|
|
Homology
BLAST of mRNA_H-paniculata_contig11950.1241.1 vs. uniprot
Match: A0A6H5KXW1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXW1_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 1.970e-15 Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 3
Query: 303 STEPDFNPRATVRHPTAPQQQDPLLVHLMPFAEAEGYQYVGGVSKCWRDAWDGGGDGRPHETKLNSAVESASRLEWARAGGCRWDETICELAAAGGHLDTL 605
++ P P ++ P P +L HL+ FA G+ +V GVS+ WRDAW G RP ET++++AV+S SRL WARA G W ++C AA+GGHL TL
Sbjct: 710 ASSPRTRPLSSPSAPVNPLADPTILRHLISFAARNGFLFVAGVSRSWRDAW---GVERPPETEVDAAVQSPSRLGWARASGLGWGPSVCARAASGGHLATL 807
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 90.9 |
| Seed ortholog evalue | 8.9e-16 |
| Seed eggNOG ortholog | 2880.D7FMP0 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2AMK4@1,2RZCC@2759 |
| Ec32 ortholog description | Ankyrin-repeat protein similar to EsV-1-2 |
| Ec32 ortholog | Ec-05_005960.1 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 2 |
| Model size | 1272 |
| Cds size | 729 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11950.1241.1 >prot_H-paniculata_contig11950.1241.1 ID=prot_H-paniculata_contig11950.1241.1|Name=mRNA_H-paniculata_contig11950.1241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=243bp
MPSKVGSKAATSLSSTRCQQQTLTDLLFQQEDTKSQNHQDGLGCRSTEPD
FNPRATVRHPTAPQQQDPLLVHLMPFAEAEGYQYVGGVSKCWRDAWDGGG
DGRPHETKLNSAVESASRLEWARAGGCRWDETICELAAAGGHLDTLRYAR
KQGCPWDVATCTQAAASGQLSILRWAHANGCPWDAQTCATAAWGGDLDML
RWARRAGCPWDESTCKEAAAGGHIEALKWCRANGCAWDKVGD* back to topmRNA from alignment at H-paniculata_contig11950:3137..4981+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig11950.1241.1 ID=mRNA_H-paniculata_contig11950.1241.1|Name=mRNA_H-paniculata_contig11950.1241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1845bp|location=Sequence derived from alignment at H-paniculata_contig11950:3137..4981+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCACACACAAAAGCGGTACCTTCATAAGTCTAAAGTCGTTGCATCTTAT
CATCCGGGAGATACCTGTAAAACGGATGTGTGTATCCGCTGGATCAACAC
AAATGCACTGCTCAGTAGAATGACCGTCTTGTCTTCGCCCTGATAGGCAC
ACTTTCACTCCATTAGAATGCCGAGTAAAGTGGGCAGCAAGGCGGCAACA
AGCCTCAGTTCGACGCGCTGTCAACAACAAACTTTGACGGATCTATTATT
TCAGCAGGAAGACACAAAATCACAAAATCACCAGGACGGGCTAGGTTGTC
GTTCGACCGAACCCGATTTCAACCCTCGCGCAACAGTCAGACACCCAACA
GCACCACAACAGCAGGACCCGCTATTAGTGCATCTCATGCCCTTCGCGGA
GGCCGAGGGCTACCAGTATGTCGGGGGCGTCAGCAAGTGTTGGCGGGATG
CGTGGGATGGAGGCGGGGACGGGCGCCCTCATGAAACCAAGCTGAACTCG
GCTGTAGAGAGCGCCTCTCGACTGGAGTGGGCACGGGCGGGCGGTTGCAG
ATGGGATGAGACGATTTGCGAGCTTGCAGCTGCTGGCGGCCACCTAGACA
CGCTGCGCTATGCCCGGAAGCAGGGATGCCCATGGGATGTGGCAACGTGT
ACCCAGGCGGCGGCGTCAGGGCAGCTGTCCATTCTGCGATGGGCGCATGC
AAACGGTTGTCCCTGGGACGCGCAAACGTGTGCTACGGCGGCTTGGGGAG
GAGATTTGGACATGCTCAGGTGTGTAATTTTAGTTTAAAATTTCAAAATA
TGGTGAGTGACCGTCACCACTGTCAGCAACAGAGCGGCAGAGGAGCAGCA
GGAGGATTTATTCCTTTTCGAGGTGTTATCATTCGCGCGGGATTTTGTTT
