   P   H+YYVDS+G R+KG  FSVGSGST+A  VLD+GY+  MS++EA +L RR++ HAT+RDAFSGG+INV+ +   GW  ++ +DSGF
Sbjct:   53 VKFHHGTTTLSFIFSEGIVAAVDSRASMGQYIGSGSVKKVIEINKYLLGTMAGGAADCTFWERYLGMRCRIFELKNKERISVAAASKILCNTVYQYKGMGLSMGTMIMGWDKKGP---HIYYVDSEGTRLKGSKFSVGSGSTHALGVLDQGYKWNMSVEEACELGRRSIYHATHRDAFSGGYINVYYIGPDGWKFISHEDSGF 252
[Close]
BLAST of mRNA_H-paniculata_contig5112.12412.1 vs. uniprot
Match: A0A6U2YY24_9EUKA (Proteasome subunit beta n=2 Tax=Lotharella TaxID=74819 RepID=A0A6U2YY24_9EUKA)

HSP 1 Score: 232 bits (591), Expect = 5.600e-66
Identity = 114/198 (57.58%), Postives = 149/198 (75.25%), Query Frame = 3 
Query:  357 EPLRLSHGTTTVALLFDGGVIAAVDSRASMGSFVGSRTTQKVIPVSDYILGTMAGGAADCTFWLRYLGMQASIFEARNGRRMPVATAARVLGDTLMGQRGRGLSVGTMVMGCDGGQPDAAHLYYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRPGMSLKEAADLARRAVRHATYRDAFSGGFINVFVVDASGWSKM 950
            + ++ SHGTTT+A LF GGV+ AVDSRASMGS++GS T +KVIPVS Y++GTMAGGAADC+FW R L MQ  + E R G+R+ VA A+++LG+ +   RG GLS+GTM+ G D  +     L+YVDSDG R+KG  FSVGSG+TYAY VLD GY   +  K+A +L +RA+ HAT+RDA+SGG INVFV+  +GW +M
Sbjct:   71 DKIKFSHGTTTLAFLFKGGVLVAVDSRASMGSYIGSGTVKKVIPVSKYLIGTMAGGAADCSFWERNLAMQCRLHELREGKRISVAAASKLLGNVVFQYRGYGLSMGTMMAGWD--EKKGPGLFYVDSDGTRLKGNLFSVGSGATYAYGVLDSGYSYDLDEKQAIELGKRAIYHATHRDAYSGGTINVFVIRETGWEQM 266
[Close]
BLAST of mRNA_H-paniculata_contig5112.12412.1 vs. uniprot
Match: A0A1X6NR75_PORUM (Proteasome subunit beta type-5 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NR75_PORUM)

HSP 1 Score: 232 bits (591), Expect = 1.440e-65
Identity = 119/207 (57.49%), Postives = 156/207 (75.36%), Query Frame = 3 
Query:  348 GADEPLRL--SHGTTTVALLFDGGVIAAVDSRASMGSFVGSRTTQKVIPVSDYILGTMAGGAADCTFWLRYLGMQASIFEARNGRRMPVATAARVLGDTLMGQRGRGLSVGTMVMGCDGGQPDAAHLYYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRPGMSLKEAADLARRAVRHATYRDAFSGGFINVFVVDASGWSKMTTDD 962
            GA E  RL  +HGTTT+A +F GG+IAAVDSRASMG +VGS T +K+I ++ Y+LGTMAGGAADC+FW R LG +  +++ RN +R+ VA A+++L +T+ G +G GLS+GTM+MG D   P   HL+YVDS+G R+KG  FSVGSGSTYAY VLD GY   M ++EA  LARR++ HAT+RDA SGG INV+ V   GW K+++DD
Sbjct:   53 GASEKDRLHFAHGTTTLAFVFQGGIIAAVDSRASMGQYVGSGTVKKIIEINPYLLGTMAGGAADCSFWERDLGRRCRLYQLRNKQRISVAAASKLLANTVYGYKGMGLSMGTMIMGWDVSGP---HLHYVDSEGTRLKGHKFSVGSGSTYAYGVLDAGYSWDMGVEEAITLARRSIYHATHRDAASGGVINVYHVKEGGWVKISSDD 256
[Close]
BLAST of mRNA_H-paniculata_contig5112.12412.1 vs. uniprot
Match: A0A7S2BHB5_9CHLO (Proteasome subunit beta n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2BHB5_9CHLO)

HSP 1 Score: 229 bits (584), Expect = 4.710e-65
Identity = 113/212 (53.30%), Postives = 155/212 (73.11%), Query Frame = 3 
Query:  363 LRLSHGTTTVALLFDGGVIAAVDSRASMGSFVGSRTTQKVIPVSDYILGTMAGGAADCTFWLRYLGMQASIFEARNGRRMPVATAARVLGDTLMGQRGRGLSVGTMVMGCDGGQPDAAHLYYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRPGMSLKEAADLARRAVRHATYRDAFSGGFINVFVVDASGWSKMTTDDSGFMEVREGPHG 998
            ++ +HGTTT+  +F+GGVI AVDSRASMG ++ S+T +KVI ++ ++LGTMAGGAADC FW R LG+Q  +FE ++ RR+ V  A+++L +TL   RG GLS+GTMV G D   PD   LYYVDS+  R+KG+ FSVGSGS +AY VLD GY+  MS++EA +L RRA+ HAT+RDA+SGG ++V+ V  +GW K++ DD G +     P G
Sbjct:   65 VKPNHGTTTLGFIFEGGVIIAVDSRASMGPYISSQTVKKVIEINPFLLGTMAGGAADCQFWQRNLGVQCRLFELKHKRRITVGAASKLLANTLFSYRGMGLSMGTMVAGWD---PDGPALYYVDSEAQRIKGKRFSVGSGSLFAYGVLDTGYKWDMSVEEACELGRRAIYHATFRDAYSGGTVSVYHVTENGWRKVSGDDVGDLHYHYYPEG 273
[Close]
BLAST of mRNA_H-paniculata_contig5112.12412.1 vs. uniprot
Match: A0A7S2VUQ7_9EUKA (Proteasome subunit beta n=1 Tax=Norrisiella sphaerica TaxID=552664 RepID=A0A7S2VUQ7_9EUKA)

HSP 1 Score: 230 bits (587), Expect = 5.010e-65
Identity = 114/200 (57.00%), Postives = 150/200 (75.00%), Query Frame = 3 
Query:  351 ADEPLRLSHGTTTVALLFDGGVIAAVDSRASMGSFVGSRTTQKVIPVSDYILGTMAGGAADCTFWLRYLGMQASIFEARNGRRMPVATAARVLGDTLMGQRGRGLSVGTMVMGCDGGQPDAAHLYYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRPGMSLKEAADLARRAVRHATYRDAFSGGFINVFVVDASGWSKM 950
            A+  ++ SHGTTT+A +F GGV+ AVDSRASMGS++GS T +KVIP+S Y++GTMAGGAADC+FW R L MQ  + E R G R+ VA A+++LG+ +   RG GLS+GTM+ G D  +  A  L+YVDSDG R+KG  FSVGSG+TYAY +LD  YR  +  KEA +L +RA+ HAT+RDA+SGG INVFV+  +GW +M
Sbjct:   91 ANPNIKFSHGTTTLAFIFQGGVLVAVDSRASMGSYIGSGTVKKVIPISRYLIGTMAGGAADCSFWERNLAMQCRLHELREGSRISVAAASKLLGNIVFQYRGYGLSMGTMMAGFDDKKGPA--LFYVDSDGTRLKGNLFSVGSGATYAYGILDSEYRHDLDEKEAVELGKRAIYHATHRDAYSGGTINVFVIRETGWEQM 288
[Close]
BLAST of mRNA_H-paniculata_contig5112.12412.1 vs. uniprot
Match: F4PRF6_CAVFA (Proteasome subunit beta n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PRF6_CAVFA)

HSP 1 Score: 229 bits (583), Expect = 1.040e-64
Identity = 113/206 (54.85%), Postives = 155/206 (75.24%), Query Frame = 3 
Query:  345 PGADEPLRLSHGTTTVALLFDGGVIAAVDSRASMGSFVGSRTTQKVIPVSDYILGTMAGGAADCTFWLRYLGMQASIFEARNGRRMPVATAARVLGDTLMGQRGRGLSVGTMVMGCDGGQPDAAHLYYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRPGMSLKEAADLARRAVRHATYRDAFSGGFINVFVVDASGWSKMTTDD 962
            P A +P+ ++HGTTT+A +F+GGVI AVDS+++ GS+V SRT +KVI ++  +LGTMAGGAADC+FW R LG +  ++E RN   + VA A+++L + +   +G GLS+GTM+ G D   P    LYYVD+DG R+KG+ FSVGSGSTYAY VLD GY+P ++ +EA +L RRAV HAT+RDA SGGFINV+ V  +GW K+++DD
Sbjct:   77 PNAPKPIEMAHGTTTLAFVFNGGVIVAVDSKSTQGSYVASRTVKKVIEITPNLLGTMAGGAADCSFWERELGRRCRLYELRNKELISVAAASKILANIVYSYKGYGLSMGTMITGWDKTGPC---LYYVDNDGTRLKGQRFSVGSGSTYAYGVLDSGYKPDLTDQEAQELGRRAVYHATHRDAMSGGFINVYHVKETGWVKISSDD 279
[Close]
BLAST of mRNA_H-paniculata_contig5112.12412.1 vs. uniprot
Match: A0A5J4YV88_PORPP (Proteasome subunit beta n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YV88_PORPP)

HSP 1 Score: 228 bits (580), Expect = 1.790e-64
Identity = 111/211 (52.61%), Postives = 155/211 (73.46%), Query Frame = 3 