TGCGTTAAAGCTTTATGAGGGCTGCAGGCTGTTGCTTAAGACTTCATGCA
GGGTTGGTCAAATCTCGATGTCTCGTCTCGCGAAAAGGGTGAACGTACTT
GCCGCTAGAAATATCCTCTGTGCATTTTGCACAGACTGTGTTTTTTTCTG
TGTCGGTGCCGGCAGCATGATCAAATCTCTGTGGCCTTTGCTTCACGCCA
AAGGAACACTCCCAATCGAGAGCTCTGCGTGATTTCATCCAATGATGTAC
CGACCATGGAAGGGTCAACGAGAGAAACGGGCAACTGGAGAGCTGAGAGA
GAGTATAACTGTTTTTTGGTCCACATTGCAGGTTCGAGTATTAATTATCT
TTTATGCGTCGGGAATAAGTACAGACAATGGCCAGCAGTTGGAATAACAA
ACCTAGTACATCACTATTTCTGCGATCTGTGGTGACTGTTAGATGGGCCA
GGCGCGCGGGATGTCCGTGGGATGAATCCACTTGTAAAGAGGCTGCTGCC
GGGGGTCATATCGAGGCTCTCAAGTGGTGTAGGGCTAATGGCTGTGCTTG
GGACAAGGTGGGTGATTGATCGCACTACACTGTATCCTGTCTCTAGCTTA
AACCTTCCCGTCGGTGCACGAGTGTTGTCTTGATATTTTGGAGTGTATTG
GAGTGTATTTTCAATTGAACAAATCCTCAGAGAATATGTTTGACGGAAGT
ATTCTATCTCTCTAGTGTCGTATATTCGTTCAACTTTCACTGTGAGACTC
AAGTACATCAGATGGACAGCCGTCTCGAAGCTGTACAGAGTGTGTGATGC
GGACAGGGGGTATTAACCTGCAATCCACAAATCGCTGGGCCTACGTCCAA
ATTTGGTAGCTTTGGTTCTAGCCTCGACTGGCAGTAACGGAAAACGCACC
AACATACATAACACTAAACATTATGTCATGGGGCCACGCCGGGTA back to topCoding sequence (CDS) from alignment at H-paniculata_contig11950:3137..4981+ >mRNA_H-paniculata_contig11950.1241.1 ID=mRNA_H-paniculata_contig11950.1241.1|Name=mRNA_H-paniculata_contig11950.1241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1458bp|location=Sequence derived from alignment at H-paniculata_contig11950:3137..4981+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGAGTAAAGTGGGCAGCAAGGCGGCAACAAGCCTCAGTTCGACGCG
CTGTCAACAACAAACTTTGACGGATCTATTATTTCAGCAGGAAGACACAA
AATCACAAAATCACCAGGACGGGCTAGGTTGTCGTTCGACCGAACCCGAT
TTCAACCCTCGCGCAACAGTCAGACACCCAACAGCACCACAACAGCAGGA
CCCGCTATTAGTGCATCTCATGCCCTTCGCGGAGGCCGAGGGCTACCAGT
ATGTCGGGGGCGTCAGCAAGTGTTGGCGGGATGCGTGGGATGGAGGCGGG
GACGGGCGCCCTCATGAAACCAAGCTGAACTCGGCTGTAGAGAGCGCCTC
TCGACTGGAGTGGGCACGGGCGGGCGGTTGCAGATGGGATGAGACGATTT
GCGAGCTTGCAGCTGCTGGCGGCCACCTAGACACGCTGCGCTATGCCCGG
AAGCAGGGATGCCCATGGGATGTGGCAACGTGTACCCAGGCGGCGGCGTC
AGGGCAGCTGTCCATTCTGCGATGGGCGCATGCAAACGGTTGTCCCTGGG
ACGCGCAAACGTGTGCTACGGCGGCTTGGGGAGGAGATTTGGACATGCTC
AGATGCCGAGTAAAGTGGGCAGCAAGGCGGCAACAAGCCTCAGTTCGACG
CGCTGTCAACAACAAACTTTGACGGATCTATTATTTCAGCAGGAAGACAC
AAAATCACAAAATCACCAGGACGGGCTAGGTTGTCGTTCGACCGAACCCG
ATTTCAACCCTCGCGCAACAGTCAGACACCCAACAGCACCACAACAGCAG
GACCCGCTATTAGTGCATCTCATGCCCTTCGCGGAGGCCGAGGGCTACCA
GTATGTCGGGGGCGTCAGCAAGTGTTGGCGGGATGCGTGGGATGGAGGCG
GGGACGGGCGCCCTCATGAAACCAAGCTGAACTCGGCTGTAGAGAGCGCC
TCTCGACTGGAGTGGGCACGGGCGGGCGGTTGCAGATGGGATGAGACGAT
TTGCGAGCTTGCAGCTGCTGGCGGCCACCTAGACACGCTGCGCTATGCCC
GGAAGCAGGGATGCCCATGGGATGTGGCAACGTGTACCCAGGCGGCGGCG
TCAGGGCAGCTGTCCATTCTGCGATGGGCGCATGCAAACGGTTGTCCCTG
GGACGCGCAAACGTGTGCTACGGCGGCTTGGGGAGGAGATTTGGACATGC
TCAGATGGGCCAGGCGCGCGGGATGTCCGTGGGATGAATCCACTTGTAAA
GAGGCTGCTGCCGGGGGTCATATCGAGGCTCTCAAGTGGTGTAGGGCTAA
TGGCTGTGCTTGGGACAAGGTGGGTGATTGAATGGGCCAGGCGCGCGGGA
TGTCCGTGGGATGAATCCACTTGTAAAGAGGCTGCTGCCGGGGGTCATAT
CGAGGCTCTCAAGTGGTGTAGGGCTAATGGCTGTGCTTGGGACAAGGTGG
GTGATTGA back to top
|