Query:  354 DEPLRLSHGTTTVALLFDGGVIAAVDSRASMGSFVGSRTTQKVIPVSDYILGTMAGGAADCTFWLRYLGMQASIFEARNGRRMPVATAARVLGDTLMGQRGRGLSVGTMVMGCDGGQPDAAHLYYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRPGMSLKEAADLARRAVRHATYRDAFSGGFINVFVVDASGWSKMTTDDSGFMEVRE 986
            D  L+  HGTTT+A +F GGV+ AVDSRASMG ++GS + +K+I ++ Y+LGTMAGGAADC+FW R LG +  ++E RN  R+ VA A+++L +T+ G +G GLS+GTM+ G D   P+   L+YVD+DG R+KG  FSVGSGSTYAY VLD+GY   +++++A +L RR++ HAT+RDA SGGFINV+ V   GW  ++ +DSG  +  E
Sbjct:   64 DHALKFLHGTTTLAFVFQGGVVVAVDSRASMGQYIGSGSVRKIIEINPYLLGTMAGGAADCSFWERDLGRRCRLYELRNKERISVAAASKLLANTVYGYKGMGLSMGTMITGWDKTGPN---LFYVDNDGTRLKGHKFSVGSGSTYAYGVLDQGYHWDLTVEDALELGRRSIFHATHRDAASGGFINVYHVKEDGWVNISHEDSGMTKYYE 271
[Close]
BLAST of mRNA_H-paniculata_contig5112.12412.1 vs. uniprot
Match: A0A7S0W9V4_9CRYP (Proteasome subunit beta n=3 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0W9V4_9CRYP)

HSP 1 Score: 227 bits (579), Expect = 2.900e-64
Identity = 111/203 (54.68%), Postives = 148/203 (72.91%), Query Frame = 3 
Query:  354 DEPLRLSHGTTTVALLFDGGVIAAVDSRASMGSFVGSRTTQKVIPVSDYILGTMAGGAADCTFWLRYLGMQASIFEARNGRRMPVATAARVLGDTLMGQRGRGLSVGTMVMGCDGGQPDAAHLYYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRPGMSLKEAADLARRAVRHATYRDAFSGGFINVFVVDASGWSKMTTDD 962
            D  L+  HGTTT+  +F GG++ AVDSRASMGS++GS+T +K I ++ Y+LGTMAGGAADC +W R+LG    ++E RN  R+ VA A+++L + +   +G GLS+GTMV G D G     +LYY DSDG RVKG  FSVGSGS YAY VLD G+RP +S+ EA +L RRA+ HAT+RDA SGGF++V+ V   GW+K++ DD
Sbjct:   78 DPALKFLHGTTTLGFIFQGGIVLAVDSRASMGSYIGSQTVKKCIEITPYLLGTMAGGAADCQYWERHLGRLCRLYELRNRERISVAAASKLLHNIMYSYKGYGLSMGTMVAGWDKGV--GPNLYYCDSDGTRVKGEKFSVGSGSPYAYGVLDAGFRPDLSVPEACELGRRAIYHATFRDAASGGFVSVYHVHEDGWTKVSVDD 278
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5112.12412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCV3_ECTSI4.460e-11376.76Proteasome subunit beta n=1 Tax=Ectocarpus silicul... [more]
A0A836CP51_9STRA4.800e-7059.17Proteasome endopeptidase complex n=1 Tax=Tribonema... [more]
M2W568_GALSU9.570e-6855.67Proteasome subunit beta n=1 Tax=Galdieria sulphura... [more]
A0A6U2YY24_9EUKA5.600e-6657.58Proteasome subunit beta n=2 Tax=Lotharella TaxID=7... [more]
A0A1X6NR75_PORUM1.440e-6557.49Proteasome subunit beta type-5 n=1 Tax=Porphyra um... [more]
A0A7S2BHB5_9CHLO4.710e-6553.30Proteasome subunit beta n=2 Tax=Pycnococcus provas... [more]
A0A7S2VUQ7_9EUKA5.010e-6557.00Proteasome subunit beta n=1 Tax=Norrisiella sphaer... [more]
F4PRF6_CAVFA1.040e-6454.85Proteasome subunit beta n=1 Tax=Cavenderia fascicu... [more]
A0A5J4YV88_PORPP1.790e-6452.61Proteasome subunit beta n=1 Tax=Porphyridium purpu... [more]
A0A7S0W9V4_9CRYP2.900e-6454.68Proteasome subunit beta n=3 Tax=Hemiselmis TaxID=7... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5112contigH-paniculata_contig5112:3079..8963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score360.5
Seed ortholog evalue9.5e-97
Seed eggNOG ortholog2880.D8LCV3
Preferred namePSMB11
KEGG koko:K02737,ko:K02740,ko:K05654,ko:K11598
KEGG TC3.A.1.209
KEGG Pathwayko02010,ko03050,ko04145,ko04612,ko05168,ko05340,map02010,map03050,map04145,map04612,map05168,map05340
KEGG ModuleM00337,M00340
Hectar predicted targeting categorysignal peptide
GOsGO:0000502,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010033,GO:0016579,GO:0016787,GO:0019221,GO:0019222,GO:0019538,GO:0019774,GO:0019882,GO:0023052,GO:0030097,GO:0030098,GO:0030154,GO:0030162,GO:0030217,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034097,GO:0034340,GO:0036037,GO:0036211,GO:0042110,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043374,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045321,GO:0045444,GO:0046631,GO:0046632,GO:0046649,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051336,GO:0051716,GO:0052547,GO:0052548,GO:0060255,GO:0060337,GO:0065007,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0070887,GO:0071310,GO:0071345,GO:0071357,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1902494,GO:1905368,GO:1905369,GO:1990111
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0175@2759
Ec32 ortholog description20S proteasome beta 5 subunit
Ec32 orthologEc-07_007040.1
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03051
Exons5
Model size2653
Cds size1146
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930499.135074-UTR-H-paniculata_contig5112:3078..31221622930499.135074-UTR-H-paniculata_contig5112:3078..3122Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5112 3079..3122 +
1691481319.9935086-UTR-H-paniculata_contig5112:3078..31221691481319.9935086-UTR-H-paniculata_contig5112:3078..3122Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5112 3079..3122 +
1622930499.22457-UTR-H-paniculata_contig5112:7500..89631622930499.22457-UTR-H-paniculata_contig5112:7500..8963Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5112 7501..8963 +
1691481320.0669644-UTR-H-paniculata_contig5112:7500..89631691481320.0669644-UTR-H-paniculata_contig5112:7500..8963Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5112 7501..8963 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930499.1490362-CDS-H-paniculata_contig5112:3122..35571622930499.1490362-CDS-H-paniculata_contig5112:3122..3557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5112 3123..3557 +
1691481320.0097718-CDS-H-paniculata_contig5112:3122..35571691481320.0097718-CDS-H-paniculata_contig5112:3122..3557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5112 3123..3557 +
1622930499.1604452-CDS-H-paniculata_contig5112:4009..40961622930499.1604452-CDS-H-paniculata_contig5112:4009..4096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5112 4010..4096 +
1691481320.0266795-CDS-H-paniculata_contig5112:4009..40961691481320.0266795-CDS-H-paniculata_contig5112:4009..4096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5112 4010..4096 +
1622930499.175907-CDS-H-paniculata_contig5112:4395..46041622930499.175907-CDS-H-paniculata_contig5112:4395..4604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5112 4396..4604 +
1691481320.0371592-CDS-H-paniculata_contig5112:4395..46041691481320.0371592-CDS-H-paniculata_contig5112:4395..4604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5112 4396..4604 +
1622930499.1966493-CDS-H-paniculata_contig5112:6043..61681622930499.1966493-CDS-H-paniculata_contig5112:6043..6168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5112 6044..6168 +
1691481320.046859-CDS-H-paniculata_contig5112:6043..61681691481320.046859-CDS-H-paniculata_contig5112:6043..6168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5112 6044..6168 +
1622930499.2116604-CDS-H-paniculata_contig5112:7210..75001622930499.2116604-CDS-H-paniculata_contig5112:7210..7500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5112 7211..7500 +
1691481320.0586329-CDS-H-paniculata_contig5112:7210..75001691481320.0586329-CDS-H-paniculata_contig5112:7210..7500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5112 7211..7500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5112.12412.1prot_H-paniculata_contig5112.12412.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5112 3123..7500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5112.12412.1

>prot_H-paniculata_contig5112.12412.1 ID=prot_H-paniculata_contig5112.12412.1|Name=mRNA_H-paniculata_contig5112.12412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=382bp
MCAYLAATSSAKNAKHLVIIILILCCYNTVLLPSHSKTKAGVAVSASSPP
WLFGQGNVDSTTATATRHVFSELSDDSILARTMAAGRCGKSGSNPYELVA
PGADEPLRLSHGTTTVALLFDGGVIAAVDSRASMGSFVGSRTTQKVIPVS
DYILGTMAGGAADCTFWLRYLGMQASIFEARNGRRMPVATAARVLGDTLM
GQRGRGLSVGTMVMGCDGGQPDAAHLYYVDSDGARVKGRYFSVGSGSTYA
YSVLDEGYRPGMSLKEAADLARRAVRHATYRDAFSGGFINVFVVDASGWS
KMTTDDSGFMEVREGPHGEEEQAGELAIGRLKQDEGAEAAEVVVGAGNSL
LESVDDDIEGGDRQDRGEEDEPGVGGEGGAQ*
back to top

mRNA from alignment at H-paniculata_contig5112:3079..8963+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5112.12412.1 ID=mRNA_H-paniculata_contig5112.12412.1|Name=mRNA_H-paniculata_contig5112.12412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5885bp|location=Sequence derived from alignment at H-paniculata_contig5112:3079..8963+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCGATAATATGTACCTAGTACGGACGGAGCATTCGAGCACCGATGTGT
GCTTACCTAGCAGCGACCTCATCCGCCAAAAATGCGAAACATCTAGTTAT
TATAATTCTTATTTTGTGTTGCTACAACACGGTACTTCTCCCCAGTCATT
CCAAAACCAAAGCAGGGGTAGCCGTCTCCGCCAGCAGCCCGCCATGGTTG
TTCGGACAAGGTAACGTCGACAGCACCACAGCAACAGCGACACGACATGT
GTTCAGCGAATTATCAGATGACTCCATTCTGGCGAGAACGATGGCCGCCG
GTCGATGCGGGAAGAGCGGGAGTAATCCATACGAGCTCGTGGCGCCCGGT
GCAGACGAGCCACTTCGATTAAGCCATGGCACTACCACCGTGGCGCTTTT
GTTTGACGGCGGCGTAATTGCCGCGGTTGACTCCCGCGCCAGCATGGGTT
CATTCGTGGGTTCTCGCACGACTCAGAAGGTGTGCGACGCGGTTGGATGT
GGGGGGTCGAGTTGTGGGCGATCGACGTGATAGTCCTCGTGGAGATAACG
TGCGGTTGTGCGGCTGTAATAATAGTAGGGTCCAGCCTTTGCTGCTGATA
CAGACAGTATCGAGAGAAATCATTGCACAACTGGAGGGGCGGCAGATCAT
GTCATGTGTCCATCTGCCAAAATCGTTGCCTTTCTCGGGTACGGAGAGAG
GAGAGAGACAGGAGAGCAGAGCTCAGTAGTGAACCCAATTGTTACGGTTG
CGTCAGTGCTTGCTTTTTTTCTATTTGTTGGTCCCAAAACGAGCCCGTGT
GCATTTGAAGTTCTATTGCAAATGTGTTCAATAAATTATGTACTGTACGC
TGACAAGTACGCGGATGCGCCGTACGGAGATCGTGCCGAATGTCGACTGA
CGATACCAGCCTTGGCCATGGTGACACTCAGGTGATCCCTGTATCTGACT
ACATCCTTGGTACTATGGCGGGGGGCGCAGCTGACTGCACCTTCTGGCTG
CGCTACCTGGGTATGCAGGTAAGACACCGCGGAAAACCACTAGCCACATC
CTAGCTCTTCTAAGACCTTATTGGTCGCACGCCTGCCCAATACGTTTTCG
CAGATGGATTTCTCGGAGGCTCGACTTCCACGATCGCGTCACCTGTGCTC
CTTGAAACATAATATCACCGTTACGACACCGACCTTATCACGTAGAACCT
ACCGTTACGTTACGATATCACTGTGCGAGATTCAAGCACTGCATCCTCCC
AAACGTTCCAAACCCTTTCATGAAATTCGTCGTTGCTCCATATAAAACTG
ACCATCTGAACACGTAGGCGAGCATTTTTGAAGCTCGAAACGGCCGGCGC
ATGCCCGTGGCAACTGCAGCCAGAGTCCTTGGGGACACACTCATGGGCCA
ACGCGGGCGGGGATTGTCGGTGGGGACGATGGTGATGGGCTGTGATGGAG
GCCAACCTGATGCAGCGCACCTGTATTACGTTGATAGCGACGGGGCTCGG
GTGAAGGGGCGGTATTTCTCGGTCGGGTGAGTCTGAGATAAACCTATGTC
TTACTATATCTGAGGCGTGTTACTACTATCCAGGGAACTTGTGTCCCTAG
TCGGCTGAGTCAGACACAAACCAATGCCGTGTTGTATGTCAAGTGTATTG
TTATTCTCCAGGAATTTCGTGTCTCTCTGTTCCAACACCTAGCCCTCCCC
CCCCCCCCCCCCCGCGCGCAAACGTTTTCCGAACTTCAACTACTTTTGTC
TTGTTCTCGTCAGTACTGCAGTACACAGTTTTACCACGCGCTTCCTTCAT
GGATAAGCATGCGGGAAATTGCCTTATGTGGATCGGTCAGTGGGCATGAA
AGATGATGATAATGCAATAGCTACGCGTTACTGGGCTAAACTCGAGGAAT
GGTATTAATAGTGATACTATATGCGGCAGGCAAGTTCTAGTAAGCATCAC
GTCTGTAACGAGGAAAAATTTCCTACCCCTGTCTTCGATATTTAACCGTC
TTTGGAGATCTAGATGTCTGTGCCGAGAGATGGGAGGCGCCCCGTTTTTC
TCCGCATCAAGCCCAATTAATTTTATGTGGGCGGTTTTTACAAGATTTGA
CAATTGTGTAGTAGTACAGTAGGTACGACCGCCGCAGCTCGCACGGCAGC
GGAGCTATTTCGGCGCGTCAAATGTACTACACGAACACATATCTGATATC
TCATTGACAGACCTCCTGTTCCGGATTTGGTGTCCAGTAGCCCAGCAAAT
CGATCTTCTGGTACCATTCTATACGGTGTATTATTTTACATGTGTATATT
AATCTTTTAACGCAAGTGCTTCTCTTCTTCACGGCACAGATTTTTGCGCA
CCAAGCTCTGTGCCGCACCAACTTCATTTTTTTGCTGAAATGTCATTCCT
TTGCCGTCTAAATTGGGATCTGTAAGTAACGCAACATTCGCTATTTGGTC
GACATTTGATATGGTGCCAGTGTTTGTTTCCGTTCATGAGATCCTTCCCC
AAGACCGACAGTGGCAGTCGAGATAAATATCCATACTACCACCGAGCACA
TGAAGCACACCCTTGTGAGCTAGCCGCACGTCGGAGGAAAACACTCTTGC
TCTGAGCTGTTTCTCTTTTCCTTGACTCCATACACTCTTTTCGCGAGAGC
GATCTGGGAGCGCCTTGCACTGTTGGCTTATGTTCCTTTCCTTTTCCACC
CCGGCATATGCAACCTCTGTTGACGTACCTCGTAAGTGCTGTGAGGGGAG
GAGCTTAATCCCACGACTAAGTATCAAGTACAAAGTCCCGATTTAGATCC
CAGAAGAACTCGGGTTAATGATCACGTCGGTCTCCCCTCGGTTCTAAGCT
CAAGAACCGATGGCTTATGTTCCTCTTATCTCGCTGGGTTTGCTTGCAAA
GGTGCGTGTGGGCAAGCACACCTGGCCTTGTTAACAAATGTATTAAATAT
ATGCTACTGCCGCAGGTCAGGGAGCACATACGCATACAGTGTTTTAGACG
AGGGTTACCGACCGGGCATGTCGTTGAAAGAGGCTGCAGACCTGGCGAGA
AGGGCAGTACGCCACGCGACCTACAGAGATGCCTTCTCGGGTGAGCGGGG
CGGGTTGTACAATTTTGGCCCTAACGTAAGAGAACTGAACAAAACAAAAC
CAGACTCAATTTGTTTTCGAAGTAAATAAGAGATTCATGAGGTCGTGAAG
GAGAAAAAAGTGTGGTCTTGGTTTTTGCAAGTAAAAAACTCGTGAATCCT
TGTACACAATAATCTCCTTGAGTGTAATTTCCAGGTGCACCCGCAAAAAG
CACGAACTTCAGGCTGGATTTGCGTCTGTTTTTCTCGCGAGAAAGAGGAT
ACCGCGCGCGGTATTTTCGAGTTGTTGAGCCGTCTATAGACTATTATTGA
TTCTATACGTGATTATTTTTCTTATTTTGATCTCTAAATTTAATTTTAGA
GAATCGAAAGAGATGGGTAGTTTTTGGATATTTTGGGCAAAATTCGAAAT
TGGACGTTTGTCAATTTTTGTAAGCTATGAAGATTATGAGCAAAAAAGAC
TTGACCTGTTTCTAACATTAAAATCCGGTTGTCGCTGTTTGGCAGCAGGG
CGGGGGCGAAAGTAACAGGGTTCCGAGGCATTCTCACCCTGAAATGAGCG
TCGGTTGTAAGTCGTAAAGCATCAGCCGGAAAAAAACCCTCACATGTTCG
GTTTGCAACTCACCAGCTACACGGTAGCTTTTTTTATTCGTGTGTATTGC
AGTACCATGTTACTGACTTGGCATTCCCGACAAGTAAGTTGCTTGTGAGA
GAGTGGGAGCGAGACTGGTTCATTTACGCCTCCTTACTGGAAACCCCACA
GGTTTTCTACTTTCAACTTCTGTCCACTTGGACCGATTGTCTTAACCGGC
AATTGGACAACTATTGCATGCATTTGCTAATATTGACATTGCACGGGACC
TGTCTTGCTTGCATCGTCGGGAACTTCAGCCAGCATGGAGTTTCATTTGG
AACATTAAGAGGGCACGTGATGCAATATCGGTACCATCGTCAACCTTGCA
CATTCATTTCCGAGTTAAGTTGGACCCGGGAACCACCCGTTACCGCGCGG
CTCGCTCGTGAATATTTTGGTTGCAAATGCAGGCGGGTTCATCAATGTTT
TTGTGGTTGATGCCTCCGGGTGGTCGAAGATGACTACCGATGACTCCGGT
TTCATGGAAGTTCGAGAAGGGCCACACGGCGAAGAGGAACAAGCGGGCGA
ACTTGCTATAGGACGATTAAAACAAGACGAGGGGGCGGAGGCTGCCGAGG
TCGTGGTAGGAGCCGGAAACAGCCTGCTCGAATCTGTAGATGATGATATT
GAGGGTGGCGATCGACAAGACCGTGGGGAGGAAGATGAACCGGGGGTTGG
TGGGGAAGGGGGTGCACAATGACGTGGGCGATGTTCTGCTAAACACGTTT
TTTTGGGGGGGGGGCAGTTACGATATCTAGTTGTTGATGAATTCACGATC
ACGGTACTTGAGTCAACCGGACGCGAAGCTGTTACGACACCCCATCCGTT
GTCAGGTAGAATGCTCGCGTGCGGTACTCTGACGATACCAACAGATGTGC
GCAGGCTGAAGTTGTGTGGCTGAGCGTACAATGTTTGCTCGAACAGGGTT
ACCTCATGAGAACTTAATGTCATGAGCTCTTGTAGCGCCATAAAACTCAA
GAAAGCATACAGTTAGTGTTGAGAGTGCACCGTACCTACCTGTATCTGCA
TTGTTGCCATATGTACTTCCTCTGTGCCAGAATTCTGTATCGTTATCGTT
ATTTGTTGATACCTTTGTCAAATTTGAGATTTAAAAAAAAAATGATCCTA
TCATTCGAAAGCCCACAACATCGGCTTGCACGTTCATATCTCCAGAATAT
CTTTTCAATACGAAATAGTTGAGAAAATGATTTCTTACACTGTTTTTTTT
TTTTTTCAAAATGGCAACTTTTTTCAGAAACAGCAAAATTGACCAAAAAC
GGACGAAATGATGGATAATCGGCGCTATCGTCTCAACGAGACCTCCCATG
AACTCTGAATCCAAACAGTGTAAAATAGTGAACTGTTCTGAGGTGGTTCC
AATGTTCTGTTCTGGCGTGGTTCGAACTAGAATTCGGTAAGTACTCCGAG
AAGAGCGTTCCACTTGATGTTTTCGGCCCACTTTTGAATGGCCGCTCTTC
GACGGCAAGATCGGGATATGGCGTGCTTGCGTCATTAAACAGGACACCAG
CACCGCCCGCCGCGAAAGGCGCGACGAGTACGGGTTCGATATAATCATCG
ATAGCGACTGGTACCAGGAGTGGTATACGGAGGATATCCTGCCGACAATC
AACGAAAATATGCCATGGTTGGAGGATGGCGACCTGGTCGTGCAGCAGGC
AGGACAGGGCGAGTCCGCGCACGGGTAAAGGCACGCCGAGCAAGCTAAAC
CAAGCAGGGAGGGAGGGTGGATGGAGAATCGAGTTCATAATGCAGCCTTC
ACAGTCAGTGATTTGGGATTCTTCGCACACTTAAAAAGCAGAGGGTGGAC
GGGGTGCTACAGTACGACAGACGACCTTATAAAGAGGTTTAAGGCAATGT
ACGGCGAGTATGACCCGGACACTTCAAGAGAGGGTATGGCAGAGCCTCTT
CACAATATACAATCAAGTGTTGAGAGCGCTGGGAGAGAACGATTTCAAGG
TTGAGTACACTGGGACGAGGAAAGACCGCGTGAGGGGGTTCTGGAACATT
TGGTCGCGATAGACAGAGACGCTTTCGGCGTGGCGCTGAATTGGTGGATT
GATGGAGAGGACGGGAATTAATAATACTGAATTTGATGTAGATACCAAGG
AATCCACCTCAAAAAGAATCTTGTTTTCATCGAAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5112:3079..8963+

>mRNA_H-paniculata_contig5112.12412.1 ID=mRNA_H-paniculata_contig5112.12412.1|Name=mRNA_H-paniculata_contig5112.12412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2292bp|location=Sequence derived from alignment at H-paniculata_contig5112:3079..8963+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTGCTTACCTAGCAGCGACCTCATCCGCCAAAAATGCGAAACATCT
AGTTATTATAATTCTTATTTTGTGTTGCTACAACACGGTACTTCTCCCCA
GTCATTCCAAAACCAAAGCAGGGGTAGCCGTCTCCGCCAGCAGCCCGCCA
TGGTTGTTCGGACAAGGTAACGTCGACAGCACCACAGCAACAGCGACACG
ACATGTGTTCAGCGAATTATCAGATGACTCCATTCTGGCGAGAACGATGG
CCGCCGGTCGATGCGGGAAGAGCGGGAGTAATCCATACGAGCTCGTGGCG
CCCGGTGCAGACGAGCCACTTCGATTAAGCCATGGCACTACCACCGTGGC
GCTTTTGTTTGACGGCGGCGTAATTGCCGCGGTTGACTCCCGCGCCAGCA
TGGGTTCATTCGTGGGTTCTCGCACGACTCAGAAGATGTGTGCTTACCTA
GCAGCGACCTCATCCGCCAAAAATGCGAAACATCTAGTTATTATAATTCT
TATTTTGTGTTGCTACAACACGGTACTTCTCCCCAGTCATTCCAAAACCA
AAGCAGGGGTAGCCGTCTCCGCCAGCAGCCCGCCATGGTTGTTCGGACAA
GGTAACGTCGACAGCACCACAGCAACAGCGACACGACATGTGTTCAGCGA
ATTATCAGATGACTCCATTCTGGCGAGAACGATGGCCGCCGGTCGATGCG
GGAAGAGCGGGAGTAATCCATACGAGCTCGTGGCGCCCGGTGCAGACGAG
CCACTTCGATTAAGCCATGGCACTACCACCGTGGCGCTTTTGTTTGACGG
CGGCGTAATTGCCGCGGTTGACTCCCGCGCCAGCATGGGTTCATTCGTGG
GTTCTCGCACGACTCAGAAGGTGATCCCTGTATCTGACTACATCCTTGGT
ACTATGGCGGGGGGCGCAGCTGACTGCACCTTCTGGCTGCGCTACCTGGG
TATGCAGGTGATCCCTGTATCTGACTACATCCTTGGTACTATGGCGGGGG
GCGCAGCTGACTGCACCTTCTGGCTGCGCTACCTGGGTATGCAGGCGAGC
ATTTTTGAAGCTCGAAACGGCCGGCGCATGCCCGTGGCAACTGCAGCCAG
AGTCCTTGGGGACACACTCATGGGCCAACGCGGGCGGGGATTGTCGGTGG
GGACGATGGTGATGGGCTGTGATGGAGGCCAACCTGATGCAGCGCACCTG
TATTACGTTGATAGCGACGGGGCTCGGGTGAAGGGGCGGTATTTCTCGGT
CGGGCGAGCATTTTTGAAGCTCGAAACGGCCGGCGCATGCCCGTGGCAAC
TGCAGCCAGAGTCCTTGGGGACACACTCATGGGCCAACGCGGGCGGGGAT
TGTCGGTGGGGACGATGGTGATGGGCTGTGATGGAGGCCAACCTGATGCA
GCGCACCTGTATTACGTTGATAGCGACGGGGCTCGGGTGAAGGGGCGGTA
TTTCTCGGTCGGGTCAGGGAGCACATACGCATACAGTGTTTTAGACGAGG
GTTACCGACCGGGCATGTCGTTGAAAGAGGCTGCAGACCTGGCGAGAAGG
GCAGTACGCCACGCGACCTACAGAGATGCCTTCTCGGGTCAGGGAGCACA
TACGCATACAGTGTTTTAGACGAGGGTTACCGACCGGGCATGTCGTTGAA
AGAGGCTGCAGACCTGGCGAGAAGGGCAGTACGCCACGCGACCTACAGAG
ATGCCTTCTCGGGCGGGTTCATCAATGTTTTTGTGGTTGATGCCTCCGGG
TGGTCGAAGATGACTACCGATGACTCCGGTTTCATGGAAGTTCGAGAAGG
GCCACACGGCGAAGAGGAACAAGCGGGCGAACTTGCTATAGGACGATTAA
AACAAGACGAGGGGGCGGAGGCTGCCGAGGTCGTGGTAGGAGCCGGAAAC
AGCCTGCTCGAATCTGTAGATGATGATATTGAGGGTGGCGATCGACAAGA
CCGTGGGGAGGAAGATGAACCGGGGGTTGGTGGGGAAGGGGGTGCACAAT
GAGCGGGTTCATCAATGTTTTTGTGGTTGATGCCTCCGGGTGGTCGAAGA
TGACTACCGATGACTCCGGTTTCATGGAAGTTCGAGAAGGGCCACACGGC
GAAGAGGAACAAGCGGGCGAACTTGCTATAGGACGATTAAAACAAGACGA
GGGGGCGGAGGCTGCCGAGGTCGTGGTAGGAGCCGGAAACAGCCTGCTCG
AATCTGTAGATGATGATATTGAGGGTGGCGATCGACAAGACCGTGGGGAG
GAAGATGAACCGGGGGTTGGTGGGGAAGGGGGTGCACAATGA
back to top